BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472481
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22410.1 | Symbols: | Class-II DAHP synthetase family prote... 3033 0.0
> AT1G22410.1 | Symbols: | Class-II DAHP synthetase family protein
| chr1:7912046-7915003 FORWARD LENGTH=1919
Length=1919
Score = 3033 bits (1642), Expect = 0.0
Identities = 1793/1866 (96%), Gaps = 9/1866 (0%)
Strand=Plus/Plus
Query 1 CACACACATTTGTCGAAATCTCAACACCAAACCCAAATTa-aaaaaaCAAAAC--ttt-t 56
||||||||||||||||||||| |||||||| ||||||| | ||||| |||||| ||| |
Sbjct 1 CACACACATTTGTCGAAATCTTAACACCAATCCCAAATCAGAAAAATCAAAACTTTTTAT 60
Query 57 ttt-ttttATAAAAATGGCGCTTATGAATGGAACCATGAATCTATCATCGGTCAAATCAT 115
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTTATTTTATCAAAATGGCGCTTATGAATGGAAGCATGAATCTATCATCGGTCAAATCAT 120
Query 116 CGATGATCAACCACCGTCAACCAAACTTCTCCTCCGCCGTCGCAAGACCCACTTCTTTCC 175
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 121 CGATGATCAACCACCGTCAACCAAACTTCTCCTCCGCCGTCTCCAGACCCACTTCTTTCC 180
Query 176 GGATCTCCGCCGTTCAAACCGACCCCAAAACGCCAGCTGCTTCATcggcggcggcggcgg 235
||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 181 GGATCTCCGCCGTGCAAACCGACCCAAAAACACCAGCTGCTTCATCGGCGTCGGCGGCGA 240
Query 236 cgACGACTCCGGCAGCGTTGACGAAGACCGTTGGAGTTAATGTGGGTAAAGGAAAATGGG 295
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CGACGACTCCGGCAACGTTGACGAAGCCCGTTGGAGTTAATGTGGGTAAAGGAAAATGGG 300
Query 296 CACCAGAGAGTTGGAGGACGAAGAAAGCGTTACAACAACCGGAATATCCAGATTTAGCTG 355
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 301 CACCAGAGAGTTGGAGGACGAAGAAAGCTTTACAGCAACCGGACTATCCAGATTTAGCTG 360
Query 356 AGCTTGAAGCTGTGCTCGAGACCATCGAAGCTTTTCCTCCGATCGTGTTCGCCGGAGAAG 415
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CGCTTGAAGCTGTGCTAGAGACGATCGAAGCTTTTCCTCCGATCGTGTTCGCCGGAGAAG 420
Query 416 CTAGATTGCTTGAGGAGCGTTTAGGACAAGCAGCGATGGGTGAAGCGTTTCTGTTACAAG 475
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTAGATTGCTTGAGGAACGATTAGGACAAGCAGCGATGGGTGAAGCGTTTCTGTTACAAG 480
Query 476 GAGGAGATTGTGCAGAGAGTTTCAAAGAGTTTAATGCGAATAACATTCGTGATACTTTCA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGGAGATTGTGCAGAGAGTTTCAAAGAGTTTAATGCGAATAACATTCGTGATACTTTCA 540
Query 536 GGATTCTTCTTCAGATGGGTGCTGTTTTGATGTTCGGAGGTCAAGTCCCTGTTGTTAAGG 595
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 GGATTCTTCTTCAGATGGGTGCTGTGTTGATGTTCGGAGGTCAAGTCCCTGTTGTTAAGG 600
Query 596 TTGGGAGAATGGCGGGTCAATTTGCTAAACCGAGATCGGATTCGTTTGAGGAGAAAGATG 655
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 601 TTGGGAGAATGGCGGGTCAATTTGCGAAACCAAGATCGGATTCGTTTGAGGAGAAAGATG 660
Query 656 GAGTGAAATTGCCGAGTTACAGAGGAGATAACATTAATGGAGATGCGTTTGATTCGAAAT 715
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGTGAAATTGCCTAGTTACAGAGGAGATAACATTAATGGAGATGCGTTTGATTCGAAAT 720
Query 716 CTAGGATTCCTGATCCACAGAGGATGATTAGAGCATATTGTCAATCTGCAGCTACTTTGA 775
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 CTAGGATTCCTGATCCACAGAGGATGATTAGAGCTTATTGTCAATCTGCAGCTACTTTGA 780
Query 776 ATCTTTTGAGAGCTTTTGCTACTGGTGGTTATGCTGCTATGCAGAGAGTTACCCAATGGA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 ATCTTTTGAGAGCTTTTGCTACTGGTGGTTATGCTGCTATGCAGAGAGTTACTCAATGGA 840
Query 836 ATCTTGATTTCACTGAACGTAGTGAGCAAGGAGACAGGTACCGTGAACTAGCTAACCGTG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCTTGATTTCACTGAACGTAGTGAGCAAGGAGACAGGTACCGTGAACTAGCTAACCGTG 900
Query 896 TTGATGAAGCGCTCGGTTTCATGCACGCTGCTGGACTAACGCTCGATCATCCCATAATGC 955
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TTGATGAAGCGCTTGGTTTCATGCACGCTGCTGGATTAACGCTCGATCATCCCATAATGC 960
Query 956 AAACAACCGACTTCTGGACTTCTCATGAATGTTTGCTCTTGCCTTATGAACAATCACTAA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAACAACCGACTTCTGGACTTCTCATGAATGTTTGCTCTTGCCTTATGAACAATCACTAA 1020
Query 1016 CAAGGCTAGACTCGACCTCTGGTCTCTACTATGACTGTTCTGCTCATATGATTTGGGTTG 1075
||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||||| |
Sbjct 1021 CAAGGCTTGACTCAACCTCTGGTCTCTACTACGATTGTTCTGCCCATATGATTTGGGTCG 1080
Query 1076 GTGAGAGAACCAGACAGCTCGATGGTGCCCATGTCGAGTTCTTAAGAGGTGTTGCTAATC 1135
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTGAGCGAACCAGACAGCTAGATGGTGCCCATGTCGAGTTCTTAAGAGGTGTTGCTAATC 1140
Query 1136 CTCTTGGAATCAAGGTGAGTGATAAAATGGATCCAAAGGAGCTAGTGAAGTTGATTGAGA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTCTTGGAATCAAGGTGAGTGATAAAATGGATCCAAAGGAGCTAGTGAAGTTGATTGAGA 1200
Query 1196 TCTTGAATGCTGACAATAAGCCTGGAAGGATTACCATAATCACAAGAATGGGAGCTGAGA 1255
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 TCTTGAATGCTGACAATAAGCCTGGAAGGATTACAATAATCACAAGAATGGGAGCTGAGA 1260
Query 1256 ATATGAGAGTGAAGCTTCCGCATTTGATCAGAGCTGTGCGACGCGCTGGACAGATTGTGA 1315
||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 1261 ATATGAGAGTGAAGCTTCCTCATTTGATCAGAGAAGTGCGACGTGCTGGACAGATTGTGA 1320
Query 1316 CTTGGGTCAGTGATCCAATGCACGGAAACACCATTAAGGCTCCTTGTGGTCTCAAGACTC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTTGGGTCAGTGATCCAATGCACGGAAACACCATTAAGGCTCCTTGTGGTCTCAAGACTC 1380
Query 1376 GTCCTTTTGACGCCATCTTGGCTGAAGTGAGAGCGTTCTTCGACGTGCACGAGCAAGAAG 1435
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1381 GTCCCTTTGACGCCATCTTGGCTGAAGTGAGAGCTTTCTTCGACGTGCACGAGCAAGAAG 1440
Query 1436 GTAGCCACCCAGGAGGAATTCACCTAGAAATGACCGGTCAGAACGTGACCGAGTGCATCG 1495
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1441 GTAGCCACCCCGGAGGAATTCACCTAGAAATGACTGGTCAGAACGTGACCGAGTGCATCG 1500
Query 1496 GTGGTTCACGCACAGTCACCTTCGATGACTTGGGTTCACGTTACCACACCCACTGTGATC 1555
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1501 GTGGTTCACGCACAGTCACATTCGACGACTTGGGTTCACGTTACCACACGCACTGTGATC 1560
Query 1556 CTCGCCTTAACGCATCACAGTCTCTCGAGCTGTCCTTCATCATCGCCGAACGTCTTAGAA 1615
|||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1561 CTCGCCTTAATGCTTCACAGTCTCTTGAGCTCTCCTTCATCATCGCCGAACGTCTTAGAA 1620
Query 1616 AGAGACGCATCAAGTCTCAACAGGCTTTTGCTGTCTAATCAAATAAACATTGGCTTATAA 1675
|||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 1621 AGAGACGCATCAAGTCTCAAAAGGCTTTTGCCCTCTAATCAAATAAACATTG-CTTATAA 1679
Query 1676 TAATATCTATCTACATAAAtgtgtgtgtgtg--AACTTAATACAATCTCATTTATCTTTG 1733
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1680 TAATATCTATCTATATAAATGTGTGTGTGTGTGAACTTAATACAATCTCATTTATCTTTG 1739
Query 1734 ATTCAAATCTTGTGTCAAAAGAACGCTTAAGGTTT-TGTTTTAATGTTGTTAGTGAGTAT 1792
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1740 ATTCAAATCTTGAGTCAAAAGAACGCTTAAGGTTTCTGTTTTAATGTTGTTAGTGAGTAT 1799
Query 1793 TATTTCCATTTTGGACTTAATAAAATCATGGATGGTTGGATTTTATTAATGTTGTGAACA 1852
||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||
Sbjct 1800 TATTTCCATTTTGGATTTAATATAATCATGGATGGTTGGGTTTTATTTATGTTGTGAACA 1859
Query 1853 GTTTTG 1858
||||||
Sbjct 1860 GTTTTG 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91967398440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5