BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472444 Length=1799 Score E Sequences producing significant alignments: (Bits) Value AT1G22110.1 | Symbols: | structural constituent of ribosome | ... 1495 0.0 > AT1G22110.1 | Symbols: | structural constituent of ribosome | chr1:7800507-7802562 REVERSE LENGTH=2056 Length=2056 Score = 1495 bits (809), Expect = 0.0 Identities = 979/1056 (93%), Gaps = 32/1056 (3%) Strand=Plus/Plus Query 1 ATAAAATAAAAGAAACAAAACCCAGGAAATAAAAAGAATTGATAtttttttgttgggttt 60 |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| Sbjct 1 ATAAAATAAAAGAAACAAAACCCATTAAA-AAAAA-AATTGATATTTTTTTGTTGGGTTT 58 Query 61 tgttatttttattttCTTATAAAATCCAGATATGGAGAGAGCCTTTTCTTCCTCTGACTC 120 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 59 TGTTATTTTTATTTTCTTGTAAAATCCAGATATGGAGAGAGCCTCTTCTTCCTCTGACTC 118 Query 121 ATCATCATCCATGCCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTC 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 ATCATCATCCATGGCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTC 178 Query 181 ACCTTTCGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGG 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 ACCTTTTGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGG 238 Query 241 TGACTACATCGGGACAGAGAGCTGCTTTGACGTCCTCTCCGCTGACGAAGAAAACGATGT 300 |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| Sbjct 239 AGACTACATCGGGACAGAGAGCTGCTTCGACATCCTCTCCGCTGACGAAGGGAACGATGT 298 Query 301 CGTCTCCGTTACGTCCGAGTCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGGAGgagaga 360 ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 299 TGTCTCCGTTGCGTCGGAGCCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGGAGGAGAGA 358 Query 361 agagagagaAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCGCCGATACCGTTGCTTGC 420 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 359 GGAGAGAGAAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCTCCGATACCGTTGCTTGC 418 Query 421 TCAGACGGGGAATCTCCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACGAGCGA 480 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 419 TCAGACGGGGAATCTTCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACCAGCGA 478 Query 481 CGGGAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAG 540 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CGGCAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAG 538 Query 541 ATCCAATGGTCGTCTCACTCTTCACCTTGTTCCTTTAGACGATGACGTTTTTGAACTTCC 600 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct 539 ATCCAATGGTCGTCTCACTCTCCACCTTGTTCCTTTAGACGATGATGTTTTTGATCTTCC 598 Query 601 TCAAGAACCCTCTCATTACCAAAgtgatgatgataacgatgatgaagaggatggtgatga 660 ||||||||||||||||||||||||||||||||| | || ||||| || |||| Sbjct 599 TCAAGAACCCTCTCATTACCAAAGTGATGATGA-A--GAGGATGA------TG---ATGA 646 Query 661 tcagtgtgatgatcaggatgaatgtgatgatgatcagcatcaagaggtggaagatgatTT 720 | ||||||||| ||||||| || ||||||||| | || |||||||||||||||||||| Sbjct 647 --A-TGTGATGATGAGGATGAGTGCGATGATGATGATCAGCAAGAGGTGGAAGATGATTT 703 Query 721 GGATGATCTGGCGGATAAGATTAATAAGGATGTTGCTAGCAATGCCTCTAATGATGATGA 780 |||||||||||||||||||||||||||||||||| ||| | | ||||||||||| Sbjct 704 GGATGATCTGGCGGATAAGATTAATAAGGATGTTACTA----T---T--AATGATGATGA 754 Query 781 TAAGGGCAATGTGCATGGTGATAGTGAAGATGGATATAGAAAGGTTATCTTAGCGGCGGT 840 ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 755 TAAGGGCAATGTGCATGGTGATAGTGATGATGGATATAGGAAGGTTATATTAGCGGCGGT 814 Query 841 GGGGGAGGAGACGGTGGGGGAGAGTGGAGTGATGGTCGGAGGAGGAGGATCGCCAAGAGG 900 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| Sbjct 815 GGGGGAGGAGACGGTGGTGGAGAGTGGAATGATGGTCGGAGGAGGAGGATCGCCGAGAGG 874 Query 901 AAAGTGTTTGAAGTCTTGTTTTGTTGGTATGAGAGTTCGTGAGATAAGACCAGTTCTTAG 960 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 875 AAAGTGTTTGAAGTCATGTTTTGTTGGTATGAGAGTTCATGAGATAAGACCAGTTCTTAG 934 Query 961 TTGATTCTTATTATTATTAATTA-GTAGTTCTTGTTAATTAGCATCtttttttttGGGTG 1019 ||||| || ||||||||| ||| |||||||||||| |||||||||||||| ||||| Sbjct 935 TTGATAATTCTTATTATTA-TTAAGTAGTTCTTGTTGATTAGCATCTTTTT----GGGTG 989 Query 1020 GAAAACAAGATTATTATCGAAGAGAGCAATAAAAtt 1055 |||||||||||||||||| ||||||| ||||||||| Sbjct 990 GAAAACAAGATTATTATCTAAGAGAGTAATAAAATT 1025 Score = 590 bits (319), Expect = 2e-167 Identities = 495/573 (86%), Gaps = 40/573 (7%) Strand=Plus/Plus Query 1195 ATAAAATCGAATCGTAATCTCCTTTAAAGGAAAATAATAGTAATTGAAT-AAAAGAATTC 1253 |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| || Sbjct 1289 ATAAAATCGAATCGTAATTTCCTTTAAAGGAAAATAGTAGTAATTGAATAAAAAGATTTT 1348 Query 1254 CAAAGACCGAAGAAATGCaaaaaaaaaaaaaaaaGGGGAAGAAACATAACAGCTAATATT 1313 || ||| ||||||||||| ||| ||||||||| |||||||||||||||||| |||||| Sbjct 1349 CAGAGAGCGAAGAAATGC---AAAGAAAAAAAAA-GGGAAGAAACATAACAGCGAATATT 1404 Query 1314 CGATAATCCATATGGTGCAAAGTGAAAACAGCTAATATTGTTGTTCATTTTTGTAGAGAA 1373 |||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||| ||||| Sbjct 1405 CGATAAACCATATGGTGC-AAGTGCAAACAGCTAATATTGTTATTCGTTTTTGGGGAGAA 1463 Query 1374 TTTAAATTTCTAGGAAATCGATATTGAATTGACTTATACCTT--AA---AG-TA------ 1421 ||||| ||| |||||||| ||| |||||||||||| |||||| || || || Sbjct 1464 TTTAAGTTTATAGGAAATTGATTTTGAATTGACTTCTACCTTAAAATCCAGCTATGTTCT 1523 Query 1422 --T-T-TATCACTTCAAAAATCGTATGT-CGAACAAAAAATATATATCCTGTAAGATAAA 1476 | | |||||||||||||||||||| | | | || | ||||||||||||||||||||| Sbjct 1524 CGTATCTATCACTTCAAAAATCGTATCTACTTA-AATACATATATATCCTGTAAGATAAA 1582 Query 1477 CGAGGTCATTTTGTGTACGAAATCAGAAACG-AACCAAA-ATCTCATAC--CAACACCaa 1532 |||| |||||||| ||| |||||||| || | || |||| || | || | | | | | Sbjct 1583 CGAGATCATTTTGAGTAAGAAATCAG-AA-GTAAACAAATATATAAT-CTTTTATA-C-A 1637 Query 1533 aaaaaaaaaaaTTGAGAAA-AAGAGAAGCCAATAAGGGAGAATAAAAGGTACGGAGAAAA 1591 ||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1638 AAAAAAAAAAACTGAAAAAGAAAAGAAGCCAATAAGGGAGAATAAAAGGTACGGAGAAAA 1697 Query 1592 ATG-TAAGTACAGCTAAGAT-AGAAAGAT--AGAGAGTTTCCCGATGAATTTTAAGACAG 1647 ||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| Sbjct 1698 ATGTTAAGTACAGCTAAGATAAGAAAGATAGAGAGAGTTTCCCGATGAATATTAAGACAG 1757 Query 1648 AGACACTTAACTTAACTCTGTCTTCTGTAATTTGTCAGTTCCTCATCATTGGT-CTTTCC 1706 |||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1758 AGACACTT-ACTTAACTCTGTCTTCTGCAATTTGTCAGTTCCTCATCATTGGTCCTTTCC 1816 Query 1707 CACCACCTGATCTCTTGTCCTATATTCCCCTCC 1739 ||||||||||||||||||||||||||||||||| Sbjct 1817 CACCACCTGATCTCTTGTCCTATATTCCCCTCC 1849 Score = 124 bits (67), Expect = 2e-27 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 1054 tttttttCATGAGAAAAAGTTGTTTGTTTTTGTAATCTTCAGAGGCTATGGTGTAATTTA 1113 ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1059 TTTTTTTCATGAGGAAATGTTGTTTATTTTTGTAATCTTCAGAGGCTATGGTGTAATTTA 1118 Query 1114 GCTTCTTTTAGATGttttt 1132 |||||||||||||||||| Sbjct 1119 TCTTCTTTTAGATGTTTTT 1137 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89005566285 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5