BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472444
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22110.1 | Symbols: | structural constituent of ribosome | ... 1495 0.0
> AT1G22110.1 | Symbols: | structural constituent of ribosome
| chr1:7800507-7802562 REVERSE LENGTH=2056
Length=2056
Score = 1495 bits (809), Expect = 0.0
Identities = 979/1056 (93%), Gaps = 32/1056 (3%)
Strand=Plus/Plus
Query 1 ATAAAATAAAAGAAACAAAACCCAGGAAATAAAAAGAATTGATAtttttttgttgggttt 60
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATAAAATAAAAGAAACAAAACCCATTAAA-AAAAA-AATTGATATTTTTTTGTTGGGTTT 58
Query 61 tgttatttttattttCTTATAAAATCCAGATATGGAGAGAGCCTTTTCTTCCTCTGACTC 120
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 59 TGTTATTTTTATTTTCTTGTAAAATCCAGATATGGAGAGAGCCTCTTCTTCCTCTGACTC 118
Query 121 ATCATCATCCATGCCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTC 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATCATCATCCATGGCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTC 178
Query 181 ACCTTTCGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGG 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACCTTTTGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGG 238
Query 241 TGACTACATCGGGACAGAGAGCTGCTTTGACGTCCTCTCCGCTGACGAAGAAAACGATGT 300
|||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 239 AGACTACATCGGGACAGAGAGCTGCTTCGACATCCTCTCCGCTGACGAAGGGAACGATGT 298
Query 301 CGTCTCCGTTACGTCCGAGTCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGGAGgagaga 360
||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGTCTCCGTTGCGTCGGAGCCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGGAGGAGAGA 358
Query 361 agagagagaAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCGCCGATACCGTTGCTTGC 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 GGAGAGAGAAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCTCCGATACCGTTGCTTGC 418
Query 421 TCAGACGGGGAATCTCCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACGAGCGA 480
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 TCAGACGGGGAATCTTCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACCAGCGA 478
Query 481 CGGGAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAG 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGCAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAG 538
Query 541 ATCCAATGGTCGTCTCACTCTTCACCTTGTTCCTTTAGACGATGACGTTTTTGAACTTCC 600
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 539 ATCCAATGGTCGTCTCACTCTCCACCTTGTTCCTTTAGACGATGATGTTTTTGATCTTCC 598
Query 601 TCAAGAACCCTCTCATTACCAAAgtgatgatgataacgatgatgaagaggatggtgatga 660
||||||||||||||||||||||||||||||||| | || ||||| || ||||
Sbjct 599 TCAAGAACCCTCTCATTACCAAAGTGATGATGA-A--GAGGATGA------TG---ATGA 646
Query 661 tcagtgtgatgatcaggatgaatgtgatgatgatcagcatcaagaggtggaagatgatTT 720
| ||||||||| ||||||| || ||||||||| | || ||||||||||||||||||||
Sbjct 647 --A-TGTGATGATGAGGATGAGTGCGATGATGATGATCAGCAAGAGGTGGAAGATGATTT 703
Query 721 GGATGATCTGGCGGATAAGATTAATAAGGATGTTGCTAGCAATGCCTCTAATGATGATGA 780
|||||||||||||||||||||||||||||||||| ||| | | |||||||||||
Sbjct 704 GGATGATCTGGCGGATAAGATTAATAAGGATGTTACTA----T---T--AATGATGATGA 754
Query 781 TAAGGGCAATGTGCATGGTGATAGTGAAGATGGATATAGAAAGGTTATCTTAGCGGCGGT 840
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 755 TAAGGGCAATGTGCATGGTGATAGTGATGATGGATATAGGAAGGTTATATTAGCGGCGGT 814
Query 841 GGGGGAGGAGACGGTGGGGGAGAGTGGAGTGATGGTCGGAGGAGGAGGATCGCCAAGAGG 900
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 815 GGGGGAGGAGACGGTGGTGGAGAGTGGAATGATGGTCGGAGGAGGAGGATCGCCGAGAGG 874
Query 901 AAAGTGTTTGAAGTCTTGTTTTGTTGGTATGAGAGTTCGTGAGATAAGACCAGTTCTTAG 960
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 875 AAAGTGTTTGAAGTCATGTTTTGTTGGTATGAGAGTTCATGAGATAAGACCAGTTCTTAG 934
Query 961 TTGATTCTTATTATTATTAATTA-GTAGTTCTTGTTAATTAGCATCtttttttttGGGTG 1019
||||| || ||||||||| ||| |||||||||||| |||||||||||||| |||||
Sbjct 935 TTGATAATTCTTATTATTA-TTAAGTAGTTCTTGTTGATTAGCATCTTTTT----GGGTG 989
Query 1020 GAAAACAAGATTATTATCGAAGAGAGCAATAAAAtt 1055
|||||||||||||||||| ||||||| |||||||||
Sbjct 990 GAAAACAAGATTATTATCTAAGAGAGTAATAAAATT 1025
Score = 590 bits (319), Expect = 2e-167
Identities = 495/573 (86%), Gaps = 40/573 (7%)
Strand=Plus/Plus
Query 1195 ATAAAATCGAATCGTAATCTCCTTTAAAGGAAAATAATAGTAATTGAAT-AAAAGAATTC 1253
|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||
Sbjct 1289 ATAAAATCGAATCGTAATTTCCTTTAAAGGAAAATAGTAGTAATTGAATAAAAAGATTTT 1348
Query 1254 CAAAGACCGAAGAAATGCaaaaaaaaaaaaaaaaGGGGAAGAAACATAACAGCTAATATT 1313
|| ||| ||||||||||| ||| ||||||||| |||||||||||||||||| ||||||
Sbjct 1349 CAGAGAGCGAAGAAATGC---AAAGAAAAAAAAA-GGGAAGAAACATAACAGCGAATATT 1404
Query 1314 CGATAATCCATATGGTGCAAAGTGAAAACAGCTAATATTGTTGTTCATTTTTGTAGAGAA 1373
|||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||| |||||
Sbjct 1405 CGATAAACCATATGGTGC-AAGTGCAAACAGCTAATATTGTTATTCGTTTTTGGGGAGAA 1463
Query 1374 TTTAAATTTCTAGGAAATCGATATTGAATTGACTTATACCTT--AA---AG-TA------ 1421
||||| ||| |||||||| ||| |||||||||||| |||||| || || ||
Sbjct 1464 TTTAAGTTTATAGGAAATTGATTTTGAATTGACTTCTACCTTAAAATCCAGCTATGTTCT 1523
Query 1422 --T-T-TATCACTTCAAAAATCGTATGT-CGAACAAAAAATATATATCCTGTAAGATAAA 1476
| | |||||||||||||||||||| | | | || | |||||||||||||||||||||
Sbjct 1524 CGTATCTATCACTTCAAAAATCGTATCTACTTA-AATACATATATATCCTGTAAGATAAA 1582
Query 1477 CGAGGTCATTTTGTGTACGAAATCAGAAACG-AACCAAA-ATCTCATAC--CAACACCaa 1532
|||| |||||||| ||| |||||||| || | || |||| || | || | | | | |
Sbjct 1583 CGAGATCATTTTGAGTAAGAAATCAG-AA-GTAAACAAATATATAAT-CTTTTATA-C-A 1637
Query 1533 aaaaaaaaaaaTTGAGAAA-AAGAGAAGCCAATAAGGGAGAATAAAAGGTACGGAGAAAA 1591
||||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1638 AAAAAAAAAAACTGAAAAAGAAAAGAAGCCAATAAGGGAGAATAAAAGGTACGGAGAAAA 1697
Query 1592 ATG-TAAGTACAGCTAAGAT-AGAAAGAT--AGAGAGTTTCCCGATGAATTTTAAGACAG 1647
||| |||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 1698 ATGTTAAGTACAGCTAAGATAAGAAAGATAGAGAGAGTTTCCCGATGAATATTAAGACAG 1757
Query 1648 AGACACTTAACTTAACTCTGTCTTCTGTAATTTGTCAGTTCCTCATCATTGGT-CTTTCC 1706
|||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1758 AGACACTT-ACTTAACTCTGTCTTCTGCAATTTGTCAGTTCCTCATCATTGGTCCTTTCC 1816
Query 1707 CACCACCTGATCTCTTGTCCTATATTCCCCTCC 1739
|||||||||||||||||||||||||||||||||
Sbjct 1817 CACCACCTGATCTCTTGTCCTATATTCCCCTCC 1849
Score = 124 bits (67), Expect = 2e-27
Identities = 75/79 (95%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1054 tttttttCATGAGAAAAAGTTGTTTGTTTTTGTAATCTTCAGAGGCTATGGTGTAATTTA 1113
||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1059 TTTTTTTCATGAGGAAATGTTGTTTATTTTTGTAATCTTCAGAGGCTATGGTGTAATTTA 1118
Query 1114 GCTTCTTTTAGATGttttt 1132
||||||||||||||||||
Sbjct 1119 TCTTCTTTTAGATGTTTTT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89005566285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5