BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472467 Length=1383 Score E Sequences producing significant alignments: (Bits) Value AT1G22280.3 | Symbols: PAPP2C | phytochrome-associated protein ... 1701 0.0 > AT1G22280.3 | Symbols: PAPP2C | phytochrome-associated protein phosphatase type 2C | chr1:7873867-7875831 FORWARD LENGTH=1486 Length=1486 Score = 1701 bits (921), Expect = 0.0 Identities = 1269/1420 (89%), Gaps = 92/1420 (6%) Strand=Plus/Plus Query 2 TTCGCGGAGGAAAAAGACATAAACGAAAAGAGAGCGAAGACTTTCGTCGCAGAGACTTTG 61 |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 78 TTCGCGTAGGAAAAAGACATAAACGAAAAGAGAGCGAAGAC-TTCGTCGCATAGACTTTG 136 Query 62 TGGATTTATCGTT--GAGTACCT----C--aaaaaaaTTG-AAACCAAATTAGGGTTTTT 112 | ||||||||||| |||||||| | |||||||||| ||||||||||||||||||| Sbjct 137 TAGATTTATCGTTGAGAGTACCTCAAACAAAAAAAAATTGAAAACCAAATTAGGGTTTTT 196 Query 113 ATTTTGCAGATTGTTTTGTTTATTTGAATAAATCTGCGCAAGTTTGAATTAGGTTGCAAA 172 | ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 197 AATTTCCAGATTGTTTTGTTTATTTGAATAAATCTCCGCAAGTTTCAATTAGGTTGCAAA 256 Query 173 AATCGAAGAAAATATCTTCGATTC-aaaaaaaTGGGAAAATTTTGTTGCTTCACTTCCGC 231 ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 257 AATCGAAGAAATTTTCTTCGATTCAAAAAAAATGGGAAAATTTTGTTGCTTCACTTCCGC 316 Query 232 TTCTGAGGTTGTGGGAGGACAATCATCATCTCGATCAGGTAAAGGAAGAAGTGATGAAGG 291 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 317 TTCTGAGGTTGTGGGAGGACAATCATCATCACGATCAGGTAAAGGAAGAAGTGATGAAGG 376 Query 292 GATGATCAAGTATGGCTTTAGTCTAGTGAAAGGGAAAGCTAATCATCCCATGGAAGATTA 351 ||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 377 GATGATCAAGTATGGTTTTAGTCTAGTGAAAGGAAAAGCTAACCATCCAATGGAAGATTA 436 Query 352 TCATGTTGCTAACTTTATCAACATTCAAGACCATGAATTGGGGCTTTTTGCTATTTATGA 411 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 437 TCATGTTGCTAACTTTATCAACATCCAAGACCATGAATTGGGTCTTTTTGCTATTTATGA 496 Query 412 TGGTCATATGGGTGATAGTGTCCCTGCTTACTTGCAGAAACGCCTCTTCTCCAATATCCT 471 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 497 TGGTCATATGGGTGATAGTGTCCCTGCTTACTTGCAGAAACGTCTCTTCTCCAATATCCT 556 Query 472 T-A--AGG---------------AGGGAGAGTTCTGGGTTGATCCTCGAAGGTCTATTGC 513 | | ||| |||||||||| |||||||||||||||||||||||||| Sbjct 557 TAAGGAGGTAAAAACAAAAAAAAAGGGAGAGTTTTGGGTTGATCCTCGAAGGTCTATTGC 616 Query 514 AAAAGCTTATGAGAAGACGGACCAGGCGATTCTATCAAATAGTTCTGACTTGGGTCGTGG 573 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 617 AAAAGCTTATGAGAAGACGGACCAAGCGATTCTATCGAATAGTTCTGACTTGGGTCGTGG 676 Query 574 CGGGTCTACAGCTGTGACTGCTATATTGATTAATGGGAGAAAGTTGTGGATAGCCAATGT 633 || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 677 TGGTTCTACTGCTGTGACTGCTATATTGATTAATGGGAGAAAGTTGTGGATAGCTAATGT 736 Query 634 TGGGGATTCACGAGCAGTTCTTTCTCAAGGTGGCACAATAACGCAGATGAGTACAGATCA 693 ||| ||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||| Sbjct 737 TGGTGATTCACGAGCTGTTCTTTCTCATGGTGGCGCTATAACGCAGATGAGTACAGATCA 796 Query 694 TGAGCCTCGTACTGAAAGGTCGAGCATTGAAGATAGAGGTGGATTTGTATCCAATCTACC 753 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 797 TGAGCCTCGTACTGAAAGGTCGAGTATTGAAGATAGAGGTGGATTTGTATCCAATCTACC 856 Query 754 AGGTGATGTTCCTCGGGTGAATGGTCAATTAGCTGTGAGTCGTGCTTTTGGAGATAAGGG 813 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 857 AGGTGATGTTCCTCGGGTGAATGGTCAATTAGCTGTGTCTCGTGCTTTTGGAGATAAGGG 916 Query 814 ACTTAAGACACACCTGAGTTCAGAACCTGACATAAAAGAAGCTATTGTAGATAGCCAGAC 873 ||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 917 ACTTAAGACACACTTGAGTTCAGAGCCTGACATAAAAGAAGCTACTGTAGATAGCCAGAC 976 Query 874 AGATGTTCTTCTTTTGGCCAGTGATGGCATTTGGAAGGTAATGACAAATGAAGAGGCAAT 933 |||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| Sbjct 977 AGATGTTCTTCTCTTGGCTAGTGATGGCATCTGGAAGGTGATGACAAATGAAGAGGCAAT 1036 Query 934 GGAGATAGCTAGAAAAGTGAAAGATCCACAGAAAGCAGCAAAGGAATTAACAGCTGAAGC 993 ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1037 GGAGATAGCGAGAAGAGTGAAAGATCCACAGAAAGCGGCAAAGGAATTAACAGCTGAAGC 1096 Query 994 ATTGAGAAGAGAGAGTAAAGACGACATATCTTGTGTCGTAGTCCGATTCAGATGACAAAC 1053 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1097 ATTGAGAAGAGAGAGTAAAGACGACATATCTTGTGTCGTGGTCCGATTCAGATGACAAAC 1156 Query 1054 TCT--GAAGGGGGATGGATCATTTACGAGGAGATAA-TA----A-ACCAGCATTTTCAAT 1105 ||| ||| || || | | || ||| |||||| | | | | |||| |||| Sbjct 1157 TCTCTGAAAGG--AT--A-C-TT-ACGGGGAGATGGGTTCCTTATATAATAATTT-CAAT 1208 Query 1106 CAAAGATTCATCAGGACAAAAAAGCTTGTTTTTCACAGGATTCGACTCAGATGATTCTGG 1165 |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| Sbjct 1209 CAAAGATTCATCAGGACAAAAAAGCTTGTTTT-CACTGGATTCGACTCTGATGATTCTGG 1267 Query 1166 T-C---------C-GGTC---G----A-TTTGTGAT-AGCCGCTTCTTGCTATAGCTTAT 1205 | | | |||| | | |||||||| ||| ||||||||||||||||||| Sbjct 1268 TTCGGTTTAGGACCGGTCTAAGTTTCAATTTGTGATTAGCTGCTTCTTGCTATAGCTTAT 1327 Query 1206 GTGCGTTCGTTGTGTAAATTGTGTGTTTTAAAAGACGACAAGAATATGAACAAAAAAGG- 1264 |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 1328 GTGCGTTCGTTGTGTAAATTGTGTGTTTTAAA-GACGATAAGAAAATGAACAAAAAAGGA 1386 Query 1265 -TG---A-TGG-G----G-GAT---T--TG-----T---GTTATTATAATTGGTTGATTT 1300 || | ||| | | | | | || | ||||||||||||||||||||| Sbjct 1387 GTGGGGAATGGAGTTTTGTGGTGGGTGATGGGGGGTTTTGTTATTATAATTGGTTGATTT 1446 Query 1301 GTTATATTTAATCATCGAGATATAAATATTAGGATGTTTT 1340 ||||||||||||||||| |||||||||||||||||||||| Sbjct 1447 GTTATATTTAATCATCGGGATATAAATATTAGGATGTTTT 1486 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68122139565 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5