BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472497

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22590.2 | Symbols: AGL87 | AGAMOUS-like 87 | chr1:7983511-7...   673    0.0  


> AT1G22590.2 | Symbols: AGL87 | AGAMOUS-like 87 | chr1:7983511-7984235 
FORWARD LENGTH=725
Length=725

 Score =  673 bits (364),  Expect = 0.0
 Identities = 478/530 (90%), Gaps = 19/530 (4%)
 Strand=Plus/Plus

Query  176  GGTTAAGCGAGCTTCCAGTGGAGAAACAGACCAAATACATGATAGACCAGAAGGATCTCA  235
            |||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||||||
Sbjct  209  GGTTAAGCGAACTTCCGGTAGAGAAGCAGACCAAATACATGATGGACCAGAAGGATCTCA  268

Query  236  TGAACAAGATGATCCAAGACGCAAAGAAGAGGTTGGAGAAGGAGAAGATGCATACTCGTG  295
            ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  269  TGAACAAGATGATCCAAGACGCAGAGAAGAAGTTGGAGAAGGAGAAGATGCATACTCGTG  328

Query  296  CAATGAAACTTGGGTTAATGGCTGCGTCTAATGATCTAATCACCGATACTGATTGTTCGG  355
            | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  329  CGATGAAACTTGGGTTAATGGCTGGGTCTAATGATCTAATCACCGATACTGATTGTTCGG  388

Query  356  AGGAACTGGCCAAAGCGGCCGATGTGGTTGATAAGAAGCACAAAGCCATCATAGAGAGAA  415
            |||||||||||| ||| || ||||||||||||||||||| ||||||||||| ||||||||
Sbjct  389  AGGAACTGGCCAGAGCAGCTGATGTGGTTGATAAGAAGCTCAAAGCCATCAGAGAGAGAA  448

Query  416  TCAAGGCTGTAAAAGCAGGAGCACCAATCCTTAAGAGAGAGTAGGATG-T-TTT-CAAAT  472
            ||||||||||  ||||||||||||||||| | |||||||| ||||||| | ||| |||||
Sbjct  449  TCAAGGCTGTTGAAGCAGGAGCACCAATCATCAAGAGAGACTAGGATGATGTTTTCAAAT  508

Query  473  AATATT-TTATC-TTGTTTATTTCATGCTTTTTAATTGTTTTCACATTAAGATGGTTTGC  530
            ||  || ||||| || ||||||||||| ||||||||| |||||| ||||||||||||| |
Sbjct  509  AAC-TTCTTATCATT-TTTATTTCATGGTTTTTAATTATTTTCAGATTAAGATGGTTT-C  565

Query  531  TTTGGATTGATGATGTTAAAAATTATGTTCTATGATTTGCTTTTGCACTCTTCATCAGAA  590
               | ||||||| |||| ||| || ||||| ||||||||||||||||||||  |   |||
Sbjct  566  ---G-ATTGATGGTGTTTAAAGTTCTGTTCAATGATTTGCTTTTGCACTCT--AG--GAA  617

Query  591  GGATTAGGATCGAATGATATGAATCTCTTTGGCCTTTGTGTGGTGTAATATGATATGTTC  650
            |||||||||  |||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct  618  GGATTAGGA--GAATGATATGAATCTCTTTGGCCTTTGTATGGTGTAATATGATCTTTTC  675

Query  651  GGTTTATGACCAGATTTGTTTTATATTTT-GGAAGATTTTCTCCCTTATA  699
             |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  676  AGTTTATGACCAGATTTGTTTTATATTTTAGGAAGATTTTCTCCCTTATA  725



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35113668753


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5