BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472438
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22040.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2603 0.0
AT3G44670.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 113 5e-24
AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-L... 102 1e-20
> AT1G22040.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:7767924-7770055 FORWARD LENGTH=1838
Length=1838
Score = 2603 bits (1409), Expect = 0.0
Identities = 1663/1778 (94%), Gaps = 47/1778 (3%)
Strand=Plus/Plus
Query 1 ATTCAACTACAAAATTCCTCTCTGAACCAAAACaaaaaaaaGACAAATCCGAAACATGCG 60
||||||||||||||||||||| |||| | | ||||||||||||||||||||||||
Sbjct 16 ATTCAACTACAAAATTCCTCTTTGAA-C----C---AAAAAGACAAATCCGAAACATGCG 67
Query 61 TGTGGATACGAAAGATCTCAAGA-T--TCCACTCCTCAATTTCTCATCTTTGGCTTCCTC 117
||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||| ||
Sbjct 68 TGTGGATACGAAAGATCTCTAGATTCCTCCACTCCTCAATTTCTCATCTTTTGCTTCGTC 127
Query 118 GTGACTCTTCTTGATTTCATCAATAATGGGTTCTGTTATGAGTTTGAGCTGTTCCAAGAG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GTGACTCTTCTTGATTTCATCAATAATGGGTTCTGTTATGAGTTTGAGCTGTTCCAAGAG 187
Query 178 GAAAGCAACGAGTCAGGACGTTGAGTATTCAAGTGAATCTCGTAAAAGACGAAAGATATG 237
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 188 GAAAGCAACGAGTCAGGACGTTGAGTGTTCAAGCGAATCTCGTAAAAGACGAAAGATATC 247
Query 238 TTCAGAGAACGATGTAGAAGAGTGTTGTAGATTGATTCCAAGTCTTCCGGATGAGTTATC 297
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 248 TTCAGAGAACGATGAAGAAGAGTGTTGTAGATTGATTCCAAGTCTTCCTGATGAGTTATC 307
Query 298 TATACAGATTCTTGCTAGGCTTCCTCGAATATGTTACTCGAGTGTTCGGTTGGTTTCTCG 357
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 308 TATACAGATTCTTGCTAGGCTTCCTAGAATTTGTTACTCGAGTGTTCGGTTGGTTTCTCG 367
Query 358 GAGGTGGAGATCGGCTGTTTCGACCTCTGAGGTTTATATTTTGAGGAAAGAGCTTCGGAG 417
|||||||||||||||||||||||| |||||||| |||| |||||||||||| ||| ||||
Sbjct 368 GAGGTGGAGATCGGCTGTTTCGACTTCTGAGGTGTATAGTTTGAGGAAAGAACTTGGGAG 427
Query 418 GACAGAGGAGTGGCTCTATGTGTTGACTAAAGGTCAAGAGGATAAGCTTTTGTGGTATGC 477
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 428 GACTGAGGAGTGGCTCTATGTGTTGACTAAAGGTCATGAGGATAAGCTTTTGTGGTATGC 487
Query 478 TTTAGATCCTGTTTCTACTAAATGGCAGAGATTGCCTCCAATGCCTGTTGTTGTTTACGA 537
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 488 TTTAGATCCTGTGTCTACTAAATGGCAGAGATTGCCTCCAATGCCGGTTGTTGTTTATGA 547
Query 538 AGAAGAGGCTAGAAGGAGTTTATCTGGTTTCTGGAATATGATTAGC-CCGAGCTTTAATT 596
||||||| |||||| ||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct 548 AGAAGAGTCTAGAAAGAGTTTATCTGGTTTGTGGAATATGATTA-CACCGAGCTTTAATG 606
Query 597 TTGGTGAGATTGTGAGGAGCTTTCTTGGTAGGAAGGA-TGCCTCTGAGCAAATGCCGTTT 655
|||||| |||||||||||||||||| ||||||| ||| | ||||||||||||||||||||
Sbjct 607 TTGGTGCGATTGTGAGGAGCTTTCTAGGTAGGAGGGACT-CCTCTGAGCAAATGCCGTTT 665
Query 656 TGTGGGTGCGCTATTGGTGCTGTTGATGGCTGTCTTTATGTTATTGGTGGGCTCTCTAGG 715
||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 666 TGTGGGTGCGCTATTGGTGCTGTTGATGGGGGTCTTTATGTTATTGGTGGACTTTCTAGG 725
Query 716 TCTAAAACAGTGAGCTGTGTTTGGCGGTTTGATCCGATTTTGAACTCTTGGAGTGAAGTT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TCTAAAACAGTGAGCTGTGTTTGGCGGTTTGATCCGATTTTGAACTCTTGGAGTGAAGTT 785
Query 776 AGTTCTATGTTGGCGAGTCGGGCTTATTCCAAAACAGGTGTATTGAATAAAAAACTATAT 835
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 786 AGTTCTATGTTGGCGAGTCGGGCTTATTCCAAAACAGGTGTATTGAATAAGAAACTATAT 845
Query 836 GTTGTTGGAGGGGTTGATCGGAGACGGGGAGGTTTATCTCCGCTTCAGTCAGCTGAGGTT 895
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 846 GTTGTTGGAGGGGTTGATCGGGGACGGGGAGGTTTATCTCCTCTTCAGTCAGCTGAGGTT 905
Query 896 TACGATCCAAGCACGGATGCTTGGTCAGAGGTTCCGAGCATGCCTTTCTCAAAGGCGCAA 955
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TATGATCCAAGCACGGATGCTTGGTCAGAGGTTCCGAGCATGCCTTTCTCAAAGGCGCAA 965
Query 956 GTGTTGCCAAATGCGTTTTTGGCTGACTTACTTAAGCCTATTGCCACAGGAATGACTTGC 1015
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 966 GTGTTGCCAAATGCGTTTTTGGCTGACTTACTAAAGCCTATTGCCACAGGAATGACTTGC 1025
Query 1016 TACAACGGTAGGTTATGTGTTCCTCAGAGTTTATACTCTTGGCCTTTCTTTGTTGATGTT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TACAACGGTAGGTTATGTGTTCCTCAGAGTTTATACTCTTGGCCTTTCTTTGTTGATGTT 1085
Query 1076 GGAGGAGAGGTTTATGATCCTGAGACAAATCTCTGGGTTGAAATGCCGTCTGGTATGGGT 1135
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGAGGAGAGGTTTATGATCCCGAGACAAATCTCTGGGTTGAAATGCCGTCTGGTATGGGT 1145
Query 1136 GAAGGTTGGCCTGCGAGGCAAGCGGGTACAAAACTGAGTGTTGTGGTGGATGGTGAGTTG 1195
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1146 GAAGGTTGGCCTGCGAGGCAAGCAGGTACAAAACTGAGTGTTGTGGTGGATGGTGAGTTA 1205
Query 1196 TATGCTTTTGATCCTTCTTCTTCTATGGAGAATGGGAAGATTAAAGTGTATGATCAGAAG 1255
|| |||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 1206 TACGCTTTTGATCCTTCTTCTTCGATGGAGAACGGAAAGATTAAAGTGTATGATCAAAAG 1265
Query 1256 GAAGATACTTGGAAGGTTGTTATCGGGGAAGTCCCTGTTTACGACTTAACAGATTCAGAA 1315
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1266 GAAGATACTTGGAAGGTTGTTATTGGGGAAGTCCCTGTGTATGACTTAACAGATTCAGAA 1325
Query 1316 TCTCCTTATTTGCTTGCTGGGTTTCACGGCAAGCTTCATTTTATTACTAGAGACCCTAAT 1375
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1326 TCTCCTTATTTGCTTGCTGGGTTTCATGGCAAGCTTCATTTCATTACTAGAGACCCTAAT 1385
Query 1376 CATAACGTTACAGTCTTACGAGCTGATGTCCCCAACATCCCAGTCTCCTCATCATCAGCT 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1386 CATAACGTTACAGTCTTACGAGCTGATGTCCCCAACATCCCAGTCTCCTCATCATCATCT 1445
Query 1436 AGCTCCAGTTCTGTTTCGGGTTCACGGTCTTCGAGTGAAAAGACCAATGCACCTAACAAG 1495
||||||||||||||||| | | | | | | | ||| |||||||||||||||||||
Sbjct 1446 AGCTCCAGTTCTGTTTCAA-T-C-C---CA-C-ACTTAAA-GACCAATGCACCTAACAAG 1496
Query 1496 TCAGACACTGTTACCTGGAAACTCATTGCAACCAAGGACTTTGGTGCTGCTGAACTTGTT 1555
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TCAGACACTGTTACATGGAAACTCATTGCAACCAAGGACTTTGGTGCTGCTGAACTTGTT 1556
Query 1556 AGCTGCCAAGTTATAGATATATAAAGTCATCAAAAGCTTTGCCCATTTCTCGTGGGACAT 1615
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1557 AGCTGCCAAGTTATAGATATATAAAGTCATCAGAAGCTTTGCCCATTTCTCGTGGGCCAT 1616
Query 1616 TGAGAATCTCTGTGTACAGCCAGAAGCAAAAACC--AA----A-GA--T--------A-- 1656
| ||||||||||||||||||||||||||||||| || | || | |
Sbjct 1617 TAAGAATCTCTGTGTACAGCCAGAAGCAAAAACATGAAGCTTATGAGATGTTCTCCCAAA 1676
Query 1657 --TT--ATCGTCTAATTGATCGATGATCCATTCTTCTAGCATTTGGCTGCCAAAGTAAGT 1712
|| ||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 1677 GATTTTATCGTCTAATTCTTCGATGATATATTCTTCTGGCATTTGGCTGCCAAAGTAAGC 1736
Query 1713 TTGAGCAATAAAATGTTGTGTGACAAATATATAATAAT 1750
||||| ||||||||||||||||||||||||||||||||
Sbjct 1737 TTGAGTAATAAAATGTTGTGTGACAAATATATAATAAT 1774
> AT3G44670.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr3:16216950-16221617 FORWARD LENGTH=3965
Length=3965
Score = 113 bits (61), Expect = 5e-24
Identities = 95/110 (86%), Gaps = 8/110 (7%)
Strand=Plus/Plus
Query 143 ATGGGTTCTGTTATGAGTTTGAGCTGTTCCAAGAGGAAAGCAACGAGTCAGGACGTTGAG 202
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 114 ATGGGTTCTGTAATGAGCTTGGGCTGTTCCAAGAGGAAAGCAACGAGTCAGGATGTT--G 171
Query 203 TATTCAAGTGAATCTCGTAAAAGACGAAAGATATGTTCAGAGAA-CGATG 251
|||| |||||||||||||||||||||||||| ||| | || |||||
Sbjct 172 -ATTC---CGAATCTCGTAAAAGACGAAAGATATGCTCA-ACAAACGATG 216
> AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr3:16195984-16200595 FORWARD LENGTH=4031
Length=4031
Score = 102 bits (55), Expect = 1e-20
Identities = 93/110 (85%), Gaps = 8/110 (7%)
Strand=Plus/Plus
Query 143 ATGGGTTCTGTTATGAGTTTGAGCTGTTCCAAGAGGAAAGCAACGAGTCAGGACGTTGAG 202
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 124 ATGGGTTCTGCAATGAGCTTGAGCTGTTCCAAGAGGAAAGCAACGAGTCAGGATGTTGA- 182
Query 203 TATTCAAGTGAATCTCGTAAAAGACGAAAGATATGTTCAGAGAA-CGATG 251
| | | | ||||| ||||||||||||||| ||| ||| | || |||||
Sbjct 183 T-TCC--G--AATCTTGTAAAAGACGAAAGACATGCTCA-ACAAACGATG 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86545739580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5