BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472490
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22500.1 | Symbols: | RING/U-box superfamily protein | chr1... 1557 0.0
> AT1G22500.1 | Symbols: | RING/U-box superfamily protein | chr1:7949476-7950900
FORWARD LENGTH=1425
Length=1425
Score = 1557 bits (843), Expect = 0.0
Identities = 1125/1261 (89%), Gaps = 19/1261 (2%)
Strand=Plus/Plus
Query 1 TATTTTATAAAGCTCTTTCACCGG-CAAA---TTGGTCCTCATGAAACCGGGAAGTCCAA 56
||||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 1 TATTTTATAAAGCTCCTTCACCGGTAAAAGCCTTGGTCCTCATGAAACCGGGAAGCCCAA 60
Query 57 CAACTTACCTCCACCGTCAAATCGTTAAACCATTTGCAACCATCGATGGTGGTCATGTCA 116
|||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GTACTTACTTCCACCATCAAATCGTCAAACCATTTGCAACCATCGATGGTGGTCATGTCA 120
Query 117 CGTTTAAGCTTCTACTCTTCCTTCGTCCTACTACTGTTACAGCTCGCTGTCGCTCAA-AC 175
|| |||||||||||||||| ||| | |||||||||||| || ||| ||||||| | |
Sbjct 121 CGAGTAAGCTTCTACTCTTCTTTCTTGCTACTACTGTTAGAGGTCGTTGTCGCT-AGCAG 179
Query 176 CGAGTTTGCTAATGATGGAGGAAGGACAAA-TATCAGTCCAAGCATGGTTATACTCATGA 234
|||||||| | ||||| |||||| ||| | ||||||||| || || |||| ||||||
Sbjct 180 CGAGTTTG--A-TGATGAAGGAAGAACATCGT-TCAGTCCAACCACGGCTATAATCATGA 235
Query 235 TCGTACTCGTTAGTGtttttttCGGAATTGGATGTATCTCCGTCTCCATGCGGAGTTGTA 294
||||||||||||||||||| |||| | |||||||||||||||||| |||| |||| |||
Sbjct 236 TCGTACTCGTTAGTGTTTTCTTCGCACTTGGATGTATCTCCGTCTACATGAGGAGGTGTC 295
Query 295 TCGAGCGA-GCTACAGGGT-TGGGCGGCTATAGTCG-CCAAGGAAACTGGCGTAACGTGA 351
|| ||| | ||| | ||| ||| | || | || | ||| |||||||||| ||||||||
Sbjct 296 TCCAGC-ACGCT-CTGGGGATGGACAGCGGTGGTGGTCCA-GGAAACTGGCTTAACGTGA 352
Query 352 GGCAAACGACGGCGCGTGGGCTCGACGCGTCTGTTATAGAAACGTTTCCAACGTTTCGTT 411
|||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 353 GGCAAACGACGGAGCCTGGGCTAGACGCGTCTGTTATAGAAACGTTTCCAACGTTTCCTT 412
Query 412 ACTCTACCGTGAAGACGTTGAGGATCGGCAAAGAAGCTTTGGAGTGTCCCGTTTGCCTCA 471
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 413 ACTCTACAGTGAAGACGTTGAGGATCGGTAAAGAAGCTTTGGAGTGTCCCGTTTGTCTCA 472
Query 472 ACGAGTTCGAGGACGACGAATCGCTGCGTTTGATTCCTCAGTGTTGTCATGTGTTTCATC 531
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 473 ACGAGTTCGAGGACGACGAAACGCTGCGTTTGATTCCTCAGTGTTGTCACGTGTTTCATC 532
Query 532 CTGGTTGCATTGAGGCTTGGCTCCGTTCTCAAACAACATGTCCTCTTTGCCGTGCCAATC 591
||||||||||||| || |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 533 CTGGTTGCATTGATGCCTGGCTCCGTTCTCAGACCACATGTCCTCTTTGCCGAGCCAATC 592
Query 592 TAGTTCCTGTACCAGGTGAATCTGTTTCTTTGGAGATACCCGGTTTAGCTAGAGAAACCG 651
| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 593 TCGTTCCTGTACCGGGTGAGTCTGTTTCTTCGGAGATACCCGGTTTAGCTAGAGAAACCG 652
Query 652 GTCAGAGCTCTCTCGGGACGCCGATTGATGATAACGGGAAAAGGGTTTTGGCTTCACCGG 711
|||||| ||||||| | |||||||||||||||||| ||||||||||||| ||||||| |
Sbjct 653 GTCAGAACTCTCTCAGAACGCCGATTGATGATAACCGGAAAAGGGTTTTAACTTCACCTG 712
Query 712 ACGAGCGGTTGATTGACTCTGTGGCTTGGACGGGTAACCAAAGCATGCCACGTAAGTCCA 771
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 713 ACGAGCGGTTGATTGACTCAGTGGCTTGGACGGGTAACCAAAGCATGCCACGTAAATCCA 772
Query 772 TGTCTACAGGTTGGAAACTAGCTGGATTGTTCAGCCCGACTAGTTCTCCCGGTCAACCAG 831
|||||||||||||||||||||||| ||||| ||||||| ||||||| || || ||||| |
Sbjct 773 TGTCTACAGGTTGGAAACTAGCTGAATTGTACAGCCCGGCTAGTTCACCGGGCCAACCGG 832
Query 832 AGGAGAATCTCGACCGGTTTACACTGAGGTTTCCACAAGAGATACACGATCAGCTCGTGA 891
|||||||||||||||||| ||| |||||||| |||||||||||||| || ||||| ||||
Sbjct 833 AGGAGAATCTCGACCGGTATACGCTGAGGTTACCACAAGAGATACATGACCAGCTTGTGA 892
Query 892 AATCCAGCC-GAGGAAACCAAGGGTCAAAAGACCATGTGGCGTTACCTCAAGCAAGGAGC 950
| ||||||| | ||||| ||||||||||||| ||| |||| |||||||||| |||||||
Sbjct 893 ACTCCAGCCTG-GGAAAGCAAGGGTCAAAAGGCCAACTGGCCTTACCTCAAGAAAGGAGC 951
Query 951 TCGGTTAGAGGGTACAGAACCAAAAGCCTAGGGACTGAAAAGAACTATTTCTACTCTGAA 1010
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 952 TCGGTTAGAGGGTTCAGAACCGGAAGCCTAGGGACTGAAAAGAACTATTTCTACTTTGAA 1011
Query 1011 CGGTTTGATCAAGACGGTCGATTAGACCGAAGACCATTTTCTATAACTCCTCCGTACCAT 1070
|||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 1012 CGGTTTGATCAAGACGGTCGGTTGGACCGGAGACCATTTTCTATAACTCCTCCATACCAT 1071
Query 1071 ACCCGGTCGATCCAGTCTCCGGATGAGATTATCAACGGTAGCGGTAATTATCAGGAGCGT 1130
||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 1072 ACCCGGTCGATACAGTCTCCGGATGAGATTATCAACGCTAGTGGTAATTATCAGGATCGT 1131
Query 1131 CCTGGTGCACCTAAAGGTTTGCTTCTAGCGATAAGGTCACCCTTTGATCGGTTATTCACC 1190
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 1132 GCTGGTGCACCTAAAGGTTTGCTTCTAGCAATAAGGTCACCGTTTGATCGGTTATTTACT 1191
Query 1191 AAGAAGAACAATGTCGGTGAACGTTCGTACCTGCGATCCAGCGATGCCAGCCCTGCCTAG 1250
|||||| |||| |||||| ||||||||||| | |||| ||||||| ||||||| ||||
Sbjct 1192 GGGAAGAAAAATGCCGGTGAGCGTTCGTACCTTCAATCCGGCGATGCGAGCCCTGTCTAG 1251
Query 1251 G 1251
|
Sbjct 1252 G 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5