BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472488
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22480.1 | Symbols: | Cupredoxin superfamily protein | chr1... 881 0.0
AT1G72230.1 | Symbols: | Cupredoxin superfamily protein | chr1... 267 2e-70
> AT1G22480.1 | Symbols: | Cupredoxin superfamily protein | chr1:7934162-7935382
REVERSE LENGTH=923
Length=923
Score = 881 bits (477), Expect = 0.0
Identities = 657/738 (89%), Gaps = 35/738 (5%)
Strand=Plus/Plus
Query 82 ACAAACTAATTAGGAGTTATCGTAAGAAAAGaaaaaaaaaGTTATCCTAAGAGAGTCGAC 141
|||||||||||||||||||||||||| |||| ||| || ||||||||| | ||| | |
Sbjct 156 ACAAACTAATTAGGAGTTATCGTAAG-AAAG-AAATAAGAGTTATCCT-A-AGA-T-G-T 208
Query 142 TAAATTAACTCCAATTAAACAC-CCCCTATCTAGCtatatatatatatGCAT--GTCACA 198
||| | ||| || | ||||| |||| | || |||||||||||| ||||| ||||||
Sbjct 209 TAACTCGACT--AAATCAACACACCCC--T-TATCTATATATATATCTGCATAAGTCACA 263
Query 199 AGAAGTTATCATAAAATAGTAATTCCC-T--T----ATA-T-T-TA-ACAA-ATAGTATA 246
||||||| ||||||||||||||||||| | | ||| | | || | || ||| | |
Sbjct 264 AGAAGTT-TCATAAAATAGTAATTCCCTTAATAAAAATAGTATATATAAAACATA-AAGA 321
Query 247 AAACAATATGAGCAGACTTCTTGGTTGCCTTGTCCTCATATTCTTCTCTATGGTCGCACC 306
||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 322 AAAAAATATGAGCACACTTCTTGGTTGTCTTGTCCTCATA---TTCTCTATGGTCGCACA 378
Query 307 TGCCTCATCCGCCACTCTTACGGTGAACTGGTCCCTTGGCACCGACTACACTCCGCTCGC 366
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 379 GGCCTCATCCGCCAGTCTTACGGTGAACTGGTCCCTTGGCACCGACTACACTCCGCTCAC 438
Query 367 CACTGGAAAGTCCTTCGCTGTCGGCGATACCATCGTGTTCAACTATGGTGCGGGTCACAC 426
|||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 439 CACTGGAAAGACCTTCTCTGTCGGCGATACCATAGTGTTCAATTATGGTGCGGGTCACAC 498
Query 427 GGTGGACGAAGTGAGCGAGAATGACTACAAGAGTTGCACTTTAGGGAACTCCATTACGTC 486
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 499 GGTGGATGAAGTGAGCGAGAACGACTACAAGAGTTGCACTCTAGGGAACTCCATTACGTC 558
Query 487 CGACAGCAGCGGAACCACGACCATAGCTCTCACGACCACTGGTCCTCGCTACTTCATATG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 559 CGACAGCAGCGGAACCACGACCATAGCTCTCACGACCACTGGTCCTCGCTACTTCATCTG 618
Query 547 TGGAATCCCCGGCCATTGCGCCGCCGGTATGAAGCTGGCAGTCACCGTCGCGTCGGCCTC 606
||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 619 TGGAATCCCCGGCCATTGCGCTGCCGGTATGAAGCTCGCAGTCACCGTCGCGTCGAACTC 678
Query 607 TTCAAACGTTGTAGGTGGTGGCACCACCACACCAACCCCTTTCACCGGAGGTAGTGGT-- 664
|||||||| ||||| |||||||||||| ||||||||||| |||||||||||| |||||
Sbjct 679 TTCAAACGGTGTAGCTGGTGGCACCACTACACCAACCCCATTCACCGGAGGTGGTGGTGG 738
Query 665 T-ACAACCCCACGACCACACAGGCCATTCCTTGTGGGGCTTGGACCGTGTCTTGTCCATT 723
| |||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 739 TTACAATCCCACGACCACACAGGCCATTCCTTGTGCGGCTTGGGCCGTGTCCTGTCCATT 798
Query 724 AGGGGCTTTGGTTGCTACTTGGGCCGTTGTTTTTTATGCTTTGTCTTTGTCTTAGTTGAA 783
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 799 ACGGGCTTTGGTTGCTACTTGGGCCGTTGTTTTTTATGCTTTGGCTTTGTCTTAGTTGAA 858
Query 784 ATTTTGTGGTGTATATGT 801
||| |||||| | |||||
Sbjct 859 ATTGTGTGGTCTGTATGT 876
Score = 110 bits (59), Expect = 3e-23
Identities = 65/68 (96%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1 GGAAGTTCCACCTGCTTTTTGGTTTAGTCCATATATTTAATCATTGTGAAGCGGTGACGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 14 GGAAGTTCCACCTGCTTTTTGGTTTAGTCCATATATTTAATCATTGTGAAGCTATGACGA 73
Query 61 AAACTGAT 68
|||||||
Sbjct 74 TAACTGAT 81
> AT1G72230.1 | Symbols: | Cupredoxin superfamily protein | chr1:27188066-27189244
FORWARD LENGTH=918
Length=918
Score = 267 bits (144), Expect = 2e-70
Identities = 266/325 (82%), Gaps = 8/325 (2%)
Strand=Plus/Plus
Query 262 ACTTCTTGGTTGCCTTGTCCTCATATTCTTCTCTATGGTCGCACCTGCCTCATCCGCCAC 321
|||| |||||| |||||| |||| |||||| | || | ||||||||||| || ||||
Sbjct 239 ACTTGTTGGTTTTCTTGTCATCATCTTCTTCAATGTGTTTGCACCTGCCTCTTCTGCCAG 298
Query 322 TCTTACGGT-GAACTGGTCCCTTGGCACCGACTACA-CTCCGCTCGCCACTGGAAAGTCC 379
|| | || ||| ||||| || || | ||||| | || || | || || |||||||||
Sbjct 299 TCACCCCGTCGAA-TGGTCGCTCGGGAAAGACTATAGCT-CGTTGGCTACCGGAAAGTCC 356
Query 380 TTCGCTGTCGGCGATACCATCGTGTTCAACTATGGTGCGGGTCACACGGTGGACGAAGTG 439
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 TTCGCGGTCGGCGATACCATCGTGTTCAACTACGGTGCGGGTCACACGGTGGACGAAGTG 416
Query 440 AGCGAGAA-TGACTACAAGAGTTGCACTTTAGGGAACTCCATTACGTCCGACAGCAGCGG 498
||||| || |||||||||||||||||| || |||||| | ||| | || ||||| || ||
Sbjct 417 AGCGA-AAGTGACTACAAGAGTTGCACATTGGGGAACGCAATTTCTTCGGACAGTAGTGG 475
Query 499 AACCACGACCATAGCTCTCACGACCAC-TGGTCCTCGCTACTTCATATGTGGAATCCCCG 557
|||||| | |||||||||| ||| || |||||||| ||||||||| || || |||||||
Sbjct 476 AACCACAAGTATAGCTCTCAAGAC-ACCTGGTCCTCACTACTTCATCTGCGGTATCCCCG 534
Query 558 GCCATTGCGCCGCCGGTATGAAGCT 582
|||| ||| | | ||| ||||||||
Sbjct 535 GCCACTGCACTGGCGGGATGAAGCT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5