BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472526
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22830.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1714 0.0
AT1G71490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 414 2e-114
> AT1G22830.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:8076573-8079091 FORWARD LENGTH=2433
Length=2433
Score = 1714 bits (928), Expect = 0.0
Identities = 1099/1180 (93%), Gaps = 17/1180 (1%)
Strand=Plus/Plus
Query 1169 TTCTGTAGCTATGATTAATGGTTTAAAGGCATGCTCACACATTGGAGCGTTACAGTGGGG 1228
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1219 TTCTGTAGCTATGATTAATGGTTTAAAGGCATGCTCACACATTGGAGCGTTAAAGTGGGG 1278
Query 1229 AAAAGTATTTCATTGCCTTGTGATCCGTAG-T-T-G---TTGCCATGAAATTGACAATGT 1282
||||||||||||||||||||||||||||| | | | || |||||| |||||||||||
Sbjct 1279 GAAAGTATTTCATTGCCTTGTGATCCGTAGTTGTAGTTTTTCCCATGATATTGACAATGT 1338
Query 1283 TCGAAATTCGTTGATTACAATGTACTCAAGATGCAGCGATCTTAGGCACGCCTTTATAGT 1342
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1339 TCGGAATTCGTTGATCACAATGTACTCAAGATGCAGTGATCTTAGGCACGCGTTTATAGT 1398
Query 1343 GTTTCAGCAGATTGAAGCAAATAGTTTGAGTACATGGAATTCTATCATTTCCGGTTATGC 1402
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1399 GTTTCAGCAGGTTGAAGCAAATAGTTTGAGTACATGGAATTCTATCATTTCCGGTTTTGC 1458
Query 1403 ACACAACGAGAGATCAGAAGAAACCTCTTTCCTGCTCAAGGAGATGTTGCTCTCTGGCTT 1462
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1459 ATACAACGAGAGATCAGAAGAAACCTCTTTCCTGCTCAAGGAGATGTTGCTCTCTGGATT 1518
Query 1463 TCACCCAAATTACATTACGCTTGCTAGCATTCTCCCTCTTTGTGCTCGGGTGGCAAACCT 1522
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1519 TCACCCAAATCACATTACGCTTGCTAGCATTCTCCCTCTTTTTGCTCGGGTGGGAAACCT 1578
Query 1523 GCAACACGGGAAAGAGTTTCACTGCTACATCCTGAGGCGCCAAAGCTACAAGGACTGTTT 1582
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1579 GCAACATGGGAAAGAGTTTCACTGCTACATCCTGAGACGCCAAAGCTACAAGGACTGTTT 1638
Query 1583 AATCCTGTGGAACTCTCTTGTCGATATGTATGCAAAATCTGGGGAAATCATAGCTGCAAA 1642
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1639 AATCCTGTGGAACTCCCTTGTCGATATGTATGCAAAATCCGGTGAAATCATAGCTGCAAA 1698
Query 1643 GCGAGTATTTGATTCGATGAGCAAGAGGGACAAAGTGACATACACTTCCTTGATAGATGG 1702
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1699 GCGAGTATTTGATTCGATGAGGAAGAGGGACAAAGTGACATACACTTCTTTGATCGATGG 1758
Query 1703 ATATGGCAGGCTGGGTAAAGGAGAAGTCTCCTTGGCATGGTTCAAGGATATGAACAGATC 1762
|||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 1759 ATATGGCAGGCTGGGTAAAGGAGAAGTCGCATTGGCATGGTTCAAGGATATGGACAGATC 1818
Query 1763 CGGTATCAAACCTGATCATGTAACTTTGGTTGCTGTTTTATCAGCTTGCAGCCATTCCAA 1822
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1819 CGGTATCAAACCTGATCATGTAACTATGGTTGCAGTTTTATCAGCTTGCAGCCATTCCAA 1878
Query 1823 TTTAGTGCATGAAGGACACAGGTTGTTTACGAAGATGGAGAC-TGGGTTTGGTATACGCC 1881
|||||||| |||||||||| |||||||||||||||||||| | || ||||||||||||||
Sbjct 1879 TTTAGTGCGTGAAGGACACTGGTTGTTTACGAAGATGGAG-CATGTGTTTGGTATACGCC 1937
Query 1882 CTCGCCTTGAACACTATTCTTGTATGGTTGATCTTTATTGCAGAGTAGGTGACCTGGCTG 1941
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 1938 TTCGCCTTGAACACTATTCTTGTATGGTTGATCTTTATTGCAGAGCAGGTTACCTGGATA 1997
Query 1942 AAGCCAGGA-AGATATTCCGCAAAATACCTTACGAGCCAACAAGTGCCATGTGTGCTACT 2000
|||||| || | ||||||| | |||||||||||||||| ||||||| ||||||||||||
Sbjct 1998 AAGCCA-GAGATATATTCCATACAATACCTTACGAGCCATCAAGTGCTATGTGTGCTACT 2056
Query 2001 ATACTGAAAGCGTGTCTCATCCACGGGAACACAGACATTGGTAAATGGGCTGCAGATAAG 2060
||||||||||||| |||||||||||||||||| ||||||| | |||||||||||||||
Sbjct 2057 CTACTGAAAGCGTGCCTCATCCACGGGAACACAAACATTGGGGAGTGGGCTGCAGATAAG 2116
Query 2061 CTACTACTGGAGACGAAGCCAGAACACTTAGGGCACTATATGTTGCTTGCAGATATGTAT 2120
||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2117 TTACTACTAGAAACAAAGCCAGAACACTTAGGTCACTATATGTTGCTTGCAGATATGTAT 2176
Query 2121 GCAGTTACTGGTTCTTGGAACAAGCTTGTAACGGTGAAGACTTTCCTGAGTGACTTGGGT 2180
||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 2177 GCAGTAACTGGTTCTTGGAGCAAGCTTGTAACGGTGAAGACTTTACTGAGTGACTTGGGC 2236
Query 2181 GTGCAAAAGGCTCATGAGTTTGCTTTGATGGAAACAGATTCCGG-GTTAGATGAAGAGAT 2239
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 2237 GTGCAAAAGGCTCATGAGTTTGCTTTGATGGAAACAGATT-CGGAGTTAGATGGAGAGAA 2295
Query 2240 TAATAAGCCGATGATC---GATTCCGCCGTTAATCAGGAGCAAAGTTCAGATGAAGAACG 2296
|||||||||||||| | ||||| | | | |||||||||||||||||||||||||||||
Sbjct 2296 TAATAAGCCGATGAACGATGATTCTGTCATCAATCAGGAGCAAAGTTCAGATGAAGAACG 2355
Query 2297 TCTTGTAGAAGTAGGATAAAGAATCAA-TGTCTGATAGAA 2335
||||||||||||||||||||||||||| | ||||||||||
Sbjct 2356 TCTTGTAGAAGTAGGATAAAGAATCAAAT-TCTGATAGAA 2394
Score = 1546 bits (837), Expect = 0.0
Identities = 1082/1195 (91%), Gaps = 37/1195 (3%)
Strand=Plus/Plus
Query 1 AACCTTCACGCGCGGCTTCTCCTACTGTCGCTTCGTCCGGTTCTGTCGGTGCTGTCTCCG 60
||||||||||||||||| |||||||| |||||||||||||||| |||| | |||||||||
Sbjct 1 AACCTTCACGCGCGGCTACTCCTACTTTCGCTTCGTCCGGTTCCGTCGATACTGTCTCCG 60
Query 61 AATCACTG---TC-tt--tttttctt--t---t---ttCTGTCTCGTCTCTTCTATGTTT 106
|||||||| || || |||||||| | | ||||||| |||||| |||||||
Sbjct 61 AATCACTGTCTTCTTTCCTTTTTCTTCCTACATGACATCTGTCTTATCTCTTTTATGTTT 120
Query 107 CACTAGATGTACTCATACTTCCATGTTAAGCCTGTTA-ATGACGGAGAAGCGAAATTGGA 165
| ||||||||||| ||||||||||||| | ||| || | ||||||||||| ||||| |
Sbjct 121 CTCTAGATGTACTTATACTTCCATGTTTCGTCTG-TATACGACGGAGAAGCAAAATT-GC 178
Query 166 TT-AACTTTCGCTTTCATGGATCAAACTAGTGTTGGAAGAATAATCAAAACCCATTCTTT 224
|| |||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 179 TTGAACTTTCGCTTTGATGGATCAAACTAGTCTTGGAACAATAATCAAAATCCATTC--- 235
Query 225 GTTGCCATCATATGCAGCTTACTGTATATGCCGTCTTCTCCTTCTCGCTCTATACTCAGA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GTTGCCATCATATGCAGCTTACTGTATATGCCGTCTTCTCCTTCTCGCTCTATACTCAGA 295
Query 285 GGTCTCACTGTATCCGAAATTCGCAAGTTTATTCCTCAATCTTGGAAACAGCCACCGAGA 344
||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct 296 GGTCTCACTGTATCCGAAATTTGCAAGTTTATTCCTCAATCGTGGAAACAGCTGCCGAGA 355
Query 345 CCCATCTCTGAAACT-CCTAAAACCCATGATGA--A-TCAGTTCCACAAGTTCTTTTCGA 400
|||||||| |||||| || |||||||||||||| | |||||||||||||| |||||| |
Sbjct 356 CCCATCTCAGAAACTTCC-AAAACCCATGATGATGAATCAGTTCCACAAGTGCTTTTC-A 413
Query 401 AT-CATTTAGACATTGCATTGCCCATGGTCAATTTTATGAAGCTTTCAGAAATTTCTCTC 459
|| ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 414 ATTCATTTAGACATTGCATTTCCCATGGTCAATTATATGAAGCTTTCAGAACTTTCTCTC 473
Query 460 TACTTCGTTACCAGTCTGGTTCTCATGAATTCGTTTTGTATTCAGCAGCTTCTCTTTTAT 519
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 474 TACTTCGCTACCAGTCTGGTTCTCATGAATTCGTTTTGTATTCATCAGCTTCTCTTCTAT 533
Query 520 CTACCTGTGTGGGTTTTAGTGAGTTTGTTCCTGGGCAGCAAATTCATGCTCATTGTATCT 579
|||| ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||
Sbjct 534 CTACATGTGTGGGTTTTAATGAGTTTGTTCCTGGCCAGCAACTTCATGCTCATTGTATCT 593
Query 580 CCTCGGGTTTGGATTTTGACCCTGTTTTGGTCCCAAAGTTGGTTACTTTCTACTCTGCTT 639
| ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 594 CGTCGGGTTTGGAGTTTGACTCTGTTTTGGTCCCAAAGTTGGTCACTTTCTACTCTGCTT 653
Query 640 TTAATCTTCTTGACGAAGCTCAGACCATTACTGAGAACTCTGACATTTTGCATCCCTTGC 699
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 654 TTAATCTCCTTGACGAAGCTCAGACCATTACTGAGAACTCTGAGATTTTGCATCCCTTGC 713
Query 700 CGTGGAATGTGCTTATTGATTCGTATGTTAGGAATAAACGGTTTGAAGAGTCGGTTTCTG 759
||||||||||||| || | ||||||| ||||||| ||| ||||| | ||||| |||||||
Sbjct 714 CGTGGAATGTGCTCATCGGTTCGTATATTAGGAACAAAAGGTTTCAGGAGTCTGTTTCTG 773
Query 760 TTTACAAGCGAATGATGAGTAAAGGAATTCA-ACCGGATGAATTCACTTATCCGTCTGTT 818
||||||||||||||||||||||||||||| | | |||||||||| ||||| |||||||||
Sbjct 774 TTTACAAGCGAATGATGAGTAAAGGAATT-AGAGCGGATGAATTTACTTACCCGTCTGTT 832
Query 819 CTCAAAGCTTGTGGAGCATTACTGGATTTTGCATATGGGAGAGTGGTTCATGGCTCTGTT 878
|||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 833 ATCAAGGCTTGTGCAGCATTACTGGATTTTGCATATGGGAGAGTTGTTCATGGCTCTATT 892
Query 879 GAGGTTAGCTCTCACAGGTGCAGCTTGTATGTCTGCAATGCGTTGATATCTATGTATAAA 938
|||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 893 GAGGTTAGCTCTCACAGGTGTAACTTGTATGTCTGCAACGCGTTGATATCTATGTATAAA 952
Query 939 AGATTTGGTAAAGTGGATGTTGCTCGGAAATTGTTTGACAGGATGTCTGAAAGGGATGCT 998
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 953 AGATTTGGTAAAGTGGATGTTGCTCGGAGATTGTTTGACAGGATGTCTGAAAGGGATGCT 1012
Query 999 GTCTCATGGAATGCAGTAATTAACTGT-ATACTTCTGAAGGAC--TTCGAG-AAGCTTTT 1054
||||||||||||||| |||| |||||| ||||||| |||| | || | | ||||||||
Sbjct 1013 GTCTCATGGAATGCAATAATCAACTGTTATACTTCAGAAGAAAAGTTAGGGGAAGCTTTT 1072
Query 1055 AAGCTTTTTGATATTAA-GTA-CTCTCTGGTGTCGAAGCGAGTATTGTAACTTGGAACAC 1112
|||||| |||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AAGCTTCTTGATAG-AATGTATCTCTCTGGTGTCGAAGCGAGTATTGTAACTTGGAACAC 1131
Query 1113 ATTAGCTGGAGGTTGTTTGCAGGCAGGAAATTACGTAGGGGCTTTGAATTGTGTT 1167
| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1132 AATAGCTGGAGGTTGTTTGGAGGCAGGAAATTACATAGGGGCTTTGAATTGTGTT 1186
> AT1G71490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26932905-26935825 REVERSE LENGTH=2921
Length=2921
Score = 414 bits (224), Expect = 2e-114
Identities = 536/685 (78%), Gaps = 27/685 (4%)
Strand=Plus/Plus
Query 490 TCGTTTTGTATTCAGCAGCTTCTCTTTTATCTACCTGTGTGGGTTTTAGTG-AGTTTGTT 548
|||||||| |||| || ||||| |||||||| | || || | | || ||| | ||| ||
Sbjct 576 TCGTTTTGCATTCCGCGGCTTCCCTTTTATCCGCTTGCGTTGATGTTCGTGCA-TTT-TT 633
Query 549 -CCTGGGCAGCAAATTCATGCTCATTGTATCTCCTCGGGTTTGGATTTTGACCCTGTTTT 607
| ||| |||| |||| ||||| ||||| || |||||| | || | | || |||| ||
Sbjct 634 AGCAGGGGTGCAAGTTCACGCTCACTGTATTTCGTCGGGTGTCGAATATCACTCTGTGTT 693
Query 608 GGTCCCAAAGTTGGTTA-CTTTCTACTCTGCTTTTAATCTTCTTGACGAAGCTCAGA-CC 665
||||||||| |||||| |||| ||||||||||| ||||| | | |||||||| | |
Sbjct 694 AGTCCCAAAGCTGGTTACCTTT-TACTCTGCTTTCAATCTCCACAATGAAGCTCA-ATCG 751
Query 666 ATTACTGAGAACTCTGACATTTTGCATCCCTTGCCGTGGAATGTGCTTATTGATTCGTAT 725
|||| ||||||||||||||||||||||||||| || ||||||||||| |||| |||||||
Sbjct 752 ATTATTGAGAACTCTGACATTTTGCATCCCTTACCTTGGAATGTGCTCATTGCTTCGTAT 811
Query 726 GTTAGGAATAAACGGTTTGAAGA-GTCGGTTTCTGTTTACAAGCGAATGATGAGTAAAGG 784
| | ||| | | ||||| || || || ||| ||||||| ||||| |||| || ||
Sbjct 812 GCCAAGAACGAGCTTTTTGAGGAGGT-TATTGCTGCTTACAAGAGAATGGTGAGCAAGGG 870
Query 785 AATTCAACCGGATGAATTCACTTATCCGTCTGTTCTCAAAGCTTGTGGAGCATTACTGGA 844
||| | ||| |||| |||||||||||||||||||| || |||||||| | | ||| ||
Sbjct 871 AATCCGACCCGATGCCTTCACTTATCCGTCTGTTCTTAAGGCTTGTGGTGAAACACTTGA 930
Query 845 TTTTGCATATGGGAGAGTGGTTCATGGCTCTGTTGAGGTTAGCTCTCACAGGTGCAGCTT 904
|||| | ||| || ||||||||||| || | |||||||||||| ||| || ||||||
Sbjct 931 CGTTGCCTTTGGAAGGGTGGTTCATGGTTCCATCGAGGTTAGCTCTTACAAGTCCAGCTT 990
Query 905 GTATGTCTGCAATGCGTTGATATCTATGTATAAAAGATTTGGTAAA-GTGGATGTTGCTC 963
|||||| || ||||| ||||| |||||||||||||| ||| | ||| ||| | ||||||
Sbjct 991 GTATGTTTGTAATGCATTGATCTCTATGTATAAAAGGTTTAG-AAATATGGGTATTGCTC 1049
Query 964 GGAAATTGTTTGA-CAGGATGTCTGAAAGGGATGCTGTCTCATGGAATGCAGTAATTAAC 1022
||| |||||||| | | |||| |||||||||||||||||||||||||||||| || |||
Sbjct 1050 GGAGGTTGTTTGATC-GAATGTTTGAAAGGGATGCTGTCTCATGGAATGCAGTGATAAAC 1108
Query 1023 TGT-ATACTTCTGAAGG-ACT-TCGAG--AAGCTTTTAAGCTTTTTGATATTAA-GTACT 1076
||| || |||| ||||| | | | ||| |||| ||| ||||||| |||| || || |
Sbjct 1109 TGTTATGCTTCGGAAGGCA-TGTGGAGTGAAGCGTTTGAGCTTTTCGATAA-AATGTGGT 1166
Query 1077 CT-CTGGTGTCGAAG-CGAGTATTGTAACTTGGAACAC-ATTAGCTGGAGGTTGTTTGCA 1133
| | ||||| || | | ||| | |||||||||| | ||| ||||||||||||||||
Sbjct 1167 TTTCAGGTGTTGAGGTC-AGTGTCATAACTTGGAATATTATTT-CTGGAGGTTGTTTGCA 1224
Query 1134 GGCAGGAAATTACGTAGGGGCTTTG 1158
|||||||||| ||||| ||||||
Sbjct 1225 AACAGGAAATTATGTAGGAGCTTTG 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115913058405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5