BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472450
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22170.1 | Symbols: | Phosphoglycerate mutase family protei... 1821 0.0
AT1G78050.1 | Symbols: PGM | phosphoglycerate/bisphosphoglycera... 821 0.0
> AT1G22170.1 | Symbols: | Phosphoglycerate mutase family protein
| chr1:7826289-7828326 FORWARD LENGTH=1392
Length=1392
Score = 1821 bits (986), Expect = 0.0
Identities = 1161/1242 (93%), Gaps = 25/1242 (2%)
Strand=Plus/Plus
Query 1 TTTTTTGTGTTGGGTAA-TTTCTCCTCGTCATTGGTTTCATCGACATTGATTACTAGAAC 59
|||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 55 TTTTTTCTGTTGGGTAATTTTCTACTCGTCATTGGTTTCATCGACATTGA--ACTAGAAC 112
Query 60 CAGAATGGCTACGGCTACGTTTCACCAATCAATCGTTTCATTTGC-T-TCT-C---C-T- 111
|||||||||||| ||||||| |||||||||| ||||||||||||| | ||| | | |
Sbjct 113 CAGAATGGCTACTGCTACGTCTCACCAATCAGTCGTTTCATTTGCTTCTCTCCGGTCTTC 172
Query 112 T-CTTC--C-ACAATCTCTCAATGTGGATTCAAGATCGATTCTTCACTGAGTTTTACCTC 167
| |||| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 173 TCCTTCTTCTACAATCTCTCAATGTGGATTCAAGATCGATTCTTCACTGAGCTTTACATC 232
Query 168 AAAAAAGATAAACTTTTGCAAGATTAAAGCAATGG---CATCAGTTTCTTATAACAACAC 224
||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 233 GAAAAAGACAAACTTTTGCAAGATTAAAGCAATGGCATCATCAGTTTCTTATGACAACAC 292
Query 225 TCTCTTGTCTCCTTCCAAGACCATCCCTGACAATTCTCTAAAGAAATCAAATGAAGCAGC 284
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 293 TCTCTTGTCTCCTTCCAAGACAATCCCTGACAATTCTCAAAAGAAATCAAATGAAGCAGC 352
Query 285 TTTGATATTGATTAGGCATGGAGAATCTTTGTGGAACGAGAAGAATCTTTTTACGGGCTG 344
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 353 TTTGATATTGATTAGGCATGGAGAATCTTTATGGAACGAGAAGAATCTTTTTACTGGTTG 412
Query 345 TGTTGATGTGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGAT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TGTTGATGTGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGAT 472
Query 405 TAGTAACATACCTGTTGATGTTATCTTTACATCGTCTTTGATTCGTGCTCAGATGACTGC 464
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 473 TAGTAACATTCCTGTTGATGTTATCTTTACATCTTCTTTGATTCGTGCTCAGATGACTGC 532
Query 465 AATGCTTGCTATGATTCAACACCGTCGTAAGAAGGTTCCGATAATCTTGCATGATGAAAG 524
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 533 AATGCTTGCTATGATTCAACACCGTCGTAAGAAGGTACCGATCATCTTGCACGATGAAAG 592
Query 525 CGAACAGGCGAAAACTTGGAGTCAAGTTTTCAGTGATGAGACTAAAAACCAATCCATTCC 584
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 593 CGAACAGGCGAAAACTTGGAGTCAAGTTTTTAGTGATGAGACTAAAAACCAATCCATTCC 652
Query 585 TGTCATACCCGCTTGGCAGCTTAATGAAAGAATGTATGGAGAATTGCAAGGTCTTAACAA 644
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 653 TGTCATACCTGCTTGGCAGCTCAATGAAAGAATGTATGGAGAATTACAAGGTCTTAACAA 712
Query 645 GCAAGAAACAGCGGAAAGATACGGGAAACAGCAAGTTCACGAATGGCGTAGGAGTTATGA 704
|||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 713 GCAAGAAACAGCCGAGAGATATGGGAAAGAGCAAGTTCACGAATGGCGTAGGAGTTATGA 772
Query 705 CATTCCTCCTCCCAAAGGCGAGAGCTTGGAGATGTGTGCTGAAAGAGCAGTGGCTTATTT 764
||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 773 TATTCCTCCTCCCAAAGGAGAGAGTTTGGAGATGTGTGCTGAGAGAGCAGTAGCTTATTT 832
Query 765 TCAGGACAATATCGAACCAAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTCACGG 824
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCAGGACAATATCGAACCGAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTCACGG 892
Query 825 GAACTCGCTGCGGTCTATCATAATGTATCTTGACAAATTGACTTGCCAGGAGGTGATAAG 884
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 893 GAACTCGCTGCGGTCTATCATTATGTATCTTGACAAATTGACTTGCCAGGAGGTGATAAG 952
Query 885 TCTAGAGCTATCGACCGGAATACCTCTTCTCTACATATTCAAAGAAGGCAAATTCATGAA 944
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TCTAGAGCTATCGACAGGTATACCTCTTCTCTACATATTCAAAGAAGGCAAATTCATGAA 1012
Query 945 GCGGGGAAGCCCGGTTGGTCCAACAGAAGCCGGTGTCTATGCTTATACCAAGAGATTGGC 1004
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1013 GCGGGGAAGCCCGGTTGGTCCAACAGAAGCTGGTGTTTATGCTTATACCAAGAGATTGGC 1072
Query 1005 TCAATACAGACAGAAGCTAGAGGAAGACAGTGAAGTAATCTGTTCCTGAAGTAAACTAGA 1064
|||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||
Sbjct 1073 TCAATACAGACAGAAGCTAGAGGACGATAGTGAAGTACTCTGTGCCTGAAGTAAACTAGA 1132
Query 1065 AAGATT-GGTTCTTGATCTACTCAACCCTCTTCCCTCAACCGTAGGAACTTAGGGGCAGT 1123
|| ||| ||||||| ||||||||||| |||||||| ||| | ||||| ||||| ||| ||
Sbjct 1133 AA-ATTTGGTTCTTCATCTACTCAACTCTCTTCCCACAAGCTTAGGACCTTAGAGGC-GT 1190
Query 1124 TTACAAAGCATATATAACTTCTGATCTTGTTCtttttttCTGGTTCTTTTTTCATTCATA 1183
|||||||| ||| |||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 1191 TTACAAAGAATACATAACTTCTGATTTTGTTCTTTTTTTCTGGTTCTTCTT-CATTCATA 1249
Query 1184 TGTGTCATATCCAT---TGTTACCTGAAGGATAATGTTCAAA 1222
||||||||| ||| |||||||||||||||||||||||||
Sbjct 1250 TGTGTCATAACCACCACTGTTACCTGAAGGATAATGTTCAAA 1291
> AT1G78050.1 | Symbols: PGM | phosphoglycerate/bisphosphoglycerate
mutase | chr1:29347581-29349755 FORWARD LENGTH=1553
Length=1553
Score = 821 bits (444), Expect = 0.0
Identities = 688/804 (86%), Gaps = 24/804 (3%)
Strand=Plus/Plus
Query 231 GTCTCCTTCCAAG-ACCATCC-C-TGACAATTCTCTA-AAGAAATCAAATGAAGCAGCTT 286
||||||||||||| || | || | || || ||| | ||||||||||||||||||||||
Sbjct 577 GTCTCCTTCCAAGAACAAACCACATG--AA-TCT-AAGAAGAAATCAAATGAAGCAGCTT 632
Query 287 TGATATTGATTAGGCATGGAGAATCTTTGTGGAACGAGAAGAATCTTTTT-ACGGGCTGT 345
||||||||||||||||||||||||| || ||||| ||||||||| || || ||||| |||
Sbjct 633 TGATATTGATTAGGCATGGAGAATCGTTATGGAATGAGAAGAAT-TTGTTCACGGGTTGT 691
Query 346 GTTGATGTGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGATT 405
|||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||
Sbjct 692 GTTGATGTGCCATTGACTCAGAAAGGTGTTGGAGAAGCTATTGAAGCTGGGAAGAAGATT 751
Query 406 AGTAACATACCTGTTGATGTT-ATCTTT-ACATCGTCTTTGATTCGTGCTCAGATGACTG 463
|||||||| ||||| ||| || || ||| || || ||||| || ||||||||||||||||
Sbjct 752 AGTAACATTCCTGTAGAT-TTGAT-TTTCACTTCTTCTTTAATCCGTGCTCAGATGACTG 809
Query 464 CAATGCTTGCTATGATTCAACACCGTCGTAAGAAGGTTCCGATAATCTTGCATGATGAAA 523
|||||||||| |||| ||| || ||||| ||||||||||| || |||||||| | || |
Sbjct 810 CAATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAACGAGA 869
Query 524 GCG-AACAGGCGAAAACTTGGAGTCAAGTTTTCAGTGATGAGACTA-AAAACCAATCCAT 581
| | || ||||||||||||||||||| |||||||| || || |||| ||||| |||| ||
Sbjct 870 GTGTAA-AGGCGAAAACTTGGAGTCATGTTTTCAGCGAAGAAACTAGAAAAC-AATCTAT 927
Query 582 TCCTGTCATACCCGCTTGGCAGCTTAATGAAAGAATGTATGGAGAATTGCAAGGTCTT-A 640
|| || ||| | |||||||| || ||||| |||||||||||||| ||||| ||| || |
Sbjct 928 CCCGGTTATAGCGGCTTGGCAACTGAATGAGAGAATGTATGGAGAGTTGCAGGGT-TTGA 986
Query 641 ACAAGCAAGAAACAGCGGAAAGATACGGGAAACAGCAAGTTCACGAATGGCGTAGGAGTT 700
||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 987 ACAAGAAAGAAACAGCGGAAAGATACGGGACACAACAAGTTCACGAATGGCGCAGGAGTT 1046
Query 701 ATGACATTCCTCCTCCCAAAGGCGAGAGCTTGGAGATGTGTGCTGAAAGAGCAGTGGCTT 760
| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1047 ACGAAATTCCTCCTCCGAAAGGCGAGAGCTTGGAGATGTGTGCTGAGAGAGCAGTGGCTT 1106
Query 761 ATTTTCAGGACAATATCGAACCAAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTC 820
||||| | ||||||||| ||||| |||||||| ||||||| || |||||||| |||||||
Sbjct 1107 ATTTTGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTC 1166
Query 821 ACGGGAACTCGCTGCGGTCTATCATAATGTATCTTGACAAATTGACTTGC-CAGGAGGTG 879
|||||||||| || | |||||||| |||||||||||| | || |||| | ||||||||
Sbjct 1167 ACGGGAACTCATTGAGATCTATCATTATGTATCTTGACGATTTAACTT-CTCAGGAGGTT 1225
Query 880 ATAAGTCTAGAGCTATCGACCGGAATACCTCTT-CTCTACATATTCAAAGAAGGCAAATT 938
| || |||||| || || || || |||| || |||||||| |||||||||||||| ||
Sbjct 1226 ACAACTCTAGACCTGTCCACAGGTGTACCA-TTGCTCTACATCTTCAAAGAAGGCAAGTT 1284
Query 939 CATGAAGCGGGGAAGCCCGGTTGGTCCAACAGAAGCCGGTGTCTATGCTTATACCAAGAG 998
|||||| || |||||||| || ||| | || ||||| ||||||||||||||||| |||||
Sbjct 1285 CATGAAACGAGGAAGCCCCGTCGGTTCTACTGAAGCTGGTGTCTATGCTTATACAAAGAG 1344
Query 999 ATTGGCTCAATACAGACAGAAGCT 1022
|||||| ||||||||| |||||||
Sbjct 1345 ATTGGCACAATACAGAGAGAAGCT 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5