BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472456
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22200.1 | Symbols: | Endoplasmic reticulum vesicle transpo... 2436 0.0
> AT1G22200.1 | Symbols: | Endoplasmic reticulum vesicle transporter
protein | chr1:7837591-7840788 REVERSE LENGTH=1613
Length=1613
Score = 2436 bits (1319), Expect = 0.0
Identities = 1440/1496 (96%), Gaps = 17/1496 (1%)
Strand=Plus/Plus
Query 2 TTCTCTCTT-GCTTATTTTTGGGGAAGACAATTCCgagaaaatagagagtagaagagaag 60
|||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 11 TTCTCT-TTAGCTTATTTTTGGGGAAGACAATTCCGAGAAAATAGAGAGT--------AG 61
Query 61 agagaTCCTAAAAG-GTCAAAAGAGGTCAGGTGATTGATTAACCCGTTGAATCATCTCCT 119
||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 62 AGAGATCCT-AAAGAGTCAAAAGAGGTCAGGTGATTGATTAACCCGTTGAATAATCTCCT 120
Query 120 TCTCCCGTTGAATCGGGTCAAAATAGTTTGAACTTTAAGCCAAACCCTAGCTTGAGGAGG 179
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TCTCCCGTTGAATCGGGTCGAAATAG-TTGAACTTTAAGCCAAACCCTAGCTTGAGGAGG 179
Query 180 AAGAGGGAATGGTCGGCGTGATGAACAGATTGAGGAATCTGGACGCTTACCCTAAAATCA 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGA-GGAATGGTCGGCGTGATGAACAGATTGAGGAATCTGGACGCTTACCCTAAAATCA 238
Query 240 ATGAAGATTTCTACAGGCGTACTCTTTCTGGTGGTGTTATCACCCTTGTCTCTTCT-TTC 298
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 239 ATGAAGATTTCTACAGGCGTACTCTTTCTGGTGGTGTTATCACCCTCGCCTCTTCTATT- 297
Query 299 GTCATGCTAATTCTCTTCTTCTCCGAGCTTCAGCTGTATATTCACCCGGTTACTGAGACT 358
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 GTCATGCTAATTCTCTTCTTCTCCGAGCTTCAGCTGTACATTCACCCGGTTACTGAGACT 357
Query 359 CAGCTTCGTGTTGATACATCAAGAGGAGAGAAGCTACGCATTAATTTTGATGTTACATTC 418
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 CAGCTTCGTGTTGATACATCAAGAGGAGAGAAGCTACGGATTAATTTTGATGTTACATTC 417
Query 419 CCTGCGCTTCAATGTTCGATTATTAGTCTTGATTCCATGGATATCAGTGGAGAGAGGCAC 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 CCTGCGCTTCAATGTTCGATTATTAGTCTTGATTCCATGGATATCAGTGGGGAGAGGCAC 477
Query 479 CTTGATGTGCGACATGACATAATTAAAAGAAGATTAGACTCTTCTGGCAATGTGATCGAG 538
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 478 CTTGATGTGCGACATGACATTATTAAAAGGAGATTAGACTCTTCTGGCAATGTCATCGAG 537
Query 539 GCAAAACAAGATGGAATTGGTCATACTATGATTGAAAAACCTTTACAAAAACATGGTGGA 598
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 GCAAAACAAGACGGAATTGGTCATACTAAGATTGAAAAACCTTTACAAAAACATGGTGGA 597
Query 599 AGGTTGGAGCACAATGAAACATACTGTGGTTCCTGTTTTGGAGCCGAAGCGTCAGATGAT 658
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 AGGTTGGAACACAATGAAACATACTGTGGTTCCTGTTTTGGAGCAGAAGCGTCAGATGAT 657
Query 659 GCTTGTTGTAATTCATGTGAGGAAGTTCGTGAAGCTTACCGAAAGAAAGGTTGGGCCCTC 718
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GCTTGTTGTAATTCATGTGAGGAAGTTCGCGAAGCTTACCGAAAGAAAGGTTGGGCCCTC 717
Query 719 TCAGACCCTGAATCAATCGACCAGTGTAAAAGAGAAGGCTTTGTGCAAAAGGTCAAAGAC 778
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 TCGGACCCTGAATCAATCGACCAGTGTAAAAGAGAAGGCTTTGTGCAAAAGGTAAAAGAT 777
Query 779 GAAGAAGGTGAAGGTTGTAATGTTCATGGTTTCTTGGAAGTTAATAAAGTTGCTGGGAAC 838
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 778 GAAGAAGGTGAAGGTTGTAATGTTCACGGTTTCTTGGAAGTTAACAAAGTTGCTGGGAAC 837
Query 839 TTTCATTTCATCCCTGGGCAAAGCTTTCATCAATCCGGTTTTCAATTTCATGATATGTTA 898
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTTCATTTCATTCCTGGGCAAAGCTTTCATCAATCCGGTTTTCAATTTCATGATATGTTA 897
Query 899 TTGTTCCAGCAAGGCAACTACAATATTAGCCACAAGGTCAACAGGTTGGCCTTTGGGGAC 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 TTGTTCCAGCAAGGCAACTACAATATTAGCCACAAGGTCAACAGGTTGGCCTTTGGAGAC 957
Query 959 TTTTTCCCCGGTGTAGTGAACCCTCTTGATGGTGTGCAGTGGAATCAGGGGAAACAGAGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTTTTCCCCGGTGTAGTGAACCCTCTTGATGGTGTGCAGTGGAATCAGGGGAAACAGAGT 1017
Query 1019 GGCGTCTATCAATACTTCATCAAGGTGGTACCAAGCATATACACTGATGTTCACCAGAAT 1078
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 GGCGTCTATCAATACTTCATCAAGGTGGTACCAAGCATATACACCGATGTTCACCAGAAT 1077
Query 1079 ACAATTCAGTCAAACCAGTTCTCTGTGACAGAACATTTCCAAAACATGGAAGCAGGTCGC 1138
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 ACAATACAGTCAAACCAGTTCTCTGTGACAGAACATTTCCAGAACATGGAAGCAGGTCGC 1137
Query 1139 ATGCAATCTCCGCCTGGTGTTTTCTTCTACTATGATCTATCGCCGATTAAGGTGATATTT 1198
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 ATGCAATCTCCGCCTGGTGTTTTCTTCTACTATGATCTATCGCCAATTAAGGTGATATTT 1197
Query 1199 GAGGAGCAACATGTGGAGTTCTTGCACTTCCTAACAAATGTTTGCGCTATAGTTGGAGGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 GAGGAGCAACATGTGGAGTTCTTGCACTTCCTAACAAATGTTTGCGCTATAGTAGGAGGT 1257
Query 1259 ATCTTCACGGTATCAGGAATAGTAGATTCGTTCATATACCATGGACAACGAGCAATTAAG 1318
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATCTTCACGGTATCGGGAATAGTAGATTCGTTCATATACCATGGACAACGAGCAATTAAG 1317
Query 1319 AAGAAAATGGAGATTGGTAAATTCAACTGAGTTGTTTAATATCCTCCACACTTTCTTGAT 1378
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1318 AAGAAAATGGAGATTGGTAAATTCAACTGAGTTGTTTGATATTCTCCACACTTTCTTGAT 1377
Query 1379 CAGCGACTGGGGAATCATCTCGACGGCTTTTACGGTTAGACATTAGGTTTGAATTTGGTG 1438
|||| ||||| |||||||||| |||| |||||| ||||||||||||||||||||||| ||
Sbjct 1378 CAGCTACTGGAGAATCATCTCTACGGGTTTTACAGTTAGACATTAGGTTTGAATTTG-TG 1436
Query 1439 ACAATACGATGATTTAAAGAATTTTGCAGTACTGTAAGATATTTAAGGATCTGAAC 1494
||||| |||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1437 ACAATGCGATGATTTAAAGAATTTTGTAGTACTGTAAGATATTCCAGGATCTGAAC 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5