BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472459
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22230.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1541 0.0
> AT1G22230.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G78110.1); Has 2358 Blast hits to 1759 proteins
in 159 species: Archae - 2; Bacteria - 36; Metazoa - 1046;
Fungi - 203; Plants - 157; Viruses - 72; Other Eukaryotes
- 842 (source: NCBI BLink). | chr1:7849861-7851122 FORWARD
LENGTH=1262
Length=1262
Score = 1541 bits (834), Expect = 0.0
Identities = 1085/1196 (91%), Gaps = 58/1196 (5%)
Strand=Plus/Plus
Query 1 GATGGCAAAGAAAGTATTATTTTCCAGCAAAAGATAAAGCTTGCGAAGCTGTCAAAGCAC 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2 GATGGCAAAGAAAGTATTATTTTCCCGCAAAAGATAAAGCTTGCGAAGCTGTCAAAGCAC 61
Query 61 AAGAATGCtaaaggctt--aaataaacaaattttcaagaaaaagt--------------- 103
||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 62 AAGAATGCTAAAGGCTTAAAAATAAACAAATTCTCAAGAAAAAGTGGAAGAGGAAAGCAA 121
Query 104 atttttaaaccaaaagataaaaagctaaaCCACTCTCTTCAAGATCGATCCTATTATA-T 162
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 122 ATTTTTAAACCAAAAGAGAAAAAGCTAAACCACTCTCTTCAAGATCGATCCTA-TATACA 180
Query 163 ACA-AATCCA-AAGAAGAAGAAGAGAGAATCGGATTGG-------------AAGATGATC 207
||| || | ||||||||||||||||||||| ||||| |||||||||
Sbjct 181 ACACAA--AAGAAGAAGAAGAAGAGAGAATCGAATTGGATAACAACTAAAAAAGATGATC 238
Query 208 AAAGGAGGAGGAGGAAAATCTTCTGGTTACTCAGCAGATTTGATGGTTTGTTTCCCTTCA 267
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 AAAGGAGGAGGAGGAAAGTCTTCTGGTTACTCAGCAGATTTGATGGTTTGTTTCCCATCA 298
Query 268 AGAACACATTTGTCTTTACCTTCTAAATCCATTTCTAGCCCTTC-TCACTCCTTTAACCG 326
||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 299 AGAGCACATTTGTCTTTACCTTCTAAATCCATTTCTAGCCCTTCTTC-TTCCTTTAACCG 357
Query 327 CCGTCAAAATGCTCCTCACCACCGCCGCAGTATCAGTAAGCTCTCTGGAAGCGGTGGTGG 386
|||||||||||||||||||||||| || || ||||||||||||||| | ||||| |||||
Sbjct 358 CCGTCAAAATGCTCCTCACCACCGTCGTAGCATCAGTAAGCTCTCTAGCAGCGGCGGTGG 417
Query 387 AGTTCGTCAGAATCGTGGTGGCGGTAGGGAGGTAGTTGAAGAACCTACGTCGCCAAAAGT 446
||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 418 AGTACGTCAGAATCGCGGTGGCGGAAGGGAGGTAGTTGAAGAACCTACGTCGCCGAAAGT 477
Query 447 CACTTGTGCTGGTCAGATCAAAGTGCGGTCAAGTAAACGCGATGGTGGAAGCAAGAATTG 506
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 CACGTGTGCTGGTCAGATCAAAGTGCGGTCAAGTAAACGCGATGGTGGAGGCAAGAATTG 537
Query 507 GCAGTCTTTAATAGCGGAGATCGAGAAGATACATAGAAGCAAGTCGGAGAGTAAGTTCTT 566
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCAGTCTTTGATGGCGGAGATAGAGAAGATACATAGAAGCAAGTCGGAGAGTAAGTTCTT 597
Query 567 TGGGATTAAGAGAGATGTTATGAGCTTCTTGACTTGCCTCCGCGATTTCGATTTTCGATG 626
|||||||||||||||||| ||| | || ||||||||||||||||| ||||||||||||||
Sbjct 598 TGGGATTAAGAGAGATGTCATGGGATTTTTGACTTGCCTCCGCGACTTCGATTTTCGATG 657
Query 627 TTTCGGTGCGTTTCCTCCGGTGGATATAATCTCTGATGATgaagaagaagaagaggaaga 686
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 658 TTTTGGTGCGTTTCCTCCGGTTGATATAATCTCTGATGATGAAGAAGAAGACGAGGAAGA 717
Query 687 ggaagagga--a-gaagaagaagatgaagatgaaagCTCGGGGACAGTTTTCTCGAAATG 743
||||||||| | ||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 718 GGAAGAGGAGGATGAAGAAGAAGATGAAGATGAAAGTTCAGGGACAGTTTTCTCTAAATG 777
Query 744 GCTTATGGTTTTACACGAAAAGCAAAACAATGGAGAGTGCGTCAACGAAAAGGAAAACGC 803
|||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||
Sbjct 778 GCTTATGGTTTTACACGAAAAGCAAAACAATGAAGAGTGTGTCGACGGAAAGGAAAACGT 837
Query 804 TTTTTCGGATGTAGAAACTGCGGTTCCGCCGCCAAACGCGTTGTTGTTGATGCGGTGCAG 863
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||
Sbjct 838 TTTTTCGGATGTAGAAACTGCGGTCCCGCCGCCGAACGCGTTGTTGCTGATGCGGTGTAG 897
Query 864 ATCTGCCCCGGTTAAGAATTGGTTagaggagaagaaagaagaaacagaggaaggtgaaaa 923
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 898 ATCTGCACCGGTTAAGAATTGGTCAGAGGAGAAGAAAGAAGAAACAGAGGAAGGTGATAA 957
Query 924 cagagtaaaacagagcggagaagaagaagaagaagaagaagaagaagaagagaaggagag 983
|||||||||||||||||||||||||||||||||||| |||| || | ||| || ||
Sbjct 958 CAGAGTAAAACAGAGCGGAGAAGAAGAAGAAGAAGA-GAAG--GAC-A-GAGT-GG-GA- 1009
Query 984 agtgagaaataagaaggatctgagatcattaatggaggaagagaagaaggTGAATTTGGT 1043
| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1010 A---A----TAAGAAGGATCTGAGATCATTAATGGAGGAAGAGAAGAAGATGAATTTGGT 1062
Query 1044 AGTGATGAATTACGACACAAACTATTACAAACTCTCTACA-GATATCGCTAAGGAAACTT 1102
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 1063 AGTGATGAATTACGACACAAACTATTACAAACTCTCTA-ATGATATCGCAAAGGAAACTT 1121
Query 1103 GGGTTGTCGGTGGAATTCAAGATCCTCTGTTTCGTAGTCGAAGCTGGAAGAAGTGA 1158
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GGGTTGTCGGTGGTATTCAAGATCCTCTGTTTCGTAGTCGAAGCTGGAAGAAGTGA 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5