BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472458
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22220.1 | Symbols: | F-box family protein | chr1:7846602-7... 1149 0.0
AT1G78100.1 | Symbols: | F-box family protein | chr1:29387795-... 261 1e-68
> AT1G22220.1 | Symbols: | F-box family protein | chr1:7846602-7847802
FORWARD LENGTH=1201
Length=1201
Score = 1149 bits (622), Expect = 0.0
Identities = 859/971 (88%), Gaps = 25/971 (3%)
Strand=Plus/Plus
Query 61 TTTTGTAAGATGGACGTTTTCGATGGCCTTCCTGACCCGATCATCGTCGACATCTTGAAC 120
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 84 TTTTGTAAGATGGACGTTTTTGATGGACTTCCTGACCCGATCATCGTCGACATCTTGAAC 143
Query 121 AAAGTTGGTGACGTCAAAACCTTACTTCGTTGCA-CTTCTCTTTCAAAAAGATTCAGCTC 179
||||| ||||||||||||||||||||||| |||| | ||||||||||||||||| | |||
Sbjct 144 AAAGTCGGTGACGTCAAAACCTTACTTCGATGCAGC-TCTCTTTCAAAAAGATTTAACTC 202
Query 180 CCTTGTCCCTCAGTCTGAGTCACTCATCCTCCGACTCGACCACCCCG-ACTCCGATTCA- 237
||||||||||||||||||||||||| |||||||||||||||| | | | |||||||||
Sbjct 203 GCTTGTCCCTCAGTCTGAGTCACTCACCCTCCGACTCGACCACTCAGTA-TCCGATTCAC 261
Query 238 CC--AGTCACCAGTATCTTCCAATCCTTATTCAAGTCCTTTCACGGTCT-CTTCTCTCTT 294
|| ||||| || || |||| ||| |||||| | ||||||| || ||||||
Sbjct 262 CCGTCGTCACAAGCATTTTCCGATCTTTATTC-A--------ACGGTCTAGTT-TCTCTT 311
Query 295 TTCTCTAAACCGGCTAAACCGATCCCAGTCACGGCTCTCTCTCCGACTCTCCCCTCCAAG 354
|| || |||||||||||||| ||| || | || | |||||||||| |||||||| ||||
Sbjct 312 TTATCCAAACCGGCTAAACCAATCACAATAACCACCCTCTCTCCGAGTCTCCCCTTCAAG 371
Query 355 ATTCTCTCCCCGTTTGACAAGATCCGGAGTTTGGACGTCGAGCTTCACGGCGGCGATGTA 414
|||||||||| ||| ||| ||| || | | ||||||| ||||||| |||||||||||||
Sbjct 372 ATTCTCTCCCGGTTCGACCGGATTCGAAATCTGGACGTAGAGCTTCCCGGCGGCGATGTA 431
Query 415 AAGCTTGAAAAAGGCGCCGCCGTTAAGTGGAAAGCGGAGTTTGGGAAAACTCTCAAGAGC 474
||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 432 AAGCTCGAGAAAGGTGCAGCCGTTAAGTGGAAAGCTGAGTTTGGGAAAACACTCAAAAGC 491
Query 475 TGCGTCGTTGTCGCCTTCCGTTCCGCCGCTACCGTGTCTTCTCCCGTCGCCGTAGACGGT 534
|||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 492 TGCGTCATCGTCGCGTTCCGTTCCGCCGGTACCGTGTCTTCTCCCGTCGCCGTAGAAGGT 551
Query 535 GAGTCAGACGCCGAGTTTGTGACCGGACTGAAGACACGTGTCGTGTGGACGATAAGCGCG 594
||||||||||||||||| ||||| ||||||||||| || || |||||||| |||||||||
Sbjct 552 GAGTCAGACGCCGAGTTCGTGACTGGACTGAAGACGCGCGTGGTGTGGACTATAAGCGCG 611
Query 595 TTGATGGCTGCGTCGTCTCGTCATTACTTGATGAGAGAAGTCGTGAAGGAGCACGTGGAG 654
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 612 TTGATGGCTGCTTCGTCTCGTCATTACTTGATGAGAGAAGTCGTGAAGGAGCATGAGGAG 671
Query 655 ATGGAGAGTTTGA-TCATGCGTGACGTAGAAGGAGAGGGGACGGTGGTGATGGACGCGGA 713
|| || ||||| | | ||||||||| |||| |||| ||||||||||||||| ||| |||
Sbjct 672 ATAGAAAGTTT-AGTTATGCGTGACAAAGAAAGAGAAGGGACGGTGGTGATGAACGAGGA 730
Query 714 AGGGCTTAAAGAGTTTAGGAATACGGAGGCGCGTGTGGAAGACGAGGAGCGCGTGGTGAA 773
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 731 AGGGCTTAAAGAGTTAAGAAATACGGAGGCGCGTGTGGAAGACGAGGAGCGCGTGGTAAA 790
Query 774 AAAT-AGCAGGAGTGTTGTCCCGAGCGTGAGGATGAGTATGAGACACGCGCCGTCTCTTA 832
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AAATAAG-AGGAGTGTTGTCCCGAGCGTGAGGATGAGTATGAGACACGCGCCGTCTCTTA 849
Query 833 AACTTAAGAGTGGTATTTGTTTAGAATCTGCCACGCTTGTGATCATCCGTCCGAGTGGAG 892
|||||||||||||||| |||||||||||||| ||||||||||| | || ||||| ||||
Sbjct 850 AACTTAAGAGTGGTATCTGTTTAGAATCTGCTACGCTTGTGATTGTTCGACCGAGCGGAG 909
Query 893 AATATTCCGATGTCGTCGGAGATGATGCTGAGCTGGCGACGGAGGCTTTCGCCGGAGATT 952
||| || || | ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 910 CGGATTTTGAAGT--T-GGAGATGATGCTGAGTTGGCGACGGAGGCTTTCGTCGGAGATT 966
Query 953 GTATGTACGGTGAAGCGGTCGTCGCTTTGTTAAAGTGCAAGAAGAACGCTTTAGAGATGA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GTATGTACGGTGAAGCGGTCGTCGCTTTGTTAAAGTGCAAGAAGAACGCTTTAGAGATGA 1026
Query 1013 ATTCATTTTAA 1023
|||| ||||||
Sbjct 1027 ATTCGTTTTAA 1037
> AT1G78100.1 | Symbols: | F-box family protein | chr1:29387795-29389112
FORWARD LENGTH=1318
Length=1318
Score = 261 bits (141), Expect = 1e-68
Identities = 700/954 (73%), Gaps = 102/954 (11%)
Strand=Plus/Plus
Query 70 ATGGACG-TTTTCGATGGC-CTTCCTGA-CCCGATCATCGTCGACATCTTGAACAAAGTT 126
||||||| |||| ||| || |||| || || | | || ||||||| ||||||| |||
Sbjct 113 ATGGACGCTTTT-GAT-GCGATTCCAGATCCTG-TGGTCATCGACATTTTGAACAGAGTC 169
Query 127 GGTGACGTCAAAACCTTACTTCGTTGCAC-TTCTC-TTTCAAAAAGATTCAGCTCCCTT- 183
|||||||||||||| ||| | || || | ||| | |||| ||| |||||| || | ||
Sbjct 170 GGTGACGTCAAAACGTTAATACGATG-TCGTTC-CGTTTCTAAACGATTCAACT-CGTTA 226
Query 184 GTCC-CTCAGTCTGAGTCACTCATCCTCCGACTCGA-C-CA-CC-CCGA--CTCCG-AT- 234
| || ||||||||||||| ||| | |||| |||||| | | || | || | ||| ||
Sbjct 227 G-CCACTCAGTCTGAGTCGCTCCTTCTCCAACTCGATCAGATCCTCGGAGCCACCGAATC 285
Query 235 T--CACC-AG-TC-A----CC-A--G-TA---TCTTCCAATCCT-TATTCAAGTCCTTTC 277
| | || || || | || | | || |||||| || || | ||||| ||| |||
Sbjct 286 TGACTCCGAGATCGATTCTCCTATCGCTAGCTTCTTCCGAT-CTCTCTTCAAATCCATTC 344
Query 278 ACGGTCT-CTT-CT-CTCTTTTCTCTAAACCGGCTAAAC-C-GATCCCAGTCAC-GGCTC 331
||||||| ||| || || | ||||| ||||| ||| ||| | || | | || | | |
Sbjct 345 ACGGTCTCCTTCCTCCTATCTTCTCCAAACCAGCT-AACTCTGA-CGAAATC-CTAACCC 401
Query 332 TCTCTCCG-ACTCTCC-CCTCCAAGATTCTCTCCCCG-TTTG-ACAAGATCCGGAGTTTG 387
|||||| | |||| || | ||||||||| || | |||| || |||||||| | ||
Sbjct 402 GATCTCCGAAAACTCCGGCT-C-AGATTCTCT-CCGGATTTGAAC-GGATCCGGAATCTG 457
Query 388 GACGTCGAGCTT-CACGGCGGCGATGTAAAGCTTGAAAAAGGCGCCGCCGTTAAGTGGAA 446
|| || || || |||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct 458 GAGGTGGA-ATTATACGGTGGTGATGTCAAGCTTGAGAAAGGCGCCGCCGTTAAGTGGAA 516
Query 447 AGCGGAGTTTGGGAAAACTCTCAAGAGCTGCGTCGTTGTCGCCTTCCGTTCCGC--C-G- 502
|| ||||| |||||||||||||||||||||||| | ||||| ||||||||||| | |
Sbjct 517 GGCTGAGTTCGGGAAAACTCTCAAGAGCTGCGTCATCGTCGCTTTCCGTTCCGCGACGGT 576
Query 503 --CTAC--C-G-TG-T-C---TTCTCCCGTCGCCGTAGAC---G--G-TGAGTCAGACGC 545
||| | | | | | || ||| || ||| ||| | | ||||||||| |
Sbjct 577 TAATACTTCAGCAGCTACGGAAGCTGCCGCCGTCGTCGACGGTGTTGTTGAGTCAGATTC 636
Query 546 CGAGTTTGTGACCGGACTGAAGACACGTGTCGTGTGGACGATAAGCGCGTTGATGGCTGC 605
|||||||| ||| ||||||| || || ||||||||||| |||||||||||||| ||
Sbjct 637 GGAGTTTGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGATGGCGGC 696
Query 606 GTCGTCTCGTCATTACTTGATGAGAGAAGTCGTGAAGGAGCACGTGGAGATGGAGAGTTT 665
|| | |||||||||||||||||||| | ||||| || ||| ||||||||||| ||
Sbjct 697 TTCCACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGAGAAATT 756
Query 666 GATCATGCGTGAC-GTAGAAGGAGAGGGGACGGTGGTGATGGACGCGGAAGGGCTTAAAG 724
||| |||||||| || || || || || ||||||||||||||||||| ||| | ||||
Sbjct 757 GATTGTGCGTGACAGT-GATGGTGAAGGTACGGTGGTGATGGACGCGGCGGGGATGAAAG 815
Query 725 AGTTTAGGA-ATACGGAGGCGCGTGTGG--AA-GACG-A--GGAGCGCGTGGTGAAAAAT 777
| | | || | ||||||| ||||| || || | | | |||||||||| | |
Sbjct 816 AATACA-GAGAGACGGAGGTGCGTGGGGATAATAAAGAATCAGAGCGCGTGG-G--GGA- 870
Query 778 AGCAGGAGTGTTGTCCCGAGCGTGAGGATGAGTATGAGACACGCGCCGTCTCTTAAACTT 837
| | | | ||| || || |||||||||||||||||||||||||||||||| || | ||
Sbjct 871 A-C-GAACTGTGGTACCTAGCGTGAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTG 928
Query 838 AAGAGTGGTATTTGTTTAGAATCTGCCACGCTTGTGATCATCCGTCCGAGTGGAGAATAT 897
||||| || |||||| | ||| | || ||||| ||| || | | |||| ||| | |
Sbjct 929 AAGAGCGGGATTTGTCTCGAAGCAGCGACGCTGGTGGTCGTAAGGCCGACTGGTGTGGCT 988
Query 898 TCCGATGTCGTCGGAGATGATGCTGAGCTGGCGACGGAGGCTTTCGCCGGAGAT 951
||||||| | | | |||| |||||||| ||||||||| ||||||||||||
Sbjct 989 TCCGATGA--T---A-ACGATGTTGAGCTGGTGACGGAGGCGTTCGCCGGAGAT 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5