BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472432
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21970.1 | Symbols: LEC1, EMB 212, EMB212, NF-YB9 | Histone ... 1393 0.0
> AT1G21970.1 | Symbols: LEC1, EMB 212, EMB212, NF-YB9 | Histone
superfamily protein | chr1:7727577-7729617 REVERSE LENGTH=936
Length=936
Score = 1393 bits (754), Expect = 0.0
Identities = 861/911 (95%), Gaps = 13/911 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaGACGGCAGAGAAACAATGGAACGTGGAGCTCCCTTCTATCACCATCAGCT 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 22 AAAAAAAAAAGACGGCAGAGAAACAATGGAACGTGGAGCTCCCTTCTCTCACTATCAGCT 81
Query 61 ACCCAAATCCATCTCTGAATTGAATTTGGACCAGCACAG---TAACCCAAACCCAATGAC 117
||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 82 ACCAAAATCCATCTCTGAATTGAACTTGGACCAGCACAGCAACAACCCAACCCCAATGAC 141
Query 118 CAGCTCAGTCGTCGTAGCCGACGCCAGTGACAACAACAAGGGTATCGTAGCCCAGCAGCA 177
|||||||||||| ||||||| |||| ||||||| ||||| |||||||| | |||||||||
Sbjct 142 CAGCTCAGTCGTAGTAGCCGGCGCCGGTGACAAGAACAATGGTATCGTGGTCCAGCAGCA 201
Query 178 ACTACCATGTATGGCTCGTGAACAAGACCAGTACATGCCAATCGCAAACGTCATAAGAAT 237
|| ||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 202 ACCACCATGTGTGGCTCGTGAGCAAGACCAATACATGCCAATCGCAAACGTCATAAGAAT 261
Query 238 CATGCGTAAAATCTTACCGTCGCACGCCAAAATCTCTGACGACGCCAAAGAAACGATTCA 297
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 262 CATGCGTAAAACCTTACCGTCTCACGCCAAAATCTCTGACGACGCCAAAGAAACGATTCA 321
Query 298 AGAATGTGTCTCCGAGTACATTAGCTTCGTGACCGGTGAAGCCAATGAGCGTTGCCAACG 357
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 322 AGAATGTGTCTCCGAGTACATCAGCTTCGTGACCGGTGAAGCCAACGAGCGTTGCCAACG 381
Query 358 TGAGCAACGTAAGACCATAACTGCTGAAGATATCCTTTGGGCTATGAGCAAGCTTGGGTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TGAGCAACGTAAGACCATAACTGCTGAAGATATCCTTTGGGCTATGAGCAAGCTTGGGTT 441
Query 418 CGATAACTACGTGGATCCACTCACCGTGTTCATTAACCGGTACCGTGAGATAGAGACCGA 477
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CGATAACTACGTGGACCCCCTCACCGTGTTCATTAACCGGTACCGTGAGATAGAGACCGA 501
Query 478 TCGTGGGTCGGCACTTAGAGGTGAGCCACCGTCGTTGAGACAGGCCTACGGAGGAAATGG 537
|||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 502 TCGTGGTTCTGCACTTAGAGGTGAGCCACCGTCGTTGAGACAAACCTATGGAGGAAATGG 561
Query 538 TATTGGGTTTCACGGCCCACCACATGGCCTACCTCCTCCTGGTCCTTATGGTTATGGTAT 597
||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 562 TATTGGGTTTCACGGCCCATCTCATGGCCTACCTCCTCCGGGTCCTTATGGTTATGGTAT 621
Query 598 GTTGGACCAATCCATGGTTATGGGAGGTGGTCGGTACTACCAAAACGGGTCGTCGGGTCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GTTGGACCAATCCATGGTTATGGGAGGTGGTCGGTACTACCAAAACGGGTCGTCGGGTCA 681
Query 658 GGATGAATCCAGTGTTGGTGGTGGCTCTTCGTCTTCCATTAACGGAATGCCGGGTTTTGA 717
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 682 AGATGAATCCAGTGTTGGTGGTGGCTCTTCGTCTTCCATTAACGGAATGCCGGCTTTTGA 741
Query 718 CTCAT-ATGGTCAGTATAAGTGAAGATGGAATTATTCTTCATTTTTATGCATTATCTATT 776
| ||| |||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 742 C-CATTATGGTCAGTATAAGTGAAGATGGAATTATTCTTCATTTTTAT--AT---CTGTT 795
Query 777 CAAAACATGTGTCTGGATAGATATTTTTATTTTTATGTCTTATCAATAACATTTCTATAT 836
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 796 CAAAACATGTGTTTGGATAGATATTTT-ATTTTTATGTCTTATCAATAACATTTCTATAT 854
Query 837 AATGTTGCTTCTTTAAGGAAA-GTGTTGAATTTCAATACTTTTTGAGAA-CTGATTTATA 894
||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||||
Sbjct 855 AATGTTGCTTCTTTAAGGAAAAGTGTTGTATTTCAATACTTTATGAGAAACTGATTTATA 914
Query 895 TATGCAAATGA 905
|||||||||||
Sbjct 915 TATGCAAATGA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44206049360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5