BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472459 Length=1158 Score E Sequences producing significant alignments: (Bits) Value AT1G22230.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1541 0.0 > AT1G22230.1 | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78110.1); Has 2358 Blast hits to 1759 proteins in 159 species: Archae - 2; Bacteria - 36; Metazoa - 1046; Fungi - 203; Plants - 157; Viruses - 72; Other Eukaryotes - 842 (source: NCBI BLink). | chr1:7849861-7851122 FORWARD LENGTH=1262 Length=1262 Score = 1541 bits (834), Expect = 0.0 Identities = 1085/1196 (91%), Gaps = 58/1196 (5%) Strand=Plus/Plus Query 1 GATGGCAAAGAAAGTATTATTTTCCAGCAAAAGATAAAGCTTGCGAAGCTGTCAAAGCAC 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2 GATGGCAAAGAAAGTATTATTTTCCCGCAAAAGATAAAGCTTGCGAAGCTGTCAAAGCAC 61 Query 61 AAGAATGCtaaaggctt--aaataaacaaattttcaagaaaaagt--------------- 103 ||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 62 AAGAATGCTAAAGGCTTAAAAATAAACAAATTCTCAAGAAAAAGTGGAAGAGGAAAGCAA 121 Query 104 atttttaaaccaaaagataaaaagctaaaCCACTCTCTTCAAGATCGATCCTATTATA-T 162 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 122 ATTTTTAAACCAAAAGAGAAAAAGCTAAACCACTCTCTTCAAGATCGATCCTA-TATACA 180 Query 163 ACA-AATCCA-AAGAAGAAGAAGAGAGAATCGGATTGG-------------AAGATGATC 207 ||| || | ||||||||||||||||||||| ||||| ||||||||| Sbjct 181 ACACAA--AAGAAGAAGAAGAAGAGAGAATCGAATTGGATAACAACTAAAAAAGATGATC 238 Query 208 AAAGGAGGAGGAGGAAAATCTTCTGGTTACTCAGCAGATTTGATGGTTTGTTTCCCTTCA 267 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 239 AAAGGAGGAGGAGGAAAGTCTTCTGGTTACTCAGCAGATTTGATGGTTTGTTTCCCATCA 298 Query 268 AGAACACATTTGTCTTTACCTTCTAAATCCATTTCTAGCCCTTC-TCACTCCTTTAACCG 326 ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 299 AGAGCACATTTGTCTTTACCTTCTAAATCCATTTCTAGCCCTTCTTC-TTCCTTTAACCG 357 Query 327 CCGTCAAAATGCTCCTCACCACCGCCGCAGTATCAGTAAGCTCTCTGGAAGCGGTGGTGG 386 |||||||||||||||||||||||| || || ||||||||||||||| | ||||| ||||| Sbjct 358 CCGTCAAAATGCTCCTCACCACCGTCGTAGCATCAGTAAGCTCTCTAGCAGCGGCGGTGG 417 Query 387 AGTTCGTCAGAATCGTGGTGGCGGTAGGGAGGTAGTTGAAGAACCTACGTCGCCAAAAGT 446 ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 418 AGTACGTCAGAATCGCGGTGGCGGAAGGGAGGTAGTTGAAGAACCTACGTCGCCGAAAGT 477 Query 447 CACTTGTGCTGGTCAGATCAAAGTGCGGTCAAGTAAACGCGATGGTGGAAGCAAGAATTG 506 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 478 CACGTGTGCTGGTCAGATCAAAGTGCGGTCAAGTAAACGCGATGGTGGAGGCAAGAATTG 537 Query 507 GCAGTCTTTAATAGCGGAGATCGAGAAGATACATAGAAGCAAGTCGGAGAGTAAGTTCTT 566 ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 538 GCAGTCTTTGATGGCGGAGATAGAGAAGATACATAGAAGCAAGTCGGAGAGTAAGTTCTT 597 Query 567 TGGGATTAAGAGAGATGTTATGAGCTTCTTGACTTGCCTCCGCGATTTCGATTTTCGATG 626 |||||||||||||||||| ||| | || ||||||||||||||||| |||||||||||||| Sbjct 598 TGGGATTAAGAGAGATGTCATGGGATTTTTGACTTGCCTCCGCGACTTCGATTTTCGATG 657 Query 627 TTTCGGTGCGTTTCCTCCGGTGGATATAATCTCTGATGATgaagaagaagaagaggaaga 686 ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 658 TTTTGGTGCGTTTCCTCCGGTTGATATAATCTCTGATGATGAAGAAGAAGACGAGGAAGA 717 Query 687 ggaagagga--a-gaagaagaagatgaagatgaaagCTCGGGGACAGTTTTCTCGAAATG 743 ||||||||| | ||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 718 GGAAGAGGAGGATGAAGAAGAAGATGAAGATGAAAGTTCAGGGACAGTTTTCTCTAAATG 777 Query 744 GCTTATGGTTTTACACGAAAAGCAAAACAATGGAGAGTGCGTCAACGAAAAGGAAAACGC 803 |||||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||| Sbjct 778 GCTTATGGTTTTACACGAAAAGCAAAACAATGAAGAGTGTGTCGACGGAAAGGAAAACGT 837 Query 804 TTTTTCGGATGTAGAAACTGCGGTTCCGCCGCCAAACGCGTTGTTGTTGATGCGGTGCAG 863 |||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| || Sbjct 838 TTTTTCGGATGTAGAAACTGCGGTCCCGCCGCCGAACGCGTTGTTGCTGATGCGGTGTAG 897 Query 864 ATCTGCCCCGGTTAAGAATTGGTTagaggagaagaaagaagaaacagaggaaggtgaaaa 923 |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 898 ATCTGCACCGGTTAAGAATTGGTCAGAGGAGAAGAAAGAAGAAACAGAGGAAGGTGATAA 957 Query 924 cagagtaaaacagagcggagaagaagaagaagaagaagaagaagaagaagagaaggagag 983 |||||||||||||||||||||||||||||||||||| |||| || | ||| || || Sbjct 958 CAGAGTAAAACAGAGCGGAGAAGAAGAAGAAGAAGA-GAAG--GAC-A-GAGT-GG-GA- 1009 Query 984 agtgagaaataagaaggatctgagatcattaatggaggaagagaagaaggTGAATTTGGT 1043 | | |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1010 A---A----TAAGAAGGATCTGAGATCATTAATGGAGGAAGAGAAGAAGATGAATTTGGT 1062 Query 1044 AGTGATGAATTACGACACAAACTATTACAAACTCTCTACA-GATATCGCTAAGGAAACTT 1102 |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| Sbjct 1063 AGTGATGAATTACGACACAAACTATTACAAACTCTCTA-ATGATATCGCAAAGGAAACTT 1121 Query 1103 GGGTTGTCGGTGGAATTCAAGATCCTCTGTTTCGTAGTCGAAGCTGGAAGAAGTGA 1158 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 GGGTTGTCGGTGGTATTCAAGATCCTCTGTTTCGTAGTCGAAGCTGGAAGAAGTGA 1177 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56827016940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5