BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472494
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22540.1 | Symbols: | Major facilitator superfamily protein... 2791 0.0
> AT1G22540.1 | Symbols: | Major facilitator superfamily protein
| chr1:7964042-7966436 FORWARD LENGTH=2048
Length=2048
Score = 2791 bits (1511), Expect = 0.0
Identities = 1791/1920 (93%), Gaps = 44/1920 (2%)
Strand=Plus/Plus
Query 1 AAATGTTCCACACTGATGCGAGT---AACACC-AACCATCTTCT-TGTTTTGtttttttA 55
|||||||||||| |||||||||| |||||| || |||| ||| | ||||||||| ||
Sbjct 4 AAATGTTCCACAGTGATGCGAGTAACAACACCAAAGCATC-TCTAT-TTTTGTTTTCTTC 61
Query 56 AGTGTCAAAATCAAAAGaa-aaa--aaaaaT-G---G-TTGATTGATACAAAAGACTTCT 107
| | || | | ||||| || ||| ||| | | | ||||||||||||||||||||||
Sbjct 62 A-T-TC-ACACCAAAACAAGAAATCAAATTTGGTTTGATTGATTGATACAAAAGACTTCT 118
Query 108 TTA-AGA--TA-----T--TTTGGAGAAATCGATTAAC-CATAATGGCGATCTCCGGCGC 156
| | | | || | ||||||||| |||||||| | |||| |||||||||||||
Sbjct 119 TCAGATATTTACTTCTTCATTTGGAGAAGCCGATTAACTGA-AATGTCGATCTCCGGCGC 177
Query 157 TGTTGATGAAGCCGGAACTCCACTTCTCGCTGTAACCGTCGACGGATCCGTCGACTACA- 215
|||||||||||| || |||||||||||||| | || | | ||||||||||||
Sbjct 178 TGTTGATGAAGCTGGGACTCCACTTCTCGC--T----GT---C--A-CCGTCGACTACAG 225
Query 216 GAAGCAAACCCGCCGTTAGATCTTCCTCCGGTGGCTGGAGATCCGCCGGATTCATCATCG 275
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GAA-CAAACCCGCCGTCAAATCTTCCTCCGGTGGCTGGAGATCCGCCGGATTCATCATCG 284
Query 276 GTGTGGAGGTGGCTGAGCGATTCGCTTACTACGGGATATCGTCGAATCTGATTACGTATT 335
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 285 GTGTGGAGGTTGCTGAGCGATTTGCTTACTATGGGATATCGTCGAATCTGATAACGTATT 344
Query 336 TGACGGGACCACTAGGACAATCGACGGCGGCTGCGGCGGCTAACGTCAACGCTTGGTCTG 395
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 345 TGACCGGACCACTGGGACAATCGACGGCGGCTGCGGCGGCTAACGTGAACGCTTGGTCTG 404
Query 396 GAACGGCGTCGTTGCTTCCTCTCCTTGGTGCTTTTGTCGCTGACTCGTTTCTTGGTCGTT 455
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 405 GAACGGCGTCGTTGCTTCCTCTCCTTGGTGCTTTTGTCGCTGACTCGTTTCTAGGTCGTT 464
Query 456 TCCGTACAATCCTCGCCGCCTCTGCTCTCTATATATTGGGGCTTGGTTTATTGACGTTAT 515
|||| |||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||
Sbjct 465 TCCGGACAATCCTCGCCGCCTCTGCTCTCTATATAGTGGGGCTGGGTGTATTGACTTTAT 524
Query 516 CTGCAATGATTCCTTTAGACTGCAAAGTTTCGAATCTACTCTTGTCATGCTCTCCTCGAT 575
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 525 CTGCAATGATTCCTTCAGACTGCAAAGTTTCGAATCTACTCTCGTCATGCTCTCCTCGAT 584
Query 576 TTCAAGTAATCACATTCTTTAGTGCCCTGTATCTAGTGGCGCTAGCTCAAGGCGGTCACA 635
|||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct 585 TTCAAGTAATTACATTCTTTAGTGCATTGTATCTAGTGGCTTTAGCTCAAGGTGGTCACA 644
Query 636 AGCCGTGTGTTCAGGCTTTTGGAGCGGATCAGTTTGATGAAAAGGAACCTGAAGAGTGCA 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AGCCGTGTGTTCAGGCTTTTGGAGCGGATCAGTTTGATGAAAAGGAACCTGAAGAGTGCA 704
Query 696 AAGCAAAGACTTCTTTCTTTAATTGGTGGTATTTTGGTATGTGCTTTGGGACGTTAACAA 755
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AAGCAAAGAGTTCTTTCTTTAATTGGTGGTATTTTGGTATGTGCTTTGGGACGTTAACAA 764
Query 756 CTCTATGGGTCTTGAATTACATCCAGGATAATCTAAGTTGGGCCTTAGGATTTGGTATTC 815
|||||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 765 CTCTATGGGTGTTGAATTATATCCAAGATAATCTAAGTTGGGCGTTAGGCTTTGGTATTC 824
Query 816 CATGCATTGCTATGGTAGTTGCTTTGGTTGTTTTCTTGCTTGGAACCTGCACTTATCGGT 875
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 825 CATGCATTGCTATGGTAGTTGCTTTGGTTGTTCTCTTGCTTGGAACCTGCACTTATCGGT 884
Query 876 TCAGTATTCGAAGAGAAGATCGAAGTCCTTTTGTGAGGATTGGAAATGTTTATGTAGCGG 935
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCAGTATTCGAAGAGAAGATCAAAGTCCTTTTGTGAGGATTGGAAATGTTTATGTAGCGG 944
Query 936 CTGTAAAGAACTGGAGTGTGTCAGCTTCAGCTGTAGCTGCTGCAGAGGAGAGACTTGGTC 995
||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 945 CTGTAAAGAACTGGAGTGTTTCAGCTTTAGATGTAGCTGCTGCAGAGGAGAGACTTGGTC 1004
Query 996 TTGTGTCTCGCAATAGCTCACAGCAATTTAGTTTTCTCAACAAAGCTCTGGTCGCAAAGA 1055
|||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TTGTGTCTTGCAGTAGCTCTCAGCAATTTAGTTTTCTCAACAAAGCTCTGGTCGCAAAGA 1064
Query 1056 ATGGTTCTTGTAGTATAGATGAACTCGAAGAAGCAAAATCAGTACTTAGGTTAGCTCCGA 1115
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1065 ATGGTTCTTGTAGTATAGATGAACTTGAAGAAGCAAAATCAGTGCTTAGGTTAGCTCCGA 1124
Query 1116 TATGGTTAACTTGCTTGGTTTATGCGGTTGTGTTTGCGCAGTCTCCGACTTTCTTCACCA 1175
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1125 TATGGTTAACATGCTTGGTTTATGCGGTTGTGTTTGCGCAGTCTCCAACTTTCTTCACCA 1184
Query 1176 AACAAGGAGCCACGATGGAGAGATCAATCACACCTGGTTACAAAATCTCTCCAGCTACCC 1235
|||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1185 AACAAGGAGCTACAATGGAGAGATCAATCACACCTGGTTACAAGATCTCTCCGGCTACCC 1244
Query 1236 TCCAGTCCTTCATCAGCCTCTCTATAGTCATCTTCATCCCCATCTACGACCGTGTACTCA 1295
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1245 TCCAGTCCTTCATCAGCCTCTCTATAGTCATCTTCATCCCAATCTACGACCGTGTACTAA 1304
Query 1296 TCCCAGTTGCAAGGTCGTTTACACATAAACCAGGCGGAATCACAATGCTTCAGAGAATCG 1355
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TCCCAATTGCAAGATCATTTACACATAAACCAGGCGGAATCACAATGCTTCAGAGAATCG 1364
Query 1356 GCACAGGCATATTCCTCTCTTTCCTTGCTATGGTAATAGCCGCTCTAGTGGAGATGAAAA 1415
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1365 GCACAGGCATATTCCTCTCTTTCCTTGCTATGGTTGTAGCCGCTCTAGTGGAGATGAAAA 1424
Query 1416 GGCTTAAAACTGCTGCGGATTACGGACTCATCGATTTGCCAGACGCTACGGTTCCAATGA 1475
||||||||||||||||||||||||| ||| | |||| || |||||||||||||||||||
Sbjct 1425 GGCTTAAAACTGCTGCGGATTACGGGCTCGTAGATTCACCTGACGCTACGGTTCCAATGA 1484
Query 1476 GTGTGTGGTGGTTAGTTCCTCAGTATGTTCTCTTTGGTATCACAGATGTTTTCGCAATGG 1535
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1485 GTGTGTGGTGGTTAGTTCCTCAGTATGTTCTCTTTGGTATCACGGATGTTTTCGCAATGG 1544
Query 1536 TGGGTCTTCAAGAGTTCTTCTATGACCAAGTCCCGAATGAGCTGAGGAGTGTGGGATTGG 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1545 TGGGTCTTCAAGAGTTCTTCTATGACCAAGTCCCGAATGAGCTGAGGAGTGTGGGGTTGG 1604
Query 1596 CTCTGTACTTGAGCATATTCGGTATTGGCAACTTTCTCAGCAGTTTCATGATATCAATCA 1655
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1605 CTCTGTACTTGAGCATATTCGGTATTGGTAACTTTCTCAGCAGTTTCATGATATCAATCA 1664
Query 1656 TTGAGAAAGCGACAAGCCAATCTGGTCAAGTGAGTTGGTTCGCAAACAACCTGAACCAGG 1715
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1665 TTGAGAAAGCGACAAGCCAATCTGGTCAAGCGAGTTGGTTCGCAAACAACCTGAACCAAG 1724
Query 1716 CTCATCTCGATTACTTTTACTGGTTACTCGCTTGTCTCAGCTTCATTGGCTTAGCCTCCT 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 CTCATCTCGATTACTTTTACTGGTTACTCGCTTGTCTCAGCTTCATTGGCTTAGCCTCCT 1784
Query 1776 ACTTGTATGTTGCAAAGTCTTACGTCTCTAAAAGGCTCAACACCAGTTAAACCCAAAATC 1835
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1785 ACTTGTATGTTGCAAAGTCTTACGTCTCTAAAAGGCTCGACACCAGTTAAACCCAAAATC 1844
Query 1836 TCGCGTTTAAATGTCGCAGGTACTCTCTTTCCCTCTCTTGTGTACTTCTTGAATACACAA 1895
|| ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1845 TCTCGTTTAAATATCGCAGGTACTCTCTTTCCCTCTCTTGTGTAATTTTTGAATACACAA 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94929230595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5