BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472512
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22700.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1480 0.0
> AT1G22700.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:8028158-8029962 REVERSE LENGTH=1155
Length=1155
Score = 1480 bits (801), Expect = 0.0
Identities = 1015/1110 (91%), Gaps = 47/1110 (4%)
Strand=Plus/Plus
Query 6 TCTCTTGAG--CGCACACAC--ACAAGACTCCT-CTCACAGAACGATTTCA-ATTTCATC 59
||||||||| | ||||||| |||||||| || ||||||||||||||| | |||| |||
Sbjct 1 TCTCTTGAGCACACACACACATACAAGACT-CTCCTCACAGAACGATTT-AGATTTAATC 58
Query 60 GGAAAAAAG-T---TCAGTGACCCTTATGTTCGAATCGAACATGCTTCTTCATACACTAt 115
|| |||||| | |||||||| || |||||||||||||||||| ||||||| |||||||
Sbjct 59 GGGAAAAAGTTCAGTCAGTGACACTAATGTTCGAATCGAACATGGTTCTTCAAACACTAT 118
Query 116 cttcttcttctcctccacttcaccgtctctatcttcaccattcccagattctcccttctt 175
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 CTTCTTCTTCTCCTCCAATTCACCGTCTCTATCTTCACCATTCTCAGATTCTCCCTTCTT 178
Query 176 ctGGGTCACCCAAG-AAGATTTCTCTTCAGATACATGGAAGGACTTTGGCCATTCGATCT 234
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTGGGTCACCC-AGCAAGATTTCTCTTCAGATACATGGAAGGACTTTGGCCATTCGATCT 237
Query 235 TTTC------A------T---GAAATTTCTGCTAGAGGTTTACCGGCTTTGAACAAAGCT 279
|||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTCATGATTATGTCTTTGCAGAAATTTCTGCTAGAGGTTTACCGGCTTTGAACAAAGCT 297
Query 280 TCCTTGAAGAAGCTACCAATCAAAGGATCCACCTTTCTGCTGGGTCAGAGCATGTTGATG 339
||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 298 TCCTTGAAGAAGCTACCAATCAAAGGATCTACCTTTCTGCTGGGGCAGAGCTTGTTGATG 357
Query 340 GTTTCTGCTTACCCACAGATGGCAGCAGCAGCAGAAATCATAAAGCCTGAACCGATTTAC 399
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTTTCTGCTCACCCACAGTTGGCAGCAGCAGCAGAAATCATAAAGCCTGAACCGATTTAC 417
Query 400 GAAGTTGGGGAGTTATTTGAACTTAGTATTCAGCTTTCTTACTTGCTGTTACTACTGGGG 459
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAAGTTGGAGAGTTATTTGAACTTAGTATTCAGCTTTCTTACTTGCTGTTACTACTGGGG 477
Query 460 TTGCTTGGAGTTGGTACTTTCTATGTGATCCGTCAAGTACTTGTACGCAGAGAACTTGAC 519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 TTGCTTGGAGTTGGTACTTTCTATGTGATCCGTCAAGTACTTGTACGCAGAGAACTAGAC 537
Query 520 CTCTCCGCTAAAGAATTGCAGGAGCAAGTTAGGAGTGGCGATGCAAGTGCAACAGAGCTC 579
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 538 CTCTCCGCTAAAGAATTGCAGGAGCAAGTAAGGAGCGGAGATGCAAGTGCAACAGAGCTC 597
Query 580 TTCGAGCTTGGTGCAGTGATGTTGCGAAGGAAATTTTATCCTGCTGCCAACAAGTTTTTG 639
|| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 598 TTTGAGCTTGGTGCAGTGATGTTGAGAAGGAAGTTTTATCCTGCAGCCAACAAGTTTTTG 657
Query 640 CAACAAGCCATCCAGAAATGGGACGGCGATGATCAAGATCTTGCCCAGGTCTATAACGCT 699
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 658 CAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGGTCTATAACGCT 717
Query 700 CTTGGAGTGAGTTATGTCCGAGAGGATAAACTCGACAAAGGAATCGCTCAGTTTGAAATG 759
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 718 CTTGGAGTGAGTTATGTACGAGAGGATAAACTTGACAAAGGAATTGCTCAGTTTGAAATG 777
Query 760 GCGGTGAAGCTGCAGCCCGGTTATGTAACGGCTTGGAACAACCTTGGGGACGCTTATGAG 819
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 778 GCGGTGAAGCTGCAACCCGGTTATGTAACAGCTTGGAACAACCTTGGGGATGCTTATGAG 837
Query 820 AAGAAAAAGGAGTTGCCTTTGGCATTGAAAGCGTTTGAAGAGGTTTTGTTGTTTGATCCG 879
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 838 AAGAAGAAGGAGTTGCCTTTGGCATTGAATGCGTTTGAAGAAGTTTTGTTGTTTGATCCA 897
Query 880 AACAATAAGGTGGCTCGGCCTCGGCGAGATGCGTTGAAGGATCGTGTGAAGCTTTATAAA 939
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 AACAATAAGGTGGCTCGGCCTCGGCGAGATGCGTTGAAGGATCGCGTGAAGCTTTATAAA 957
Query 940 GGCGTTGTCTCGGTTAAATCTAAGAAACGGTGACGGCTAAAACAAGAAGAAAACTC-GAA 998
|| ||||| | ||||| |||||||||||||||||||| |||||||| | |||||| |||
Sbjct 958 GGTGTTGTGGCTGTTAAGTCTAAGAAACGGTGACGGCTCAAACAAGATGCAAACTCTGAA 1017
Query 999 CCAAGAACCGTTGGTCT-T-T-----TTCTG---------GCTT-GGTAATATGTAAGGA 1041
||||||||||||||||| | | || || | || ||||||||||| |||
Sbjct 1018 CCAAGAACCGTTGGTCTCTCTCCCCCTTGTGTATTTTTTTGGTTTGGTAATATGTATGGA 1077
Query 1042 GATTTTGTGTTAATATGAAAATGAAACTTT 1071
||||||||||||||||||||||||||||||
Sbjct 1078 GATTTTGTGTTAATATGAAAATGAAACTTT 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5