BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472435
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22015.1 | Symbols: DD46 | Galactosyltransferase family prot... 2111 0.0
AT1G33430.2 | Symbols: | Galactosyltransferase family protein ... 141 2e-32
> AT1G22015.1 | Symbols: DD46 | Galactosyltransferase family protein
| chr1:7751002-7753519 REVERSE LENGTH=1514
Length=1514
Score = 2111 bits (1143), Expect = 0.0
Identities = 1268/1328 (95%), Gaps = 9/1328 (1%)
Strand=Plus/Plus
Query 1 TTAAAATTATACGTCTTGAAAGTTTTCTCCTCTCTTCTCTCATCGTGTCTCTTTGTGTGC 60
||||||||||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 30 TTAAAATTATACGTCTTAAAAGATTTCTTCTCTCTTCTCTGATCGTCTCTCTTTGTGTGC 89
Query 61 TCACAATGAAG--C-ACAACAAAGTCTCCAAGAGACTAACTATGACATGGGTTCCTCTTC 117
||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 90 TCACAATGAAGCACAACAACAAAGTCTCCAAGAGACTTACTATGACATGGGTTCCTCTTC 149
Query 118 TTTGCATTTCTTGCTTTTTCCTCGGAGCAATCTTCACCTCCAAGTTACGATCAGCTTCGT 177
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 150 TTTGCATTTCTTGCTTTTTCCTCGGAGCAATCTTCACCTCCAAATTACGATCAGCTTCGT 209
Query 178 CGGATTCCGGTAGCCAGCTCATTTTACAGCACCGGCGTGACCAGGAG-TTAAAGATTGTT 236
|||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 210 CGGATTCCGGTAGCCAGCTCATTTTACAGCACCGGCGTGATCAGGAGCTT-AAGATTGTT 268
Query 237 TCCCAAGATTATGCTCATGAGaaaaaaaaaTCACAAGAAAAAGATGTAATGGAAGAGGTT 296
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 269 ACCCAAGATTATGCTCATGAGAAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTT 328
Query 297 TTAAAAACCCATAAAGCAATCGAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAG 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TTAAAAACTCATAAAGCAATCGAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAG 388
Query 357 CTCTCTACTACACATATCTCTCAACAGATTGTGGATGCCTCATCAACCAATTCTTCAACA 416
|||||| ||||||||| | |||||||||||||| ||| |||| |||||||||||||||||
Sbjct 389 CTCTCTGCTACACATAGCCCTCAACAGATTGTGAATGTCTCAGCAACCAATTCTTCAACA 448
Query 417 GAAGGAAACCAAAGGAACAAAGTTTTCATGGTGATTGGTATCAATACTGCATTTAGCAGT 476
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 449 GAAGGAAACCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGT 508
Query 477 AGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAGGGGGAAAAGCTTGAGAAA 536
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 509 CGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTTGAGAAA 568
Query 537 TTAGAAAAAGAGAAAGGAATTGTCATCAAATTCATGATTGGACACAGTTCAACGCCAAAC 596
|| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 569 TTGGAAAAAGAGAAGGGAATTGTCGTCAAATTTATGATTGGACACAGTTCAACGCCAAAC 628
Query 597 AGTATATTGGATAAGGAAATTGATTCAGAAGATGCTCAATACAAAGATTTCTTTAGGCTG 656
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 629 AGTATGTTGGATAAGGAGATTGATTCAGAAGATGCTCAATACAACGATTTCTTTAGGCTG 688
Query 657 GATCATGTCGAAGGATATTACAATCTGTCTGCAAAAACCAAAAGCTTCTTTTCTAGTGCA 716
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 689 GATCATGTCGAAGGATATTACAATCTATCTGCAAAAACCAAAAGCTTCTTCTCTAGTGCA 748
Query 717 GTTGCAAAATGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTT 776
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 GTTGCAAAGTGGGATGCTGAGTTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTT 808
Query 777 GGTACGCTTGCTTCCACATTAGCTAGGCACCGTTCTAAGCCAAGGGTCTATATTGGATGT 836
|| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 809 GGCACGCTTGCTTCCACATTAGCAAGTCACCGTTCTAAGCCAAGGGTCTACATTGGATGT 868
Query 837 ATGAAATCCGGTCCTGTCCTTACTAAAAAGACGGCCAAGTACCGTGAACCCGAGTTTTGG 896
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 869 ATGAAATCCGGTCCTGTCCTTACCAAAAAGACGGCCAAGTACCGTGAACCCGAGTTTTGG 928
Query 897 AAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 AAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATA 988
Query 957 TCAAAGGATCTTGCCACATACATATCCAACAACCAGCCAATTTTGCATAAGTATGCAAAT 1016
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 989 TCAAAGGATCTTGCCACATACATATCTAACAACCAGCCAATTTTGCATAAGTATGCAAAT 1048
Query 1017 GAAGATGTGACACTCGGGTCATGGTTCATCGGTCTTGAGGTTGAGCAAATCGATGATCGT 1076
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1049 GAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGCAAATCGATGATCGT 1108
Query 1077 AATTTCTGTTGTGGTACTCCTCCAGACTGTGAAATAAGGGCAGAGGCTGGAGAAATGTGT 1136
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1109 AATTTCTGTTGTGGTACTCCTCCAGACTGTGAAATGAGGGCAGAGGCTGGCGAAATGTGT 1168
Query 1137 GTGGCGT-CATTCGACTGGAAGTGTAGTGGAGTATGCAGATCAGTTGATAGAATGTGGAT 1195
||||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1169 GTGGC-TACATTTGACTGGAAGTGTAGTGGAGTATGCAGATCAGTCGATAGAATGTGGAT 1227
Query 1196 GGTTCATGTGATGTGTGGCGAAGGT-GATAAAGCTGTGTCGGACGCGAATTTAAAACTCT 1254
|||||||||||||||||| |||||| | ||||||||||| |||||| |||||||||||||
Sbjct 1228 GGTTCATGTGATGTGTGGTGAAGGTAG-TAAAGCTGTGTGGGACGCAAATTTAAAACTCT 1286
Query 1255 CTTAGATCGGAGAAAGAGACAAGAGGAGATGAACATTTTGTTTTGTAAAGAATTAAAAGG 1314
||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1287 CTTAGATCGGAGAAAGACACAAGAGAAGATGAACATTTTGTTTTGTAAAGAACCAAAAGG 1346
Query 1315 TATACAAA 1322
||||||||
Sbjct 1347 TATACAAA 1354
> AT1G33430.2 | Symbols: | Galactosyltransferase family protein
| chr1:12124237-12126481 REVERSE LENGTH=1541
Length=1541
Score = 141 bits (76), Expect = 2e-32
Identities = 325/440 (74%), Gaps = 38/440 (9%)
Strand=Plus/Plus
Query 571 TGATTGGACACAGTTCAACGCCAAACAGTA-TATTGGATAAGGAAATTGATTCAGAAGAT 629
|||| ||||||||| |||| || | || | |||| ||||| | || ||| |||||||
Sbjct 655 TGATAGGACACAGTGCAACACC-AGGAGGAGTATTAGATAAAGCCATAGATGAAGAAGAT 713
Query 630 GCTCA-A-TACAAAGATTTCTTTAGGCTGGATCATGTCGAAGGATATTA-CAATCTGTCT 686
||| | | ||||||||||| || || | || | ||||||||| | ||| || ||
Sbjct 714 --TCAGAGCATAAAGATTTCTTAAGACTAAAACACATTGAAGGATATCACCAA-CTCTC- 769
Query 687 G-CAAAAACCAAAAGCT-T-CTTTTCTAGTGCAGTTGCAAAATGGGATGCTGAGTTTTAT 743
| |||| | ||| | || | ||| || | ||| ||||| | || || ||||| ||
Sbjct 770 GACAAAGA-CAAGA-CTGTACTTCTCAACAGCAACTGCAATGTATGACGCAGAGTTCTAC 827
Query 744 GT-CAAGATTGATGATGATGTTCACGTCAATCTT-GGTACGCTTGCTT-CCACA-TTAGC 799
|| ||| | |||||||||||||| |||||| || |||| ||||| || | ||| || ||
Sbjct 828 GTGAAAG-TGGATGATGATGTTCATGTCAAT-TTAGGTATGCTTG-TTACAACACTT-GC 883
Query 800 TAGGCACCGTTCTAAG-CCAAGGGTCTATATTGGATGTATGAAATCCGGTCCTG-TCCTT 857
|| | | || ||| |||||| | || |||||||| ||||| || ||||||| || ||
Sbjct 884 GAGATATCAATC-AAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTT 942
Query 858 -ACTAAAAA-GACGGCCAAGTACCGTGAACCCGAGTTTTGGAAATTTGGAGAAGAAGGTA 915
|| ||||| || | ||||||| || || ||||||||||||||||||||||||||||
Sbjct 943 CAC-AAAAAGGA--GTGAAGTACCACGAGCCAGAGTTTTGGAAATTTGGAGAAGAAGGTA 999
Query 916 ACAAATA-TTTCCGACATGCTACGGGACAGATTTATGCCATATC-AAAGGATCTT-GCCA 972
||||||| ||| | ||||| || || || ||||| || || || |||| | ||| || |
Sbjct 1000 ACAAATACTTTAGG-CATGCAACAGGTCAAATTTACGCAATCTCTAAAG-A-CTTAGCTA 1056
Query 973 CATACATATCCAAC-AACCA 991
|||| || |||| | |||||
Sbjct 1057 CATATATCTCCA-CTAACCA 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66063917220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5