BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472492

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22520.2 | Symbols:  | Domain of unknown function (DUF543) |...   617    3e-176


> AT1G22520.2 | Symbols:  | Domain of unknown function (DUF543) 
| chr1:7952996-7954418 REVERSE LENGTH=654
Length=654

 Score =  617 bits (334),  Expect = 3e-176
 Identities = 379/400 (95%), Gaps = 5/400 (1%)
 Strand=Plus/Plus

Query  1    AAACAAAACCCTCCAGATCGaaaaaaaaaaaTCGAGAAGCGAATTTGCGGAAGAACAgaa  60
            ||| |||| |||||||||||   |||||||||||||||||||| | ||||||||||||||
Sbjct  6    AAAAAAAAACCTCCAGATCG---AAAAAAAATCGAGAAGCGAA-TAGCGGAAGAACAGAA  61

Query  61   aaaggaaaattcagagaatcaaatcggaaaggtagaagaatcggagtcggaaaaatggaa  120
            ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  62   AAAGGGAAATTCTGAGAATCAAATCGGAAAGGTAGAAGAATC-GAGTCGGAAAAATGGAA  120

Query  121  aCGACGAAGAGTAACAACACCGATTCCGATGTAAACGCCAAATGGGACGCTTGTCTCGAT  180
            |||||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||
Sbjct  121  ACGACGAAGAGTAACAGCAGCGAGTCCGATGTCAACGCCAAATGGGACGCTTGTCTCGAT  180

Query  181  CTCACTGCTCGTCGCTTCGTCTACTCCTCCCTCGGCGGCGCTTTCGCCGGCCTTCTCTTT  240
            ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| 
Sbjct  181  CTCACTGCTCGTCGCTTTGTCTACTCTTCCCTCGGCGGCGCTTTCGCCGGTCTTCTCTTC  240

Query  241  TTCAGGAGTCCGGTTACGAGATGGGCTTCGATTGCTTTTGGTGCTGGAATTGGTATTGGT  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  TTCAGGAGTCCGGTTACGAGATGGGCGTCGATTGCTTTTGGTGCTGGAATTGGTATTGGT  300

Query  301  TCTGCATACACAGATTGTTCTCGTGTTTTTGATGCATCTTCTTCAACTTCAGCTACTTTA  360
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  301  TCTGCATACACAGATTGTTCTCGTGTTTTTGATGCGTCTTCTTCAACTTCAGCTACTTTA  360

Query  361  TTAGCAGCTCCCAAGAGTACAGAGACTTCTGTATCTCAGG  400
            |||||||||||||||||||| |||||||||||||||||||
Sbjct  361  TTAGCAGCTCCCAAGAGTACGGAGACTTCTGTATCTCAGG  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31697746757


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5