BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472449
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22160.1 | Symbols: | Protein of unknown function (DUF581) ... 1013 0.0
> AT1G22160.1 | Symbols: | Protein of unknown function (DUF581)
| chr1:7823149-7823971 FORWARD LENGTH=730
Length=730
Score = 1013 bits (548), Expect = 0.0
Identities = 674/730 (92%), Gaps = 27/730 (4%)
Strand=Plus/Plus
Query 1 ACTTCCCTCTTTCTCTCTTTCACTTTGCTCTGTTCACTCAGAGCATC-AAGAAACAAAAG 59
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ACTTCCCTCTTTCTCTCTTTCACTTTGCTCTGTTCACTCAGAGCATCAAATAAACAAAAG 60
Query 60 AGAGAAACCAAAAACACACAATACTAACGATGTTGCTAGGGAAGAGACAGAGACCACCAA 119
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGAAACCAAAACCACACAAGACTAACGATGTTGCTAGGGAAGAGACAGAGACCACCAA 120
Query 120 TAAAGAGAACCACGAGTCTCTCTGAGATCAAGTTCGATTTGAATCAACCTAGCGAACAAG 179
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TAAAGAGAACCACGAGTCTATCTGAGATTAAGTTCGATTTGAATCAACCTAGCGAACAAG 180
Query 180 AACCATCCAATCATCAGATTCAGCTCGTGGCCGTTGATGAACACCGTCAAGTTCATCAAC 239
|||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 181 AACCATCCGATCATCAGATTCAGCTTGTGAACGTTGATGAACATCGTCAAGTTCATCAAA 240
Query 240 GATTGTTAGATCAACGGCTCTTAGCGATGGTCTCACCAAGAGGTACACAGAGAAGACACT 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTGTTAGATCAACGGCTTTTAGCGATGGTCTCACCAAGAGGTACACAGAGAAGACACT 300
Query 300 CAAGTGATTACTCTGAAGATTTTCTGAGATCTTGCTCTCTTTGTAAACGTCATCTTGTTC 359
|||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 301 CAAGTGATTATTCTGAAGATTTTCTAAGATCTTGCTCTCTTTGTAAACGTCTTCTTGTTC 360
Query 360 CTGGCCGTGACATCTATATGTATAGAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGGCCGTGACATCTATATGTATAGAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC 420
Query 420 AACAACAAATTACAGTGGACGAGA--A-G-A-AAG--G-----TTCGGTGAGGTCCACCG 467
|||||||||||||||||||||||| | | | ||| | ||||||||||||||||
Sbjct 421 AACAACAAATTACAGTGGACGAGAGGAAGGAGAAGAAGAAAGGTTCGGTGAGGTCCACCA 480
Query 468 TCGTCGTAGCCGCCGGAACCACCACTGGAGAGAGAGTTTCCGCCGCCGTGTAGGTCTCTT 527
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TCGTCGTCGCCACCGGAACCACCACAGGAGAGAGAGTTTCCGCCGCCGTGTAGGTCTCTT 540
Query 528 T-ACATATATTATGTAATATCGGTAATGATTGTATTATATGCCTGGTTCTTGTAATTTTA 586
| |||||| |||| || |||||||||||||||||||||||| | ||||||| ||| |
Sbjct 541 TTACATATGTTATATATTATCGGTAATGATTGTATTATATG---G-TTCTTGT--TTT-A 593
Query 587 TGTATAAAAAGCATTGAGGA-T-T-GACTGTGATTAACCATGTTAATCATCCTATAAACT 643
|||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||
Sbjct 594 TGTATAAAAAGCATTGAGCACTATTGACTGTGATTAACCATGTTAATCATCCTTTAAACC 653
Query 644 TTGCTTTTAATCTTAAGAATTATTGTGTTTTGCATATTAATTATTAGATTTGTGTTCTAC 703
|||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 654 TTGCTTTTGATCTTAAGAATTATTGTATTATGCATATTAATTA---GATTTGTGTTCTAC 710
Query 704 TGATTATTCT 713
||||||||||
Sbjct 711 TGATTATTCT 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34561093136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5