BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472486
Length=2033
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22460.1 | Symbols: | O-fucosyltransferase family protein |... 2682 0.0
> AT1G22460.1 | Symbols: | O-fucosyltransferase family protein
| chr1:7927428-7930657 REVERSE LENGTH=2106
Length=2106
Score = 2682 bits (1452), Expect = 0.0
Identities = 1841/2022 (91%), Gaps = 53/2022 (3%)
Strand=Plus/Plus
Query 46 AAACAAGATCGTCGATTTTTGGGCATTAGACACCATCGTGGCATTG---G-TTGATTGAC 101
||| ||||||||||||||||||||||| || ||||||||||||| | ||||||| |
Sbjct 77 AAA-AAGATCGTCGATTTTTGGGCATT---CATCATCGTGGCATTGATTGATTGATTGGC 132
Query 102 CTCTCATACTTTCCTTTTTCGGCAAATAC-CT-CTCTC-----T----A--CT-ACTC-C 146
|||||||||||||||||||||| ||| | || ||| | | | || | || |
Sbjct 133 ATCTCATACTTTCCTTTTTCGGCTAAT-CTCTACTCCCAAAAATAGAAAGTCTCATTCAC 191
Query 147 -CA-CAA-ATAGAA-AGTCTCATCAAG-A-ATTCAAGATCCGTTTTTTCTGAATCTTTTC 200
|| ||| | || || || ||| | |||||||||||||||||||||| |||||||
Sbjct 192 TCACCAAGCGAAAACAG-AACAAGAAGAAGATTCAAGATCCGTTTTTTCTGATTCTTTTC 250
Query 201 TTTGACGAGCGGTTTG-TTTGTCTTGAATGTTGCCGTTTGGATCGTTCTCA-GAGAAATG 258
|||||||||||||||| ||| || |||||||| ||| ||||||| ||| || |||||||
Sbjct 251 TTTGACGAGCGGTTTGCTTT-TCCTGAATGTTTCCGGTTGGATCTTTCACATAAGAAATG 309
Query 259 CGGCGGCGGAGGAAGACGGTTGTGGTGGCGGTAGTGATACGGAGGGTGCTGATATGCGCC 318
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 310 CGGCGGCGGAGGAAGACGGTTGTGGTGGCGGTAGTGATACGGAGGGTGCTAATATGGGCC 369
Query 319 ATATGCGTAATGACATTACTCTGTTTTCTCACCGTACACATCTATATTGCTCCTTTCAAT 378
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 370 ATATGCGTAATGACATTACTCTGTTTTCTCACCGTACACATCTATGTTGCTCCTTTCAAT 429
Query 379 AGACTCCCTAGGAGGCTTCATCTTAATCACCACAACACTCGCAGAGGAGATATCATCGAT 438
|||||||||| | |||||| ||||| ||||||||||||||| ||||| ||||||| |||
Sbjct 430 AGACTCCCTA--A-GCTTCACCTTAACCACCACAACACTCGCCGAGGATATATCATAGAT 486
Query 439 TACAACAAATCCATCACAGAACAGAGCTTAACGAGGAATCTGTCTCGTTTAGAATCGAAT 498
||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 487 TACAATAAATCCATCACAGAACAGAGTTTAACGAGGAATCTGTCTCGTCCGGAATCTAAT 546
Query 499 GAAGCTTCTTCTCTTATCACCAAACCAAAGGA-AAATGAGATTCAGTAT-AAGAGTTCAA 556
||| ||| |||| ||| |||| || || || |||||||||||||||| || ||||| |
Sbjct 547 GAA-ATTC--CTCTCATCTCCAATCCCAA-GACAAATGAGATTCAGTATCAA-AGTTCGA 601
Query 557 TCTCGGAACACATCAAGAACACCGAGCTAGTACCTCCTCATTTCTCTACAAG-CC--CTT 613
|||||||||||||||| |||||||||||||| ||||||||| | |||||||| || |||
Sbjct 602 TCTCGGAACACATCAACAACACCGAGCTAGTTCCTCCTCATGTGTCTACAAGCCCTTCTT 661
Query 614 CTTCTTCCAAGTTGAACATGACAAGCGGGATACCGGATTTCGACAAGCTTTGGAAACCTC 673
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 662 CTTCTTCCAAGTTGAACATTACAAGCGGGATACCGGATTTCGACAAGCTTTGGAAACATC 721
Query 674 CACCGAACCGAGATTTCGTCCCTTGTGTCAATCCCAATCCTAGTTACACATCTTCACTGG 733
||||||||||| ||||||| |||||||||| |||||||||||||||||||||| || |||
Sbjct 722 CACCGAACCGAAATTTCGTGCCTTGTGTCAGTCCCAATCCTAGTTACACATCTCCATTGG 781
Query 734 AATCTAGAGGCTATCTTCTTGTTCACACAAATGGCGGGCTTAACCAGATGCGCGCTGGGA 793
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 782 AATCTAGAGGCTATCTTCTTGTTCACACGAATGGCGGGCTTAACCAAATGCGCGCTGGGA 841
Query 794 TATGTGACATGGTAGCTATAGCTCGGATTATAAATGCAACACTCGTAGTCCCAGAGCTCG 853
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 842 TATGTGACATGGTAGCTATAGCTCGGATTATAAATGCAACACTTGTAGTCCCCGAGCTCG 901
Query 854 ATAAACGGTCTTTCTGGCAGGATACTAGCAAATTCTCGGATGTCTTTGATGAAGATCACT 913
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 902 ACAAACGATCTTTCTGGCAGGATACTAGCAAATTCTCGGATGTTTTTGATGAAGATCACT 961
Query 914 TCATCAATGCTTTATCTAAAGATATAAGAGTCATCAAGAAACTTCCAAAAGGTATTGATG 973
|||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 962 TCATCAATGCTTTATCAAAAGATATAAGAGTCATCAAGAAGCTCCCAAAAGGCATTGATG 1021
Query 974 GACTT-ACAAAAGTGGTTAAGCATTTCAAAAGCTATTCAGGATTGAGTTACTACCAAAAT 1032
|| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1022 GA-TTAACAAAGGTGGTTAAGCATTTCAAAAGCTACTCAGGATTGAGTTACTACCAAAAT 1080
Query 1033 GAGATAGCTAGCATGTGGGATGAATACAAGGTGATCCGAGCCGCCAAATCCGATTCTCGT 1092
||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 1081 GAGATAGCTAGTATGTGGGATGAATATAAAGTGATCCGAGCCGCGAAATCCGATTCTCGT 1140
Query 1093 CTAGCAAACAACAATCTACCTCCTGATATCCAGAAGCTGCGTTGCCGTGCATGCTATGAG 1152
|||||||||||||| |||||||||||||| ||||||||||| || ||||| || ||||||
Sbjct 1141 CTAGCAAACAACAACCTACCTCCTGATATTCAGAAGCTGCGATGTCGTGCTTGTTATGAG 1200
Query 1153 GCTCTACGCTTCTCTACTAAAATCAGATCAATGGGAAAACTTTTGGTCGATAGGATGAGG 1212
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1201 GCTCTACGCTTCTCTACTAAAATCAGATCAATGGGAGAACTTTTGGTCGATAGGATGAGG 1260
Query 1213 TCTTATGGTCTATACATCGCGTTGCATTTGAGATTTGAGAAAGACATGCTAGCTTTCAGC 1272
|||||||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||
Sbjct 1261 TCTTATGGTCTATACATCGCATTGCATTTGAGGTTCGAGAAAGAGATGCTAGCATTCAGC 1320
Query 1273 GGATGCAACCATGGTTTATCTGCTTCAGAAGCTGCTGAGCTAAGGAAGATAAGGAAGAAC 1332
|| |||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 1321 GGCTGCAACCATGGTCTATCCGCTTCTGAAGCTGCTGAGCTAAGGAGGATAAGGAAGAAC 1380
Query 1333 ACAGCGTATTGGAAAGTGAAAGACATTGATGGAAGAGTACAAAGACTCAAAGGTTATTGC 1392
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1381 ACAGCGTATTGGAAAGTGAAAGACATTGACGGAAGAGTACAAAGACTCAAAGGCTATTGT 1440
Query 1393 CCATTGACTCCAAAAGAAGTTGGAATCTTGCTAACAGCTCTTGGATATTCATCAAACACA 1452
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 1441 CCATTGACTCCAAAAGAAGTTGGGATATTGCTAACAGCTCTTGGATATTCATCAGACACA 1500
Query 1453 CCGATATATATAGCTGCTGGTGAGATTTACGGTGGTGAGTCTCGGTTAGCCGATTTACGC 1512
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CCGGTATATATAGCTGCTGGTGAGATTTACGGTGGTGAGTCTCGGTTAGCCGATTTACGC 1560
Query 1513 TCTCGTTTCTCCATGTTAACGAGTAAGGAAAATTTGGCAACTAGCGAAGAGCTTAAGCCT 1572
||||| ||||||||||||| |||||||||||| |||||||| || |||||||||||| ||
Sbjct 1561 TCTCGGTTCTCCATGTTAATGAGTAAGGAAAAATTGGCAACAAGAGAAGAGCTTAAGACT 1620
Query 1573 TTTATGAACCACTCAACTCAAATGGCTGCACTTGATTACATTGTTTCTGTGGAAAGCGAC 1632
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 1621 TTTATGAACCACTCAACTCAAATGGCTGCACTTGACTACATTGTTTCCATCGAAAGCGAT 1680
Query 1633 GTTTTTATTCCGTCATATAGCGGAAACATGGCAAGAGCTGTTGAAGGGCATCGTCGGTAT 1692
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 1681 GTTTTTATTCCGTCGTATAGTGGAAACATGGCGAGAGCTGTTGAAGGGCATCGTCGGTTT 1740
Query 1693 CTTGGTCACCGAAAAACTATCTCTCCGGACAGGAAAGGCATTGTGAGGTTGATAGATAGA 1752
||||||||||| ||||||||||||||||||||||||| |||||| |||||| |||| |||
Sbjct 1741 CTTGGTCACCGGAAAACTATCTCTCCGGACAGGAAAGCCATTGTAAGGTTGGTAGACAGA 1800
Query 1753 ATTGGAAGAGGAGCTGAGAAAGATAACCGAAAAGTGTATGAACGAATC-ATAGATATTCA 1811
|||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||
Sbjct 1801 ATTGGAAGAGGAGCTGAGAAAGATAACCGAAAAGTGTATGAAAGAATCAAT-GAGATTCA 1859
Query 1812 CAAAACCCGACAAGGATCGCCGAAGAGGAGAAAAGGGCCAGTTTCTGGAACAAAAGGTTT 1871
|||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1860 CAAAACCCGACAAGGATCACCGAGGAGGAGAAAAGGGCCAGCTTCTGGAACAAAAGGTTT 1919
Query 1872 GGAGAGACATCGTTCTGAAGAATCCTTCTACGAGAACCCATTACCGGAGTGCCTCTGCCA 1931
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1920 GGAGAGACATCGTTCTGAAGAATCCTTCTACGAGAACCCATTACCAGACTGTCTCTGCCA 1979
Query 1932 GAGAGACCCAAGTAAAGCGAGATAATGGACATGAAACTTGAAATTTTTCATGCAAATTTA 1991
|||||||||||||||||||||||||| ||||||| ||||| ||||| || | |||||||
Sbjct 1980 GAGAGACCCAAGTAAAGCGAGATAATAGACATGACACTTGGAATTT--CAAGTAAATTTA 2037
Query 1992 GCATTGGAGATAAGTTTCAATGATAGTTATAGGCATATTATA 2033
||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 2038 GCATTGGGGATAAGTTTCAATGATAGTAATAGGTATATTATA 2079
Score = 91.6 bits (49), Expect = 3e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1 GTGACCCTTCTCTTACCTTTTTAGCTTCTTAACTCTTAAAATAGAAAACAAG 52
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGACCCTTCTCTAACCTTTTTAGCTTCTTAACTCTTAAAATAGAAAACAAG 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100752493815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5