BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472471
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22310.2 | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain... 2281 0.0
> AT1G22310.2 | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain
8 | chr1:7881537-7883742 REVERSE LENGTH=1850
Length=1850
Score = 2281 bits (1235), Expect = 0.0
Identities = 1664/1855 (90%), Gaps = 93/1855 (5%)
Strand=Plus/Plus
Query 1 GAAGTTATCGGAATTTGCATCTTTTTGATTCCGCCG-TTTGCGTCTGACGTGTTCACGGC 59
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 29 GAAGTTATCGGAATTTGCATCTTTTTGATTCCGCCGTTTTGCGTCTGACGTGTTCACGGC 88
Query 60 GGCAACCTCCATGGACAACGGTGACCTCGGAAACAACCACCACAACTTCCACGATGGTGC 119
|||||||||||||||| ||||||||||||| ||||||||||| ||||||| || ||| ||
Sbjct 89 GGCAACCTCCATGGACGACGGTGACCTCGGTAACAACCACCATAACTTCCTCGGTGGAGC 148
Query 120 TGATAACCGTTTATCAGCCGAATCTTTGCCGTTAATCGATATGCGTCTCTTATCCCAGTC 179
|| ||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 149 TGGTAATCGTTTATCAGCCGAATCTTTGCCGTTAATCGATACGCGTCTTTTGTCCCAGTC 208
Query 180 AGAACTTCGCGctctctctcactgttcttctctatctccatcttcttcagcgtctctcGC 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 209 AGAACTTCGCGCTCTCTCTCAGTGTTCTTCTCTATCTCCATCTTCTTCAGCGTCTCTCGC 268
Query 240 TACTTCCGCCGGTGGAGACGACGATTTGACACCAAAGATCGATCGCTCCGTCTTCAATGA 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 269 CGCTTCCGCCGGTGGAGACGACGATTTGACACCAAAGATCGATCGCTCCGTTTTCAATGA 328
Query 300 GTCCGCTGGGAGCCGGAAACAGACATTTCTCCGTCTCCGCCTTGCGCGTCACCCTCAACC 359
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 329 GTCCGCTGGTAGCCGGAAACAGACATTTCTCCGTCTCCGCCTTGCGCGCCACCCTCAACC 388
Query 360 AACGGAGAAACCTCCTTCGCCGCAACGTCAAAGAGACGATTCTTCCCTTGAAGAACAAAC 419
| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 389 ACCGGAGGAACCTCCTTCGCCGCAACGTCAGAGAGACGATTCTTCCCGTGAAGAACAAAC 448
Query 420 GCAAGTCGCGTCGCTTCTCAGATCTCTGTTCAATGTCGATTCGATTCAGAGTAAAGAGGA 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 449 GCAAGTCGCGTCGCTTCTCAGATCTCTGTTCAATGTCGATTCGAATCAGAGTAAAGAGGA 508
Query 480 AGAAGACGAAGGAGAGGAAGAAG-TCGAGGAAAACGAAGGTCAGATCCATTATAACAGCT 538
|||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||
Sbjct 509 AGAAGACGAAGGAGAGGAAG-AGCTCGAAGATAACGAAGGTCAGATCCATTATAACAGCT 567
Query 539 ATGTTTATCAGAGACCGAATCTTGATTCGGTTCAGAACGTTCTGATTCAGGGAACCTCCG 598
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 568 ATGTTTATCAGAGACCTAATCTTGATTCGATTCAGAACGTTCTGATTCAGGGAACCTCCG 627
Query 599 GGAATGAAATCAAGAGGAAGCGAGGACGGCCGAGGAAGATTCGGAACCCTAGCGAGGAAG 658
||||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 628 GGAATAAAATAAAGAGGAAGCGTGGACGGCCGAGGAAGATTCGGAACCCTAGC---GAAG 684
Query 659 AGACGGAGGTTTTGGATTTAACAGGTGAAGCATCTACGTATGTGTTTGTAGATAAAACTA 718
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 685 AGAATGAGGTTTTGGATTTAACTGGTGAAGCATCTACGTATGTGTTTGTAGATAAAACTA 744
Query 719 GTAGCAATTTGGGAATAGAGAGTAGATTTGGTAGTTCAGGAATCTCCATGGATTCAAATT 778
|||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 745 GTAGCAATTTGGGAATGGTGAGTAGAGTTGGTAGTTCAGGAATCTCCCTGGATTCAAATT 804
Query 779 CTGTGAAGAGAAAGAGAGGTCGTCCTCCAAAGAATAAGGAAGAGATAATGAACTTGGAGA 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 805 CAGTGAAGAGAAAGAGAGGTCGTCCTCCAAAGAATAAGGAAGAGATAATGAACCTAGAGA 864
Query 839 ACAGAGACAGTGCAATTGGGAAT-TCTTCTGCATTGGATAAGGAAGAG-T--TAGTGAAA 894
| |||||||||||||||| |||| | |||||| || |||||||||||| | |||||||
Sbjct 865 AGAGAGACAGTGCAATTGTGAATAT-TTCTGCGTTTGATAAGGAAGAGTTAGTAGTGAAC 923
Query 895 TTGGAGAACAGAGAAGGTGCAATTGTGGATCTTTCTGCATTGGCTAGTGTTTCAGAGGAT 954
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 924 TTGGAGAACAGAGAAGGTACAATTGTGGATCTCTCTGCATTGGCTAGTGTTTCAGAGGAT 983
Query 955 CCATATGAAGAGGATCTGAGGAGGATCACTGTTGGGTTGAAGACAAAGGAAGAGATCTTA 1014
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 984 CCATACGAAGAGGAGCTGAGGAGGATCACCGTTGGGTTGAAGACAAAGGAAGAGATCTTA 1043
Query 1015 GTTTTCTTGGAACAACTT-AATGGTGAATGGGTGAATATAGGGAAGAAGAAGAAAGTTGT 1073
| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GGTTTCTTGGAACAA-TTGAATGGTGAATGGGTGAATATAGGGAAGAAGAAGAAAGTTGT 1102
Query 1074 GAGA-GCTTGTGATTATGGAGGATACTTGCCCAGAGGATGGAAACTTATGCTCTACATAA 1132
|| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 1103 GA-ATGCTTGTGATTATGGAGGATACTTGCCTAGAGGATGGAGACTTATGCTCTACATCA 1161
Query 1133 AAAAGAAAGGTAGCAATTTGTTGCTGGCTTGTCGCAGATACATAAGCCCTGATGGGCAAC 1192
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AAAGGAAAGGTAGCAATTTGTTGCTGGCTTGTCGCAGATACATAAGCCCTGATGGGCAAC 1221
Query 1193 AGTTTGAAACCTGCAACGAAGTCTCCACATATCTGCGATCTA-TCCTTGAGTCCCCGAGC 1251
|||||||||||||||| ||||||||||||||||| ||||| | | ||||| ||||| |||
Sbjct 1222 AGTTTGAAACCTGCAAGGAAGTCTCCACATATCTACGATC-ACTTCTTGAATCCCCAAGC 1280
Query 1252 AAGAACCGACACTATTACTTGCAATCTGATAACAAGACTCTAGGACAACAGCCAGTAACA 1311
||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| | |
Sbjct 1281 AAGAACCAACATTATTACTTGCAATCTGACAACAAGACTCTAGGACAACAACCAGTGATA 1340
Query 1312 GCTAACGATTCTTCACTAGGTAACTCTAATTCCATGGACTTGCCTGTTCCGGACTCTGAA 1371
|||||||| |||| ||||||||||||| |||||||||||| | || | || ||
Sbjct 1341 GCTAACGAATCTTTACTAGGTAACTCTGATTCCATGGACT--C-TGA---G-AC----AA 1389
Query 1372 AAAATGCAGTACCTTGAGAGTGGAAGAACCGGCAGTGAGGTGTTTGAGGAAGCGAA---- 1427
|||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1390 ----TGCAGTACCTTGAGAGTGGAAGAACCAGCAGTGAGGTGTTTGAGGAAGCAAAAGCC 1445
Query 1428 -T-G-G--TG--A-TGAAGCAGATGGAGTGAAAACCAGTCTGGTGGAGAAAGATGATAAT 1479
| | | || | |||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1446 GTAGAGAATGGCAATGAAGCAGATCGAGTGAAAACCAGTCTGATGCAGAAAGATGATAAT 1505
Query 1480 GCTGATTTTCTGAATGGAG---ACGACCACGACCAT-AC--GAAGAAAAGAGATGGTAAC 1533
|| |||||||||||||||| | ||| ||||| || | |||||||||||||||||||
Sbjct 1506 GCAGATTTTCTGAATGGAGTTGAGGACAACGACGATGATATGAAGAAAAGAGATGGTAAC 1565
Query 1534 ATGGAGAATTTGGC-AGCTCTATCGAA---AGCCATGTCGA------T---G-C--CGAC 1577
|||||||||||||| | |||||||||| || ||| ||| | | | ||||
Sbjct 1566 ATGGAGAATTTGGCGA-CTCTATCGAATTCAGAAATGACGAAAAGCCTACCGACAACGAC 1624
Query 1578 TGATGAGCTTCAACAGTATTTCAACTCACAAATCCACTGAGTTCAGTGACCAGTTCCTTT 1637
| ||||||||||||||||||||| |||||||||| || |||||||||||||| ||| |||
Sbjct 1625 TAATGAGCTTCAACAGTATTTCAGCTCACAAATCAACCGAGTTCAGTGACCATTTCTTTT 1684
Query 1638 ACCTGGAACAAAATGTTTTCTCATTCTAGTTCAGATTTTATGTTTCATGCA---TA---G 1691
|||||||||||| |||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 1685 ACCTGGAACAAATTGTTTTCTCATTCTAGTTCAGATTTTATATTTTATGCAAACTAAAAG 1744
Query 1692 C-TA----A-CTA-C-AC-G-ATATAGAATTTGAAAAGGTCCATGTACAAAACAATT-AG 1740
| | | ||| | || | ||||||||||||||| || |||||||||||||| || |
Sbjct 1745 CGTGTTGTAGCTAACTACAGGATATAGAATTTGAAAGGG-CCATGTACAAAACATTTGA- 1802
Query 1741 CAGAAACCAAtttttttCTTAAAGATAAGAAGAAAAAATTCATTGAGTTTCAATC 1795
|||||||||| ||||||||| || | | ||| || ||| |||||||||||||
Sbjct 1803 CAGAAACCAAATTTTTTCTTCAA-A-A-GAA-AAT---TTCTTTGAGTTTCAATC 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5