BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472503
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22640.1 | Symbols: ATMYB3, MYB3 | myb domain protein 3 | ch... 1421 0.0
AT4G09460.1 | Symbols: AtMYB6, MYB6 | myb domain protein 6 | ch... 403 1e-111
AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein... 292 3e-78
AT4G34990.1 | Symbols: AtMYB32, MYB32 | myb domain protein 32 |... 222 4e-57
AT5G15310.1 | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain pro... 106 5e-22
> AT1G22640.1 | Symbols: ATMYB3, MYB3 | myb domain protein 3 |
chr1:8006195-8007428 FORWARD LENGTH=1077
Length=1077
Score = 1421 bits (769), Expect = 0.0
Identities = 931/1003 (93%), Gaps = 35/1003 (3%)
Strand=Plus/Plus
Query 1 CTACAGGAACTCTCTTCCTT-C-aaaaaaaTTCCTC-CAAatacat--acatacac--at 53
|||||||||||||||||||| | |||||||| | | | | | | | |||||| |
Sbjct 1 CTACAGGAACTCTCTTCCTTGCAAAAAAAATAAAACACTATTTCCTCCAAATACACGTAG 60
Query 54 agagatacatacat--atataGAGATC-A-AAAGATGGGAAGATCACCATGCTGCGAGAA 109
||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 61 AGAGATACATATATACATATAGAGATCAACAAAGATGGGAAGATCACCATGCTGCGAGAA 120
Query 110 AGCTCACATGAACAAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTCGTTGATTACAT 169
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 AGCTCACATGAACAAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTTGTTGATTACAT 180
Query 170 CCGTAAACACGGTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCCGGATTACAGAGATG 229
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 181 CCGTAAACACGGTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCTGGATTACAAAGATG 240
Query 230 TGGTAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAA 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGTAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAA 300
Query 290 TTTCACTGAAGAAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTTGGTAACAAATG 349
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TTTTACTGAAGAAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTCGGTAACAAATG 360
Query 350 GTCTTTAATAGCTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCTTTAATAGCTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAA 420
Query 410 CACTCATATCAAGAGGAAGCTTCTTAGCCGTGGGATTGATCCAAACACTCATCGTCTGAT 469
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 421 CACTCATATCAAGAGGAAGCTTCTCAGCCGTGGGATTGATCCAAACTCTCACCGTCTGAT 480
Query 470 CAACGAATCGGCAGTAGTGTCTCCGTCGTCTCTTCAAAACGATGTCGTTGAGACTTTAAA 529
||||||||| | || ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 481 CAACGAATC--C-GTCGTGTCTCCGTCGTCTCTTCAAAACGATGTCGTTGAGACTATACA 537
Query 530 TCTTGATTT-TGCCGGACAGGTTAAACCGGAACCGGTACGGGAAGAGATTGGT--GGTAT 586
||||||||| | | |||| |||||||||||||||||| || |||||||||||| ||| |
Sbjct 538 TCTTGATTTCT-CTGGACCGGTTAAACCGGAACCGGTGCGTGAAGAGATTGGTATGGT-T 595
Query 587 TAATAATTGT-ACGAGTAGTGGAACGACGTCGGAGAAGGATTATGGGAACGAGGAAGATT 645
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 -AATAATTGTGA-GAGTAGTGGAACGACGTCGGAGAAGGATTATGGGAACGAGGAAGATT 653
Query 646 GGGTGATGAATTTGGAACTCTCCGTTGGACCGAGTTATCGGTACGAGTCCACTCGGAAAG 705
||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 654 GGGTGTTGAATTTGGAACTCTCTGTTGGACCGAGTTATCGGTACGAGTCGACTCGGAAAG 713
Query 706 TGAGTGTTGTTGACTCGGCTGAGTCGACTCGACGGTGGGGATCCGAGTTGTTTAGGA-CT 764
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct 714 TGAGTGTTGTTGACTCGGCTGAGTCGACTCGACGGTGGGGTTCCGAGTTGTTT-GGAGCT 772
Query 765 CA-GAG--TGATGCGGTGTGTTTGTGTTGTCGGATTGGGTTGTTTCATAATGAGTCGTGT 821
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 773 CATGAGAGTGATGCGGTGTGTTTGTGTTGTCGGATTGGGTTGTTTCGTAATGAGTCGTGT 832
Query 822 CGGAATTGTCGGGGTTCTGATGTTAGAACTCATTAGAGAGTC----GAGAATTCTTTAGG 877
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 833 CGGAATTGTCGGGTTTCTGATGTTAGAACTCATTAGAGAGTCAATCGAGAATTCTTTAGG 892
Query 878 AATCTTTTTATATATTTAGATTGTTAATTGTGCTTCtttttttCTTTCACATTTGTTATG 937
||||||||||||||||||||| || ||||||| || ||||||| || |||||||||||||
Sbjct 893 AATCTTTTTATATATTTAGATCGTCAATTGTGTTT-TTTTTTTGTT-CACATTTGTTATG 950
Query 938 TAACGCATCAAGTAAGAAACTAGGATAATTATTTGATGGCAAA 980
|||| ||||||||||||||||| |||||||||||||||||||
Sbjct 951 TAAC--ATCAAGTAAGAAACTAGCATAATTATTTGATGGCAAA 991
> AT4G09460.1 | Symbols: AtMYB6, MYB6 | myb domain protein 6 |
chr4:5992966-5994258 FORWARD LENGTH=984
Length=984
Score = 403 bits (218), Expect = 1e-111
Identities = 337/396 (85%), Gaps = 2/396 (1%)
Strand=Plus/Plus
Query 84 ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAA 143
||||||||||| || || || || |||||||||| ||||||||||||||||||||||||
Sbjct 54 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 113
Query 144 GAAGATCAGCTTCTCGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCTCTC 203
|||||||| | |||||| ||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 114 GAAGATCAACGTCTCGTAGATTATATCCGTAATCACGGTGAAGGTTGTTGGCGTTCTCTT 173
Query 204 CCTCGCGCCGCCGGATTACAGAGATGTGGTAAGAGTTGTAGATTGAGATGGATGAATTAT 263
||| |||| ||||| | | |||||||| |||||||||||||||||||| |||||
Sbjct 174 CCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTAC 233
Query 264 CTAAGACCAGATCTCAAAAGAGGCAATTTCACTGAAGAAGAAGATGAACTCATCATCAAG 323
|| | || ||||| ||| | || ||||| ||||| || |||||| || ||||||||||
Sbjct 234 CTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGATGAAGATCAAATCATCATCAAA 293
Query 324 CTCCATAGCTTGCTTGGTAACAAATGGTCTTTAATAGCTGGGAGATTACCAGGAAGAACA 383
||||||||||| || |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 294 CTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACA 353
Query 384 GATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTTAGCCGTGGG 443
|||||||| || ||||| ||||||||||||||||| ||||||||||||||||| | ||
Sbjct 354 GATAACGAAATAAAGAATTATTGGAACACTCATATTAAGAGGAAGCTTCTTAGTCACGGT 413
Query 444 ATTGATCCA-AACACTCATCGTCTGATCAACGAATC 478
||||||||| || |||||||||| ||| ||||||||
Sbjct 414 ATTGATCCACAA-ACTCATCGTCAGATTAACGAATC 448
> AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein
7 | chr2:7255529-7256580 REVERSE LENGTH=980
Length=980
Score = 292 bits (158), Expect = 3e-78
Identities = 321/399 (80%), Gaps = 14/399 (4%)
Strand=Plus/Plus
Query 84 ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAA 143
||||||||||| || ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 31 ATGGGAAGATCTCCTTGCTGCGAGAAAGAACACATGAACAAAGGTGCTTGGACTAAAGAA 90
Query 144 GAAGATCAGCTTCTCGT-TGATTACATC-CGTAAACACGGTGAAGGTTGCTGGCGATCTC 201
|||||| || || || | ||||||| || |||||||||||||| ||||||||||
Sbjct 91 GAAGATGAGAGACTAGTCT-CTTACATCAAGT-CTCACGGTGAAGGTTGTTGGCGATCTC 148
Query 202 TCCCTCGCGCCGCCGGAT-TACAGAGATGTGGTAAGAGTTGTAGAT-TGAGATGGATGAA 259
| ||| | ||||| || | | | | || ||||| || || | | | | ||||| ||
Sbjct 149 TTCCTAGAGCCGCTGG-TCTCCTTCGCTGCGGTAAAAGCTGCCG-TCTTCGGTGGATTAA 206
Query 260 TTATCTAAGACCAGATCTCAAAAGAGGCAA-TTTCACTGAAGAAGAAGATGAACTCATCA 318
||||| |||| |||||||||||||| || ||| || | || ||||||||||| ||||
Sbjct 207 CTATCTCCGACCTGATCTCAAAAGAGGAAACTTT-ACACATGATGAAGATGAACTTATCA 265
Query 319 TCAAGCTCCATAGCTTGCTTGGTAACAAATGGTCTTTAATAGCTGG-GAGATTACCAGGA 377
||||||| |||||| | || || ||||| |||||||| || || || ||||||||| |||
Sbjct 266 TCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGC-GGCGAGATTACCTGGA 324
Query 378 AGAACAGATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTT-AG 436
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||| || ||
Sbjct 325 AGAACAGATAACGAGATCAAGAACTACTGGAACACACATATAAAGAGGAAGCTT-TTGAG 383
Query 437 CCGTGGGATTGATCCAAACACTCATCGTCTGATCAACGA 475
| |||||||||||| ||||||| | |||||||||
Sbjct 384 CAAAGGGATTGATCCAGCCACTCATAGAGGGATCAACGA 422
> AT4G34990.1 | Symbols: AtMYB32, MYB32 | myb domain protein 32
| chr4:16661329-16662367 REVERSE LENGTH=944
Length=944
Score = 222 bits (120), Expect = 4e-57
Identities = 321/413 (78%), Gaps = 34/413 (8%)
Strand=Plus/Plus
Query 80 AAAGATGGGAAGATCACCATGCTGCGAGAAAG-CTCACATGAACAAAGGAGCTTGGACT- 137
|||||||||||| || || ||||| ||||||| | |||| ||||||||||||||||||
Sbjct 75 AAAGATGGGAAGGTCTCCTTGCTGTGAGAAAGAC-CACACAAACAAAGGAGCTTGGACTA 133
Query 138 A--AAGAAGAAGATCAGCTTC-TCGTTGATTACATCCGTAAA---CACGGTGAAGGTTGC 191
| ||||||| ||| ||| || || | |||||| | ||| ||||||||||||||
Sbjct 134 AGGAAGAAGACGATAAGC-TCATC--T-CTTACAT-C--AAAGCTCACGGTGAAGGTTGT 186
Query 192 TGGCGATCTCTCCCTCGCGCCGCCGGAT-TACAGA-GATGTGGTAAGAGTTGTAGAT-TG 248
||||| ||||| ||| | ||||||| | | || | | || || || || ||| | | |
Sbjct 187 TGGCGTTCTCTTCCTAGATCCGCCGG-TCTTCA-ACGTTGCGGAAAAAGCTGTCG-TCTC 243
Query 249 AGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAATTTCACTGAAGAAGAAGAT 308
||||||| || ||||| |||| |||||||| || || || ||||| |||||||||
Sbjct 244 CGATGGATTAACTATCTCCGACCTGATCTCAAGAGGGGTAACTTCACCCTCGAAGAAGAT 303
Query 309 GAACTCATCATCAAGCTCCATAG-CTTGCTTGGTAACAAATGGTCT-TTAATAGCTG-GG 365
|| ||||||||||| || ||||| ||| || |||||||| |||||| || || || | |
Sbjct 304 GATCTCATCATCAAACTACATAGCCTT-CTCGGTAACAAGTGGTCTCTT-ATTGC-GACG 360
Query 366 AGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGG 425
||||||||||||||||||||||||||||| ||||| || |||||||| ||| | ||||||
Sbjct 361 AGATTACCAGGAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAGAGG 420
Query 426 AAGCTTCTTA-GCCGTGGGATTGATCCAAAC-ACTCATCGTC-TGATCAACGA 475
||||| ||| | ||||||||||| | |||||||| | | ||||||||
Sbjct 421 AAGCTA-TTAAGAAAAGGGATTGATCCGG-CGACTCATCGACCT-ATCAACGA 470
> AT5G15310.1 | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain protein
16 | chr5:4974671-4976227 FORWARD LENGTH=1325
Length=1325
Score = 106 bits (57), Expect = 5e-22
Identities = 161/208 (77%), Gaps = 20/208 (10%)
Strand=Plus/Plus
Query 226 GATGTGGTAAGAGTTGTAGATTGAGATGGA-TGAATTATCTAAGACCAGATC-TCAAAAG 283
|||| || |||||||||||| | ||||||| | || || |||||||| || | |||||||
Sbjct 366 GATGCGGAAAGAGTTGTAGACTAAGATGGACT-AACTACCTAAGACCTGA-CATCAAAAG 423
Query 284 AGGCAATTTC-AC-T-GAAGAAGAAGATGAACTCATCAT-CAAGCTCCATAGCT-TGCTT 338
|||||| ||| || | |||||||| | ||| ||| || ||| |||||| ||| || ||
Sbjct 424 AGGCAAATTCAACTTACAAGAAGAACA--AAC-CATTATCCAA-CTCCAT-GCTCTG-TT 477
Query 339 -GGTAACAAATGGTCTTTAATAGCTGGGAGA-TTACC-AGGAAGAACAGATAACGAGATC 395
|| |||| |||||| || ||| | || || | | |||||||| |||||||||
Sbjct 478 AGGAAACAGATGGTCAGCGATTGCT-ACTCATTTGCCAAAG-AGAACAGACAACGAGATC 535
Query 396 AAGAACTATTGGAACACTCATATCAAGA 423
||||||||||||||||||||| | ||||
Sbjct 536 AAGAACTATTGGAACACTCATTTGAAGA 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5