BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472463
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22270.1 | Symbols: | Trm112p-like protein | chr1:7865481-7... 813 0.0
> AT1G22270.1 | Symbols: | Trm112p-like protein | chr1:7865481-7866139
FORWARD LENGTH=659
Length=659
Score = 813 bits (440), Expect = 0.0
Identities = 559/613 (91%), Gaps = 21/613 (3%)
Strand=Plus/Plus
Query 1 TAGGGTTAAGCCAGAGAGAAACTAGAGATGAGGTTGATAACGCACAACATGCTTTCCTGC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 TAGGGTTAAGCAAGAGAGAAACTAGAGATGAGGTTGATAACGCACAACATGCTTTCCTGC 100
Query 61 AACATCAAAGGAGTCACCAATGGATTTCCTCTACGGATCGAAGCTGGGAACGTGATTGAG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 101 AACATCAAAGGAGTCACCAGTGGATTTCCTCTACGGATCGAAGCTGGGAACGTGATTGAG 160
Query 121 AAGGAAGTCGATTTCAATCCCGATTTTATCAGGCACATGTTCGCGAAGATTGAGTGGAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AAGGAAGTCGATTTCAATCCCGATTTTATCAGGCACATGTTCGCGAAGATTGAGTGGAAA 220
Query 181 GCTCTTGTGGAAGGTGCGCGTTCCATGGGATACGCTGAGTTACCGGAGGATTCTCCAGAC 240
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 221 GCTCTGGTGGAAGGTGCGCGTTCCATGGGATACGCTGAGTTACCGGAGGAATCTCCGGAC 280
Query 241 GCGGCGGTGCTGAAATCAGATGAGCCCTTCCTTAAGAAACTTCACCACGCGTTGCTCGAG 300
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 281 GCCGCGGTGCTGAAATCAGATGAGCCCTTCCTTAAGAAACTCCACCACGCGTTGCTCGAG 340
Query 301 CTCCACCTCGAAGAAGGCGCGCTTGTTTGCCCTGAGACTGGACGGAAGTTTCCGGTTAAC 360
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CTCCACCTTGAGGAAGGCGCGCTTGTTTGCCCTGAGACTGGACGGAAGTTTCCGGTTAAT 400
Query 361 AAAGGAATCCCAAATATGCTTCTTCATGAAGACGAGGTTTAATTGATTGGGAAAATTTTA 420
||||||||||||||||||||||| ||||||||||||||||||||||||| || | ||||
Sbjct 401 AAAGGAATCCCAAATATGCTTCTCCATGAAGACGAGGTTTAATTGATTGTGAGATTTTTC 460
Query 421 CTTGTACGTTTTCGTT-TATGATGTTTCTGGTGATGTGAACCTTT-AGTGAG-TATGCAA 477
|||||| |||| | | ||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 461 CTTGTAAGTTT-CAATCTATGATGTTTCTGATGATGTGAACCTTTTAGTGAGATATGCAA 519
Query 478 TTGAATCATCCC-TTT---TC-------GT---CGTTTTGGATCCTTTAATCGTATTGGT 523
|||||| || || ||| || || ||||||| |||||||||| || || |
Sbjct 520 TTGAATGATTCCATTTGAATCATCCATTGTTGTCGTTTTGAATCCTTTAATTGTGTTT-T 578
Query 524 AGGAA-GAATGGTGCCTGATTGCTTCAAA-TTTATACCCTGATTTTGAGTATTGTTTCAA 581
| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 579 ATCAAAGAATGGTGCCTGATTGCAAAAAAGTTTATACCCTGATTTTGAGTATTGTTTCAA 638
Query 582 CTAAATGGTCACT 594
|| ||||||||
Sbjct 639 GTAGTTGGTCACT 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5