BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472522
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22780.1 | Symbols: PFL, RPS18A, PFL1 | Ribosomal protein S1... 1061 0.0
AT4G09800.1 | Symbols: RPS18C | S18 ribosomal protein | chr4:61... 538 3e-152
> AT1G22780.1 | Symbols: PFL, RPS18A, PFL1 | Ribosomal protein
S13/S18 family | chr1:8067864-8069342 FORWARD LENGTH=764
Length=764
Score = 1061 bits (574), Expect = 0.0
Identities = 685/735 (93%), Gaps = 21/735 (3%)
Strand=Plus/Plus
Query 1 TCATATTAGGTTCGAAAACCCTAAAGGAGTTACGCCGCTTATAACAGACCTGACCTTCTT 60
|||||||||||| ||||||||| || | || |||||||||||||||||||| |||
Sbjct 1 TCATATTAGGTTGGAAAACCCT-AA--A--TATGCCGCTTATAACAGACCTGA---GCTT 52
Query 61 AACCTGTGGTGGCGCCTCCAGAGTCT-GTGAAAGAGCTTAATCCTTGTATCGCGATCTTT 119
|| ||||||||||||||||||||||| || ||||||||||||||| | |||||||||||
Sbjct 53 AAGCTGTGGTGGCGCCTCCAGAGTCTGGTAAAAGAGCTTAATCCTCCTCTCGCGATCTTT 112
Query 120 CTCGGCATCCAAAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATTTTGCGTGTGC 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 113 CTCGGCATCCAAAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATTCTGCGTGTGC 172
Query 180 TCAACACTAATGTCGATGGGAAGCAAAAGATTATGTTTGCCTTGACCTCGATCAAGGGTA 239
|||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 173 TCAATACTAATGTCGATGGGAAGCAAAAAATTATGTTTGCTTTGACCTCAATCAAGGGTA 232
Query 240 TTGGAAGGCGATTGGCCAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGG 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TTGGAAGGCGATTGGCTAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGG 292
Query 300 CTGGAGAACTAAGTGCTGCAGAAATCGACAACCTCATGACAATCGTTGCGAACCCTCGTC 359
||||||||||||||||||| || || || |||||||||||||||||||| |||||||| |
Sbjct 293 CTGGAGAACTAAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCC 352
Query 360 AGTTCAAGATCCCAGACTGG-TTCTTGAACAGGCAAAAGGATTACAAGGATGGGAAATAC 418
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 353 AGTTCAAGATCCCAGACTGGTTTCTT-AACAGACAAAAGGATTACAAGGATGGGAAATAC 411
Query 419 TCCCAAGTTGTTTCCAATGCTCTGGACATGAAGCTGAGAGATGATCTTGAGCGTCTCAAG 478
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 412 TCCCAAGTTGTTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGTCTCAAG 471
Query 479 AAGATCAGGAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCAC 538
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AAGATCAGAAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCAC 531
Query 539 ACCAAAACCACCGGACGACGTGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTAAAAAAGA 598
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct 532 ACCAAAACCACCGGACGCCGTGGAAAGACTGTTGGTGTTTCCAAGAAGCGTTAAAAA-GA 590
Query 599 GTTGGTGCTTGGTTCAATGGCTTTGCTTTGTTTT----GTATTGTT-TTTT--GCAGAAG 651
||| | ||||||||||||||||||| |||||||| |||||||| |||| |||||||
Sbjct 591 GTTTGAGCTTGGTTCAATGGCTTTGTTTTGTTTTTTTTGTATTGTTGTTTTTTGCAGAAG 650
Query 652 AGATAGTTTAAGCA-ATGTTGTTTCATCAAAAGACGGTCTTAGCTTTTACAATATATAAT 710
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGATAGTTTAAG-AGATGTTGTTTCATCAAAAGACGGTCTTAGCTTTTACAATATATAAT 709
Query 711 TGAATCCAAAAACTA 725
|||||||||||||||
Sbjct 710 TGAATCCAAAAACTA 724
> AT4G09800.1 | Symbols: RPS18C | S18 ribosomal protein | chr4:6173715-6175200
FORWARD LENGTH=799
Length=799
Score = 538 bits (291), Expect = 3e-152
Identities = 413/472 (88%), Gaps = 8/472 (2%)
Strand=Plus/Plus
Query 131 AAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATT-TTGCGTGTGCTCAACACTAA 189
||||||||||| ||||| || ||||||||||| || ||| || |||||| | || |||||
Sbjct 101 AAAATGTCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTT-CGTGTGTTGAATACTAA 159
Query 190 TGTCGATGGGAAGCAAAAGATTATGTTTG-CCTTGACCTCGATCAAGGGTATTGGAAGGC 248
||| ||||| ||||| ||||||||||||| |||| ||||| ||||| |||||||| ||||
Sbjct 160 TGTTGATGGTAAGCAGAAGATTATGTTTGCCCTT-ACCTCTATCAAAGGTATTGGTAGGC 218
Query 249 GATTGGCCAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGAGAAC 308
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 219 GATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGT 278
Query 309 TAAGTGCTGCAGAAATCGACAACCTCATGACAATCGTTGCGAACCCTCGTCAGTTCAAGA 368
|| |||||| || || || |||||||||||||||||||| ||||| |||||||||||||
Sbjct 279 TATCTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGA 338
Query 369 TCCCAGACTGGTTCTTGAACAGGCAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTG 428
||||||||||||||||||||||||| ||||||||||| ||||| || || || |||||||
Sbjct 339 TCCCAGACTGGTTCTTGAACAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTG 398
Query 429 TTTCCAATGCTCTGGACATGAAGCTGAGAGATGATCTTGAGCGTCTCAAGAAGATCAGGA 488
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 399 TCTCCAATGCTCTTGACATGAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAA 458
Query 489 ACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGT-ACGTGGACAGCACACCAAAACC 547
|||| |||||| ||||||| ||||||||||||||||| | | ||||| |||||||| ||
Sbjct 459 ACCACCGTGGTTTGAGGCATTACTGGGGTCTCCGTGTCA-GAGGACAACACACCAAGACT 517
Query 548 ACCGGACG-ACGTGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTAAAAAAGA 598
|| || || | | |||||||||||||||||||| |||||||||||| |||||
Sbjct 518 ACTGGTCGCA-GAGGAAAGACTGTTGGTGTCTCAAAGAAGCGTTAAGAAAGA 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5