BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472434

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22010.1 | Symbols:  | unknown protein; Has 12 Blast hits to...   484    2e-136


> AT1G22010.1 | Symbols:  | unknown protein; Has 12 Blast hits 
to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:7749571-7750062 FORWARD LENGTH=492
Length=492

 Score =  484 bits (262),  Expect = 2e-136
 Identities = 335/371 (90%), Gaps = 2/371 (1%)
 Strand=Plus/Plus

Query  1    ATGGCCGAAAAAGTATCCCTCAAGCATGAAATCGACTACAATCCTAAACCTGAAGACGCA  60
            |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    ATGGTCGAAAAAGTATCCATCAAGCATGAAATCAACTACAATCCTAAACCTGAAGACGCA  60

Query  61   GGAAGAATCAAAGTCTATGTGAGTATCCTAATATCGGAAGCTCCTATAAGAGATTTTCGA  120
            ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||
Sbjct  61   GGACGAATCAAAGTCTATGTGAGTATCCTAATGTCGGAAGATCCTATAAGAGATCGTCGA  120

Query  121  CCAGTACTCGCATTCTCTTTGCCTGCCAAAGAATTTCGGGATAGCTTCACGAGGTATAGA  180
            ||| ||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  121  CCAATACTAACATTCTCTTTGCCTGCCAAAGAATTTCGGGATAGCTTCCCGAGTTATAGA  180

Query  181  TGGGAACAACTGAATTGCTTAGAGGATGATGAACGTCTCGATGTCTCTCAGGTTAATTTA  240
            |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct  181  TGGGAACAACTGAATTGCTTAGAGGACGATGAACGTATCGATGTCTCTCAGGTTGATTTA  240

Query  241  GCGAGGACGGAACTCAGTAGACTTGTCACTCACGTCATGTTCTACTTTGT-TAACTATCT  299
            ||||||| ||||||||||||||||||||| ||| ||||||| ||||| |  |||||||| 
Sbjct  241  GCGAGGAGGGAACTCAGTAGACTTGTCACCCACCTCATGTTATACTT-GCATAACTATCA  299

Query  300  AGATTGTATTCTGTCAATTTATATTACCTTTAAGCCCATGCGTCGTCCTCCTGCTATGAT  359
            |||||||  |||||||||||||||||||||||||  |||  ||||| ||| || || |||
Sbjct  300  AGATTGTGCTCTGTCAATTTATATTACCTTTAAGTTCATTAGTCGTACTCGTGTTAGGAT  359

Query  360  TGTTGAAGAGT  370
            | ||||| |||
Sbjct  360  TCTTGAACAGT  370



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17392641154


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5