BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472509

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22690.1 | Symbols:  | Gibberellin-regulated family protein ...   676    0.0  


> AT1G22690.1 | Symbols:  | Gibberellin-regulated family protein 
| chr1:8027294-8028125 FORWARD LENGTH=558
Length=558

 Score =  676 bits (366),  Expect = 0.0
 Identities = 438/469 (93%), Gaps = 20/469 (4%)
 Strand=Plus/Plus

Query  1    CAAGAAATATGAAGAAGATGAATGTGGTGGCTTTTGTTATGCTGATCATCTCTCTTCTCC  60
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct  27   CAAGAAATATGAAGAAGATGAATGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTC  86

Query  61   TGCTTTCTCAGGCACTTGCAGAGTTGTCTTCATCCAGCAACAATGAAACTTCCTCTGTTT  120
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  87   TGCTTTCTCAGGTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTT  146

Query  121  CTCAGACGAATGACGAGAACCAAACTGCGGCGTTTAAGAGAACATACCACCATCGTCCAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  147  CTCAGACGAATGACGAGAACCAAACTGCGGCGTTTAAGAGAACATACCACCATCGTCCAA  206

Query  181  GAATCAATTGTGGGCATGCATGCGCAAGGAGATGCAGCAAGACATCGAGGAAGAAAGTGT  240
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  207  GAATCAATTGTGGGCATGCATGCGCAAGGAGATGCAGTAAGACATCGAGGAAGAAAGTTT  266

Query  241  GTCACAGAGCCTGTGGAAGTTGTTGTGCCAAGTGTCAGTGTGTGCCGCCGGGAACCTCCG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  267  GTCACAGAGCCTGTGGAAGTTGTTGTGCCAAGTGTCAGTGTGTGCCGCCGGGAACCTCCG  326

Query  301  GCAACACAGCAGCATGTCCTTGCTACGCCAATATCCGTACACATGGCAATAAACTCAAGT  360
            ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  327  GCAACACAGCATCATGTCCTTGCTACGCCAGTATCCGTACACATGGCAATAAACTCAAAT  386

Query  361  GTCCTTAAAAGACTTCTC-T--C--A--T-----CT--T-TT--GATTATGTTTCTTCGT  403
            |||||||||||||||||| |  |  |  |     ||  | ||  |||||||||||||| |
Sbjct  387  GTCCTTAAAAGACTTCTCATTTCTCAACTATAGTCTCATCTTCTGATTATGTTTCTTCTT  446

Query  404  TTGTTATGTTGCATGTGTGATGTGTGAGCTTATTTCCATTATGTTGATT  452
            ||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct  447  TTGTTATGTTGCATGTGTGATGTGTGAGCTTATT---ATTATGTTGATT  492


 Score = 62.1 bits (33),  Expect = 5e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  449  GATTCCGAATAATAAGATGAGTGATTTTATTGG  481
            |||||||||||||||||||||||||||||||||
Sbjct  524  GATTCCGAATAATAAGATGAGTGATTTTATTGG  556



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5