BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472467
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22280.3 | Symbols: PAPP2C | phytochrome-associated protein ... 1701 0.0
> AT1G22280.3 | Symbols: PAPP2C | phytochrome-associated protein
phosphatase type 2C | chr1:7873867-7875831 FORWARD LENGTH=1486
Length=1486
Score = 1701 bits (921), Expect = 0.0
Identities = 1269/1420 (89%), Gaps = 92/1420 (6%)
Strand=Plus/Plus
Query 2 TTCGCGGAGGAAAAAGACATAAACGAAAAGAGAGCGAAGACTTTCGTCGCAGAGACTTTG 61
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 78 TTCGCGTAGGAAAAAGACATAAACGAAAAGAGAGCGAAGAC-TTCGTCGCATAGACTTTG 136
Query 62 TGGATTTATCGTT--GAGTACCT----C--aaaaaaaTTG-AAACCAAATTAGGGTTTTT 112
| ||||||||||| |||||||| | |||||||||| |||||||||||||||||||
Sbjct 137 TAGATTTATCGTTGAGAGTACCTCAAACAAAAAAAAATTGAAAACCAAATTAGGGTTTTT 196
Query 113 ATTTTGCAGATTGTTTTGTTTATTTGAATAAATCTGCGCAAGTTTGAATTAGGTTGCAAA 172
| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 197 AATTTCCAGATTGTTTTGTTTATTTGAATAAATCTCCGCAAGTTTCAATTAGGTTGCAAA 256
Query 173 AATCGAAGAAAATATCTTCGATTC-aaaaaaaTGGGAAAATTTTGTTGCTTCACTTCCGC 231
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 257 AATCGAAGAAATTTTCTTCGATTCAAAAAAAATGGGAAAATTTTGTTGCTTCACTTCCGC 316
Query 232 TTCTGAGGTTGTGGGAGGACAATCATCATCTCGATCAGGTAAAGGAAGAAGTGATGAAGG 291
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 317 TTCTGAGGTTGTGGGAGGACAATCATCATCACGATCAGGTAAAGGAAGAAGTGATGAAGG 376
Query 292 GATGATCAAGTATGGCTTTAGTCTAGTGAAAGGGAAAGCTAATCATCCCATGGAAGATTA 351
||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 377 GATGATCAAGTATGGTTTTAGTCTAGTGAAAGGAAAAGCTAACCATCCAATGGAAGATTA 436
Query 352 TCATGTTGCTAACTTTATCAACATTCAAGACCATGAATTGGGGCTTTTTGCTATTTATGA 411
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 437 TCATGTTGCTAACTTTATCAACATCCAAGACCATGAATTGGGTCTTTTTGCTATTTATGA 496
Query 412 TGGTCATATGGGTGATAGTGTCCCTGCTTACTTGCAGAAACGCCTCTTCTCCAATATCCT 471
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 497 TGGTCATATGGGTGATAGTGTCCCTGCTTACTTGCAGAAACGTCTCTTCTCCAATATCCT 556
Query 472 T-A--AGG---------------AGGGAGAGTTCTGGGTTGATCCTCGAAGGTCTATTGC 513
| | ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 557 TAAGGAGGTAAAAACAAAAAAAAAGGGAGAGTTTTGGGTTGATCCTCGAAGGTCTATTGC 616
Query 514 AAAAGCTTATGAGAAGACGGACCAGGCGATTCTATCAAATAGTTCTGACTTGGGTCGTGG 573
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 617 AAAAGCTTATGAGAAGACGGACCAAGCGATTCTATCGAATAGTTCTGACTTGGGTCGTGG 676
Query 574 CGGGTCTACAGCTGTGACTGCTATATTGATTAATGGGAGAAAGTTGTGGATAGCCAATGT 633
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 677 TGGTTCTACTGCTGTGACTGCTATATTGATTAATGGGAGAAAGTTGTGGATAGCTAATGT 736
Query 634 TGGGGATTCACGAGCAGTTCTTTCTCAAGGTGGCACAATAACGCAGATGAGTACAGATCA 693
||| ||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 737 TGGTGATTCACGAGCTGTTCTTTCTCATGGTGGCGCTATAACGCAGATGAGTACAGATCA 796
Query 694 TGAGCCTCGTACTGAAAGGTCGAGCATTGAAGATAGAGGTGGATTTGTATCCAATCTACC 753
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 797 TGAGCCTCGTACTGAAAGGTCGAGTATTGAAGATAGAGGTGGATTTGTATCCAATCTACC 856
Query 754 AGGTGATGTTCCTCGGGTGAATGGTCAATTAGCTGTGAGTCGTGCTTTTGGAGATAAGGG 813
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 857 AGGTGATGTTCCTCGGGTGAATGGTCAATTAGCTGTGTCTCGTGCTTTTGGAGATAAGGG 916
Query 814 ACTTAAGACACACCTGAGTTCAGAACCTGACATAAAAGAAGCTATTGTAGATAGCCAGAC 873
||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 917 ACTTAAGACACACTTGAGTTCAGAGCCTGACATAAAAGAAGCTACTGTAGATAGCCAGAC 976
Query 874 AGATGTTCTTCTTTTGGCCAGTGATGGCATTTGGAAGGTAATGACAAATGAAGAGGCAAT 933
|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 977 AGATGTTCTTCTCTTGGCTAGTGATGGCATCTGGAAGGTGATGACAAATGAAGAGGCAAT 1036
Query 934 GGAGATAGCTAGAAAAGTGAAAGATCCACAGAAAGCAGCAAAGGAATTAACAGCTGAAGC 993
||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1037 GGAGATAGCGAGAAGAGTGAAAGATCCACAGAAAGCGGCAAAGGAATTAACAGCTGAAGC 1096
Query 994 ATTGAGAAGAGAGAGTAAAGACGACATATCTTGTGTCGTAGTCCGATTCAGATGACAAAC 1053
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1097 ATTGAGAAGAGAGAGTAAAGACGACATATCTTGTGTCGTGGTCCGATTCAGATGACAAAC 1156
Query 1054 TCT--GAAGGGGGATGGATCATTTACGAGGAGATAA-TA----A-ACCAGCATTTTCAAT 1105
||| ||| || || | | || ||| |||||| | | | | |||| ||||
Sbjct 1157 TCTCTGAAAGG--AT--A-C-TT-ACGGGGAGATGGGTTCCTTATATAATAATTT-CAAT 1208
Query 1106 CAAAGATTCATCAGGACAAAAAAGCTTGTTTTTCACAGGATTCGACTCAGATGATTCTGG 1165
|||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct 1209 CAAAGATTCATCAGGACAAAAAAGCTTGTTTT-CACTGGATTCGACTCTGATGATTCTGG 1267
Query 1166 T-C---------C-GGTC---G----A-TTTGTGAT-AGCCGCTTCTTGCTATAGCTTAT 1205
| | | |||| | | |||||||| ||| |||||||||||||||||||
Sbjct 1268 TTCGGTTTAGGACCGGTCTAAGTTTCAATTTGTGATTAGCTGCTTCTTGCTATAGCTTAT 1327
Query 1206 GTGCGTTCGTTGTGTAAATTGTGTGTTTTAAAAGACGACAAGAATATGAACAAAAAAGG- 1264
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1328 GTGCGTTCGTTGTGTAAATTGTGTGTTTTAAA-GACGATAAGAAAATGAACAAAAAAGGA 1386
Query 1265 -TG---A-TGG-G----G-GAT---T--TG-----T---GTTATTATAATTGGTTGATTT 1300
|| | ||| | | | | | || | |||||||||||||||||||||
Sbjct 1387 GTGGGGAATGGAGTTTTGTGGTGGGTGATGGGGGGTTTTGTTATTATAATTGGTTGATTT 1446
Query 1301 GTTATATTTAATCATCGAGATATAAATATTAGGATGTTTT 1340
||||||||||||||||| ||||||||||||||||||||||
Sbjct 1447 GTTATATTTAATCATCGGGATATAAATATTAGGATGTTTT 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5