BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472439
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22050.1 | Symbols: MUB6 | membrane-anchored ubiquitin-fold ... 863 0.0
> AT1G22050.1 | Symbols: MUB6 | membrane-anchored ubiquitin-fold
protein 6 precursor | chr1:7771670-7773154 FORWARD LENGTH=898
Length=898
Score = 863 bits (467), Expect = 0.0
Identities = 673/762 (88%), Gaps = 56/762 (7%)
Strand=Plus/Plus
Query 20 tct-tcttcttcttcttcCTAAATTTCTTTCCACGAGGATTGATTTGGG-TT-T-TTG-- 73
||| |||| |||||||||||||||||||||||||||| ||||||||||| || | |||
Sbjct 14 TCTCTCTT-TTCTTCTTCCTAAATTTCTTTCCACGAGAATTGATTTGGGTTTGTGTTGTT 72
Query 74 ----T-TGt-tttttt--G-----G-AATTGGGTTGGTGAAAAATCAAGCCTG-TAAAGT 118
| | | |||||| | | ||||||||||||| ||| || |||| |||||
Sbjct 73 TTTTTCTTTCTTTTTTGGGTTTTTGTAATTGGGTTGGTG---AAT-AATCCTGCAAAAGT 128
Query 119 GTTCGATGATTTTCCCCAGAGAAGAATTTTGAAGTTTCTC-------------ttttt-t 164
|||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 129 GTTCGATGATTTTCTCCAGAGAAGAATTTTGAAGTTTCTCTTTTTAGAGATTTTTTTTGT 188
Query 165 t-tt---g-tttttG----CTGGGGAAAATTGAAAGGACATGGCAGGTGAAGAAGATTGG 215
| || | |||||| |||||| ||||||||| || |||||||||||||||||||||
Sbjct 189 TGTTGGGGTTTTTTGTTTTCTGGGGGAAATTGAAAAGAGATGGCAGGTGAAGAAGATTGG 248
Query 216 ATAGAACTCAAGTTTAGACTAGCAGATGGTACAGACATAGGTCCAAGCAAGTACAATCAA 275
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 249 ATAGAACTAAAGTTTAGACTAGCAGATGGTACAGACATAGGTCCAAGCAAGTATAATCAA 308
Query 276 TCTATGACTGTTTCTTCTCTTAAAGAGAAACTCATTTCTCAATGGCCTAAAGATAAAGAA 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCTATGACTGTTTCTTCTCTTAAAGAGAAACTCATTTCTCAATGGCCTAAAGATAAAGAA 368
Query 336 AATACTCCAAAAACTGTAAATGATATGAAGCTTATCAATGCCGGGAAAATACTGGAGAAC 395
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 369 AATACTCCAAAAACTGTAAATGATATGAAGCTCATCAATGCCGGGAAAATACTGGAGAAC 428
Query 396 AATAGGACACTTGCTGAATCTAGGCTTCCTGTTTGTGAACTTCCTGGAATGGTCATTACT 455
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 429 AATAGGACACTTGCTGAATCCAGGCTTCCTGTTTGTGAACTTCCTGGAATGATCATTACT 488
Query 456 ATGCATGTTGTTCTTCGCCTTCCTAC-TCTAGACAAAAAGAGCGAAAAACAGCAGAATGA 514
|||||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 489 ATGCATATTGTTCTTCGCCTTCCTACGT-TAGACAAAAAGAGCGAAAAACTGCAGAATGA 547
Query 515 TCCACCGATGAAGAATCGATGCGTGTGTACCATTTTGTAGCTGCAAGTAAATTGGATCAC 574
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 548 TCCACCGATGAAGAATCGCTGCGTGTGCACCATTTTGTAGCTGCAAGTAAATTGGATCAT 607
Query 575 AGAGATTTATATCCTTCATGATAATGGT--TGGCATAGATACTTCATAGAACAGCTTCCG 632
|||||||||||||| ||||||| |||| | | || ||| || || ||||| |||||
Sbjct 608 AGAGATTTATATCCGTCATGATCATGGCACTAG-AT-GATGCTCCACGGAACAACTTCCA 665
Query 633 TAGCTTCAAACAAGCTTTGAGAAGTTCCTTCAGTACAAAATGATTGGCATAGATATTGAA 692
| || |||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 666 TGGCATCAAACAAGCTTTGAGAAGTTCCTTCAGTACAGAATGATTGGCATAGGCAT-GAA 724
Query 693 AACAAAAGATCTTCATTACAGAATTTGGTTCCATGTGTGTGG 734
||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AACAAAAGATCTTCATTACAGAATTTGGTTCCATGTGTGTGG 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35616010223
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5