BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472499
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22600.1 | Symbols: | Late embryogenesis abundant protein (... 1506 0.0
> AT1G22600.1 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr1:7987141-7989217 REVERSE LENGTH=1355
Length=1355
Score = 1506 bits (815), Expect = 0.0
Identities = 1093/1223 (89%), Gaps = 36/1223 (3%)
Strand=Plus/Plus
Query 1 GAGTCAGCGACACGAAGTAACAAGT-aaaaatgaaaaaaCTATTGGCCTTGTGTCTTGTC 59
|||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct 1 GAGTCAGCGACACGAAGTAACATGTAAAAAATGACAAAACTATTGGCCTTGTCTCTTGTG 60
Query 60 TTGAGTACGTTATTTTCGA-TGGGTCACTGCGCGGTTTCGGAGGGTGACATCATCGTGAA 118
|||||| |||||||| | | |||| |||||| ||| ||| |||| ||||||||||||||
Sbjct 61 TTGAGTGCGTTATTTAC-AGTGGGCCACTGCACGGGTTCTGAGGATGACATCATCGTGAG 119
Query 119 AGATGGTCACCGCGTTGTTGTGGTGGAGTACGACGGAGACGTCGAAACCAACACTAGAGT 178
||| || ||||| ||||||||||||||||||||| |||||| |||||| |||||||||||
Sbjct 120 AGACGGCCACCGTGTTGTTGTGGTGGAGTACGACAGAGACGGCGAAACAAACACTAGAGT 179
Query 179 CTTGATTTCACCTCCGGgaaaagaag-a-a-gagaagagaagagacgaaggggaagtgtt 235
|||||||||||||||||| ||||||| | | ||||||| ||||||||||| ||||||||
Sbjct 180 CTTGATTTCACCTCCGGGGAAAGAAGTAGATCAGAAGAGCAGAGACGAAGGAGAAGTGTT 239
Query 236 tggaaatgagaagaaagaaaCGGCGTCGTCTCTTCCAGAAGAGGAGGAGCGTGAACACCA 295
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 240 TGGAAATGAGAAGAGAGAAACGGCGTCGTCTCTTCCCGAAGAAGAGGAGCGTGAACACCA 299
Query 296 CGCGTCGCCAGGGGAACTTATATGCGATGCGATCGGTAAGTGTAAGCACAAGATGGCGAC 355
|||| ||||||||||||||||||||||||| || |||||||||||||||||| ||| |||
Sbjct 300 CGCGACGCCAGGGGAACTTATATGCGATGCAATTGGTAAGTGTAAGCACAAGCTGGGGAC 359
Query 356 TGTGTTAGGGAGAGTCAAGGATCGAACGGCTAGTGATCTTT-C--CG-AA-G--AG-AA- 406
|||||||||||||||||| |||||||||||||||||||||| | || || | | ||
Sbjct 360 TGTGTTAGGGAGAGTCAAAGATCGAACGGCTAGTGATCTTTCCGACGAAACGCCTGAAAT 419
Query 407 GA---TAGGACGTGAGGCACGTGACGTGGAAGAAAAGGTCTCAGGGACAGCACATGAAGC 463
|| | | ||||||||||| ||| |||||||| |||||||| ||| ||| | ||||||
Sbjct 420 GACGGTCGCACGTGAGGCACTTGAAGTGGAAGAGAAGGTCTCCTGGAAAGCCCGTGAAGC 479
Query 464 TA-AGGAAACGGTGAAGGAAAGGGCCACAAAGAAAGCTCATAGGGTCCAAAAAGTTTTGG 522
|| ||||| ||| || || |||||||||||||| |||||||||||||||||||||||||
Sbjct 480 TAGGGGAAA-GGTAAACGAGAGGGCCACAAAGAAGGCTCATAGGGTCCAAAAAGTTTTGG 538
Query 523 AGAATTCG-A-AGGTCGCGGTGCGGGGGATAGGGACGGCGGTTGCGGCGGCTCTGGGGCT 580
|||| | | || ||||||||||||||||||| |||| ||||||| |||| ||||||||
Sbjct 539 AGAA--GGTACAGATCGCGGTGCGGGGGATAGGAACGGTGGTTGCGACGGCGCTGGGGCT 596
Query 581 GACGAAGATCGGGAGCGTGGTGGGAATTGTTGGGATCGCGGCAGCGTATGGGATGTGCGT 640
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 597 GACGAAGATCGGGAGTGTGGTGGGAATTGTCGGGATCGCGGCGGCGTATGGGATGTGCGT 656
Query 641 GTGGGTGACGTTCGTGTCGGGCTACGTGTTGGCTTCGGTGCTTGGGGAGCAGCAATTCGG 700
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 GTGGGTGACGTTTGTGTCGGGCTACGTGTTGGCTTCGGTTCTTGGGGAGCAGCAATTCGG 716
Query 701 TGTGGTGCAGAGCAAGATGTATCCGGTGTACTTCAAGGCAGTCACTGTAGGGATTTTGGT 760
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 TGTGGTGCAGAGCAAGATGTATCCGGTGTACTTCAAGGCAGTCTCTGTAGGGATTTTGGT 776
Query 761 AGGGTTGTTAGGACACGTCATCAG-CCGGCGCCGGAAGGTTTTTACCGATGCCGTGGATA 819
|||||||||||||||||||| || ||| ||||||||||||||||||||||| |||||||
Sbjct 777 TGGGTTGTTAGGACACGTCAT-AGGCCGACGCCGGAAGGTTTTTACCGATGCGGTGGATA 835
Query 820 TGTGGCAAGCCGTTAACCTCTTGGCCTCGATCTTGATGGTCGAAGCTAATGCGTCATTTG 879
|||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 836 TGTGGCAATCCGTTAACCTCTTGTCCTCTATCTTGATGGTCGAAGCTAATGCGTCATTTG 895
Query 880 TTGACCCACGAGCCACCAAGGCAATGTTTGAGCTGATAAAAGCTGAAAAGGAAGAAGGAA 939
|| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 896 TTTACACACGAGCCACCAAGGCCATGTTTGAGCTGATAAAAGCTGAAAAGGAAGATGGAA 955
Query 940 GAGGACTTGATACGTCAGAG-A--CACAGTCTAGTGAAACAGCAGCTCGAACCAGAGGTA 996
||||| |||| |||||||| | |||||||||||||| | || | |||||||||||| |
Sbjct 956 GAGGATTTGACACGTCAGACCAGTCACAGTCTAGTGAATCTGCCGGTCGAACCAGAGGAA 1015
Query 997 AGAAGAAGGTTACAGAGAAGATGGATCAGGATGCGGTGAAGCAGAGACTGACAAATCTGA 1056
||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||| ||||
Sbjct 1016 AGAAGAAGGTTACAGAGAAGACGGATGAGGATGTGGTTAAGCAGAGACTGACAAAGCTGA 1075
Query 1057 GCGAGAGGATGTATAGGTTAAATGCGTACTCGTCGCGGCTAAATTTACTAACTCTGATGT 1116
||||||||||| || ||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1076 GCGAGAGGATGCGTAAGTTAAATGCGTACTCTTCGCGGCTAAATTTACTTACTCTCATGT 1135
Query 1117 CTCTTACTTGGCACTTTGTGTATCTCGGCGATCGACTTAGCCTTACTTGTTGACTGTTGA 1176
|||| ||||||||||||||||| || ||| | ||||||||||||||||||||| | |
Sbjct 1136 CTCTCACTTGGCACTTTGTGTACCTTGGCTACCGACTTAGCCTTACTTGTTGA--G--G- 1190
Query 1177 GGGATCAAGCCACTGATAGTTTA 1199
| ||||||||||||||| ||||
Sbjct 1191 G--ATCAAGCCACTGATACTTTA 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5