BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472504
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22650.1 | Symbols: | Plant neutral invertase family protei... 2929 0.0
> AT1G22650.1 | Symbols: | Plant neutral invertase family protein
| chr1:8013382-8015991 REVERSE LENGTH=1869
Length=1869
Score = 2929 bits (1586), Expect = 0.0
Identities = 1783/1877 (95%), Gaps = 18/1877 (1%)
Strand=Plus/Plus
Query 1 CTTCTTTCTATCTCTATCACA--TTTCTCCACCGGCTGATTTGTTTGCCCGGAGATTACC 58
||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 4 CTTCTTTCTATATTTATCACATTTTTCTTCACCGGCTGATTTGTTTGCCCGGAGATTATC 63
Query 59 TCTCCGTCGTAATTAAGGTCCGTTTA-TGAGAG-AACACAAAGTTAAAGAATCCTTATGG 116
||||||||||||||||| | | | || | || ||||||||||||||||||||| ||||
Sbjct 64 TCTCCGTCGTAATTAAGAT-C-TATACACACAGAAACACAAAGTTAAAGAATCCTCATGG 121
Query 117 AAGGAGTAAACTCTTCAAGCTCTATATCCGACCTAGACGACTTGGCTCGGTTACTTGACC 176
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 122 AAGGAGTAAACTCTTCAAGCTCTATATCCGACCTAGACGAATTGGCTCGGTTACTTGACC 181
Query 177 GGCCGAGGCTAAATATTGAACGGAAAAGATCGTTTGACGAGAGGTCGTTCAGCGAAATGG 236
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 182 GGCCGAGGGTAAATATTGAACGGAAAAGATCGTTTGACGAGAGGTCCTTCAGCGAAATGG 241
Query 237 GAATCTTCGACAACGTTAATTCTCCCGGAGGATGGGAAACTCCGGTATCTTCGGCTAGAA 296
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 242 GAATCTTCGACAACGTTAATTCTCCCGGAGGATGGGAAACTCCGGTGTCTTCGGCTAGAA 301
Query 297 ACTCGTTTGAGCCACATCCTATGGTTGCAGAGGCTTGGGATGCTTTGAGACGATCATTGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ACTCGTTTGAGCCACATCCTATGGTTGCAGAGGCTTGGGATGCTTTGAGACGATCATTGG 361
Query 357 TTTACTTTCGTGGCCAACCGGTTGGTACTATCGCTGCTTATGACCATGCTTCTGAAGAAG 416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 362 TTTACTTTCGTGGCCAACCGGTTGGTACTATCGCTGCTTATGACCATGCTACTGAGGAAG 421
Query 417 TCTTGAACTATGATCAGGTTTTCGTAAGAGACTTTGTTCCAAGTGCACTAGCTTTTCTCA 476
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCTTGAATTATGATCAGGTTTTCGTAAGAGACTTTGTTCCAAGTGCACTAGCTTTTCTCA 481
Query 477 TGAATGGAGAGCCAGACATAGTTAAGAACTTTCTCCTCAAGACAATTCAAATCCAAGGAA 536
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 TGAACGGAGAACCAGACATAGTTAAAAACTTTCTCCTCAAGACAATTCAAATCCAAGGAA 541
Query 537 GGGAAAAAAGAATAGACCGGTTCAAGCTCGGTGAAGGCGCAATGCCGGCTAGCTTCAAGG 596
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 542 GGGAGAAAAGAATAGACCGATTCAAGCTCGGTGAAGGCGCAATGCCGGCTAGTTTCAAGG 601
Query 597 TCATTCACGACCCGATCAAGAAAACCGACACTATCA-TCGCTGACTTTGGCGAGAGCGCG 655
|||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||
Sbjct 602 TCATTCACGACCCGATCAAGGAAACCGACTCTATCAAT-GCTGACTTTGGCGAGAGCGCG 660
Query 656 ATTGGAAGAGTGGCTCCGGTTGACTCAGGTTTCTGGTGGATCATTCTCCTTAGAGCCTAC 715
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTGGAAGAGTGGCTCCGGTGGACTCAGGTTTCTGGTGGATCATTCTCCTTAGAGCCTAC 720
Query 716 ACAAAATCCACCGGAGACACTTCTCTAGCTGAAACACCTGAATGTCAAAAGGGAATGAGA 775
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 ACAAAATCCACCGGAGACACTTCTCTAGCTGAAACATCTGAATGTCAAAAGGGAATGAGA 780
Query 776 CTCATTCTCTCTCTTTGTCTCTCTGAAGGTTTCGATACTTTCCCTACATTACTTTGTGCT 835
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 781 CTCATTCTCTCTCTTTGTCTCTCCGAAGGTTTCGATACTTTCCCTACCTTACTTTGTGCT 840
Query 836 GATGGCTGCTCCATGGTCGATCGAAGAATGGGGGTTTACGGGTACCCGATAGAGATCCAA 895
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 GATGGCTGCTCCATGATCGATCGAAGAATGGGGGTTTACGGGTATCCGATAGAGATCCAA 900
Query 896 GCTCTCTTCTTCATGGCTCTTCGATCAGCAATGTCGATGCTAAAACACGACGCGGAGGGT 955
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 901 GCTCTCTTCTTCATGGCTCTTAGATCAGCAATGTCGATGCTAAAGCACGACGCGGAAGGT 960
Query 956 AAAGAGTTCATGGAGAGGATAGTGAAGCGGCTACACGCGCTTAGCTTCCACATGAGAAGC 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAGAGTTCATGGAGAGGATAGTGAAGCGGCTACACGCGCTTAGCTTCCACATGAGAAGT 1020
Query 1016 TATTTCTGGCTCGATTTTCAGCAGCTCAACGACATTTACCGTTATAAAACAGAGGAGTAC 1075
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1021 TATTTCTGGCTCGATTTTCAGCAGCTCAACGACATTTACCGTTACAAAACAGAAGAGTAC 1080
Query 1076 TCGCACACAGCGGTCAACAAGTTCAACGTCATCCCTGACTCGATCCCTGAGTGGGTCTTC 1135
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 TCGCACACAGCGGTTAACAAGTTCAACGTTATCCCTGACTCGATCCCTGAGTGGGTCTTC 1140
Query 1136 GATTTCATGCCTCTACGCGGCGGTTACTTCATAGGAAACGTTAGTCCAGCTCGTATGGAT 1195
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1141 GATTTCATGCCTCTACGTGGCGGTTACTTTATAGGAAACGTTAGTCCAGCTCGTATGGAT 1200
Query 1196 TTCAGGTGGTTTGCTCTTGGCAACTGTGTAGCGATCCTTGCTTCTTTAGCCACGCCTGAG 1255
|| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 TTTAGGTGGTTCGCTCTAGGCAACTGCGTAGCGATCCTTGCTTCTTTAGCCACGCCTGAG 1260
Query 1256 CAGTCGGCTGCGATCATGGATTTGATAGAGGAACGGTGGGAGGAGTTGGTCGGAGAGATG 1315
||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CAGTCGGCTTCAATCATGGACTTGATAGAGGAACGGTGGGAGGAGTTGGTCGGAGAGATG 1320
Query 1316 CCGGTTAAGATTTGTCATCCAGCGATCGAGAGCCACGAGTGGCGGATCGTTACCGGTTGT 1375
|||||||| ||||||||||| || ||||||||||| |||||| |||| |||||||||||
Sbjct 1321 CCGGTTAAAATTTGTCATCCGGCAATCGAGAGCCATGAGTGGAGGATTGTTACCGGTTGC 1380
Query 1376 GACCCTAAGAATACTCTTTGGAGTTACCATAACGGTGGTTCTTGGCCAGTGCTT-TTGTG 1434
|||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1381 GACCCTAAGAATACTCGTTGGAGTTACCATAACGGTGGTTCTTGGCCAGTA-TTGTTGTG 1439
Query 1435 GCTATTAACAGCTGCGTGCATAAAGACGGGACGGCCACAAATAGCAAGACGGGCCATAGA 1494
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCTATTAACAGCTGCATGCATAAAGACGGGACGGCCACAAATAGCAAGACGGGCCATAGA 1499
Query 1495 TCTTGCCGAGGCACGGCTATTGAAGGATGGTTGGCCGGAGTACTACGACGGAAAATCAGG 1554
|| || || |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1500 CCTGGCGGAAGCACGGCTGTTGAAGGATGGTTGGCCGGAGTACTACGACGGGAAATCAGG 1559
Query 1555 AAGGTTCATCGGAAAACAGGCGAGGAAGTTTCAGACATGGTCTATCGCAGGTTACTTGGT 1614
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1560 AAGGTTCATCGGAAAACAGGCGAGGAAGTTTCAGACATGGTCTATCGCCGGTTACTTGGT 1619
Query 1615 CGCCAAGATGTTGTTGGAAGATCCTTCTCATCTTGGAATGATCTCATTGGAAGAAGACAA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CGCCAAGATGTTGTTGGAAGATCCTTCTCATCTTGGAATGATCTCATTGGAAGAAGACAA 1679
Query 1675 ACAGACCAAACCTGTCATTAAGAGATCTTATTCTTGGACTTGATAATTTGTTGTCAATTC 1734
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ACAGACTAAACCTGTCATTAAGAGATCTTATTCTTGGACTTGATAATTTGTTGTCAATTC 1739
Query 1735 ATTTGAGAAAATCAGGCTAAAATTTGTTAGTGTCTAAATTTTGTTTTACAAGTTAACGCA 1794
|||||||| | |||||||||||||| | | |||||||||||| |||||| || |||
Sbjct 1740 TTTTGAGAAGAGCAGGCTAAAATTTG--A-T--CTAAATTTTGTTACACAAGTCAATGCA 1794
Query 1795 TCTTGTATTATTATTGTTTTCCTTAGTGTGGAGGAGTAGTGGGATAATTGATAACCTCTT 1854
| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct 1795 TTTTGTATTATTATTGTTTCCCTTAGTGTGGAG---TAGTGGGATTATTGATAACCTCTT 1851
Query 1855 TGTAGACGATTTTTTCT 1871
|||||||||||||||||
Sbjct 1852 TGTAGACGATTTTTTCT 1868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92620005525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5