BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472526 Length=2335 Score E Sequences producing significant alignments: (Bits) Value AT1G22830.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1714 0.0 AT1G71490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 414 2e-114 > AT1G22830.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:8076573-8079091 FORWARD LENGTH=2433 Length=2433 Score = 1714 bits (928), Expect = 0.0 Identities = 1099/1180 (93%), Gaps = 17/1180 (1%) Strand=Plus/Plus Query 1169 TTCTGTAGCTATGATTAATGGTTTAAAGGCATGCTCACACATTGGAGCGTTACAGTGGGG 1228 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1219 TTCTGTAGCTATGATTAATGGTTTAAAGGCATGCTCACACATTGGAGCGTTAAAGTGGGG 1278 Query 1229 AAAAGTATTTCATTGCCTTGTGATCCGTAG-T-T-G---TTGCCATGAAATTGACAATGT 1282 ||||||||||||||||||||||||||||| | | | || |||||| ||||||||||| Sbjct 1279 GAAAGTATTTCATTGCCTTGTGATCCGTAGTTGTAGTTTTTCCCATGATATTGACAATGT 1338 Query 1283 TCGAAATTCGTTGATTACAATGTACTCAAGATGCAGCGATCTTAGGCACGCCTTTATAGT 1342 ||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1339 TCGGAATTCGTTGATCACAATGTACTCAAGATGCAGTGATCTTAGGCACGCGTTTATAGT 1398 Query 1343 GTTTCAGCAGATTGAAGCAAATAGTTTGAGTACATGGAATTCTATCATTTCCGGTTATGC 1402 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1399 GTTTCAGCAGGTTGAAGCAAATAGTTTGAGTACATGGAATTCTATCATTTCCGGTTTTGC 1458 Query 1403 ACACAACGAGAGATCAGAAGAAACCTCTTTCCTGCTCAAGGAGATGTTGCTCTCTGGCTT 1462 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1459 ATACAACGAGAGATCAGAAGAAACCTCTTTCCTGCTCAAGGAGATGTTGCTCTCTGGATT 1518 Query 1463 TCACCCAAATTACATTACGCTTGCTAGCATTCTCCCTCTTTGTGCTCGGGTGGCAAACCT 1522 |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1519 TCACCCAAATCACATTACGCTTGCTAGCATTCTCCCTCTTTTTGCTCGGGTGGGAAACCT 1578 Query 1523 GCAACACGGGAAAGAGTTTCACTGCTACATCCTGAGGCGCCAAAGCTACAAGGACTGTTT 1582 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1579 GCAACATGGGAAAGAGTTTCACTGCTACATCCTGAGACGCCAAAGCTACAAGGACTGTTT 1638 Query 1583 AATCCTGTGGAACTCTCTTGTCGATATGTATGCAAAATCTGGGGAAATCATAGCTGCAAA 1642 ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1639 AATCCTGTGGAACTCCCTTGTCGATATGTATGCAAAATCCGGTGAAATCATAGCTGCAAA 1698 Query 1643 GCGAGTATTTGATTCGATGAGCAAGAGGGACAAAGTGACATACACTTCCTTGATAGATGG 1702 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 1699 GCGAGTATTTGATTCGATGAGGAAGAGGGACAAAGTGACATACACTTCTTTGATCGATGG 1758 Query 1703 ATATGGCAGGCTGGGTAAAGGAGAAGTCTCCTTGGCATGGTTCAAGGATATGAACAGATC 1762 |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| Sbjct 1759 ATATGGCAGGCTGGGTAAAGGAGAAGTCGCATTGGCATGGTTCAAGGATATGGACAGATC 1818 Query 1763 CGGTATCAAACCTGATCATGTAACTTTGGTTGCTGTTTTATCAGCTTGCAGCCATTCCAA 1822 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 1819 CGGTATCAAACCTGATCATGTAACTATGGTTGCAGTTTTATCAGCTTGCAGCCATTCCAA 1878 Query 1823 TTTAGTGCATGAAGGACACAGGTTGTTTACGAAGATGGAGAC-TGGGTTTGGTATACGCC 1881 |||||||| |||||||||| |||||||||||||||||||| | || |||||||||||||| Sbjct 1879 TTTAGTGCGTGAAGGACACTGGTTGTTTACGAAGATGGAG-CATGTGTTTGGTATACGCC 1937 Query 1882 CTCGCCTTGAACACTATTCTTGTATGGTTGATCTTTATTGCAGAGTAGGTGACCTGGCTG 1941 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | Sbjct 1938 TTCGCCTTGAACACTATTCTTGTATGGTTGATCTTTATTGCAGAGCAGGTTACCTGGATA 1997 Query 1942 AAGCCAGGA-AGATATTCCGCAAAATACCTTACGAGCCAACAAGTGCCATGTGTGCTACT 2000 |||||| || | ||||||| | |||||||||||||||| ||||||| |||||||||||| Sbjct 1998 AAGCCA-GAGATATATTCCATACAATACCTTACGAGCCATCAAGTGCTATGTGTGCTACT 2056 Query 2001 ATACTGAAAGCGTGTCTCATCCACGGGAACACAGACATTGGTAAATGGGCTGCAGATAAG 2060 ||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 2057 CTACTGAAAGCGTGCCTCATCCACGGGAACACAAACATTGGGGAGTGGGCTGCAGATAAG 2116 Query 2061 CTACTACTGGAGACGAAGCCAGAACACTTAGGGCACTATATGTTGCTTGCAGATATGTAT 2120 ||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2117 TTACTACTAGAAACAAAGCCAGAACACTTAGGTCACTATATGTTGCTTGCAGATATGTAT 2176 Query 2121 GCAGTTACTGGTTCTTGGAACAAGCTTGTAACGGTGAAGACTTTCCTGAGTGACTTGGGT 2180 ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 2177 GCAGTAACTGGTTCTTGGAGCAAGCTTGTAACGGTGAAGACTTTACTGAGTGACTTGGGC 2236 Query 2181 GTGCAAAAGGCTCATGAGTTTGCTTTGATGGAAACAGATTCCGG-GTTAGATGAAGAGAT 2239 |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| Sbjct 2237 GTGCAAAAGGCTCATGAGTTTGCTTTGATGGAAACAGATT-CGGAGTTAGATGGAGAGAA 2295 Query 2240 TAATAAGCCGATGATC---GATTCCGCCGTTAATCAGGAGCAAAGTTCAGATGAAGAACG 2296 |||||||||||||| | ||||| | | | ||||||||||||||||||||||||||||| Sbjct 2296 TAATAAGCCGATGAACGATGATTCTGTCATCAATCAGGAGCAAAGTTCAGATGAAGAACG 2355 Query 2297 TCTTGTAGAAGTAGGATAAAGAATCAA-TGTCTGATAGAA 2335 ||||||||||||||||||||||||||| | |||||||||| Sbjct 2356 TCTTGTAGAAGTAGGATAAAGAATCAAAT-TCTGATAGAA 2394 Score = 1546 bits (837), Expect = 0.0 Identities = 1082/1195 (91%), Gaps = 37/1195 (3%) Strand=Plus/Plus Query 1 AACCTTCACGCGCGGCTTCTCCTACTGTCGCTTCGTCCGGTTCTGTCGGTGCTGTCTCCG 60 ||||||||||||||||| |||||||| |||||||||||||||| |||| | ||||||||| Sbjct 1 AACCTTCACGCGCGGCTACTCCTACTTTCGCTTCGTCCGGTTCCGTCGATACTGTCTCCG 60 Query 61 AATCACTG---TC-tt--tttttctt--t---t---ttCTGTCTCGTCTCTTCTATGTTT 106 |||||||| || || |||||||| | | ||||||| |||||| ||||||| Sbjct 61 AATCACTGTCTTCTTTCCTTTTTCTTCCTACATGACATCTGTCTTATCTCTTTTATGTTT 120 Query 107 CACTAGATGTACTCATACTTCCATGTTAAGCCTGTTA-ATGACGGAGAAGCGAAATTGGA 165 | ||||||||||| ||||||||||||| | ||| || | ||||||||||| ||||| | Sbjct 121 CTCTAGATGTACTTATACTTCCATGTTTCGTCTG-TATACGACGGAGAAGCAAAATT-GC 178 Query 166 TT-AACTTTCGCTTTCATGGATCAAACTAGTGTTGGAAGAATAATCAAAACCCATTCTTT 224 || |||||||||||| ||||||||||||||| |||||| ||||||||||| |||||| Sbjct 179 TTGAACTTTCGCTTTGATGGATCAAACTAGTCTTGGAACAATAATCAAAATCCATTC--- 235 Query 225 GTTGCCATCATATGCAGCTTACTGTATATGCCGTCTTCTCCTTCTCGCTCTATACTCAGA 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 GTTGCCATCATATGCAGCTTACTGTATATGCCGTCTTCTCCTTCTCGCTCTATACTCAGA 295 Query 285 GGTCTCACTGTATCCGAAATTCGCAAGTTTATTCCTCAATCTTGGAAACAGCCACCGAGA 344 ||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| Sbjct 296 GGTCTCACTGTATCCGAAATTTGCAAGTTTATTCCTCAATCGTGGAAACAGCTGCCGAGA 355 Query 345 CCCATCTCTGAAACT-CCTAAAACCCATGATGA--A-TCAGTTCCACAAGTTCTTTTCGA 400 |||||||| |||||| || |||||||||||||| | |||||||||||||| |||||| | Sbjct 356 CCCATCTCAGAAACTTCC-AAAACCCATGATGATGAATCAGTTCCACAAGTGCTTTTC-A 413 Query 401 AT-CATTTAGACATTGCATTGCCCATGGTCAATTTTATGAAGCTTTCAGAAATTTCTCTC 459 || ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| Sbjct 414 ATTCATTTAGACATTGCATTTCCCATGGTCAATTATATGAAGCTTTCAGAACTTTCTCTC 473 Query 460 TACTTCGTTACCAGTCTGGTTCTCATGAATTCGTTTTGTATTCAGCAGCTTCTCTTTTAT 519 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 474 TACTTCGCTACCAGTCTGGTTCTCATGAATTCGTTTTGTATTCATCAGCTTCTCTTCTAT 533 Query 520 CTACCTGTGTGGGTTTTAGTGAGTTTGTTCCTGGGCAGCAAATTCATGCTCATTGTATCT 579 |||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| Sbjct 534 CTACATGTGTGGGTTTTAATGAGTTTGTTCCTGGCCAGCAACTTCATGCTCATTGTATCT 593 Query 580 CCTCGGGTTTGGATTTTGACCCTGTTTTGGTCCCAAAGTTGGTTACTTTCTACTCTGCTT 639 | ||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 594 CGTCGGGTTTGGAGTTTGACTCTGTTTTGGTCCCAAAGTTGGTCACTTTCTACTCTGCTT 653 Query 640 TTAATCTTCTTGACGAAGCTCAGACCATTACTGAGAACTCTGACATTTTGCATCCCTTGC 699 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 654 TTAATCTCCTTGACGAAGCTCAGACCATTACTGAGAACTCTGAGATTTTGCATCCCTTGC 713 Query 700 CGTGGAATGTGCTTATTGATTCGTATGTTAGGAATAAACGGTTTGAAGAGTCGGTTTCTG 759 ||||||||||||| || | ||||||| ||||||| ||| ||||| | ||||| ||||||| Sbjct 714 CGTGGAATGTGCTCATCGGTTCGTATATTAGGAACAAAAGGTTTCAGGAGTCTGTTTCTG 773 Query 760 TTTACAAGCGAATGATGAGTAAAGGAATTCA-ACCGGATGAATTCACTTATCCGTCTGTT 818 ||||||||||||||||||||||||||||| | | |||||||||| ||||| ||||||||| Sbjct 774 TTTACAAGCGAATGATGAGTAAAGGAATT-AGAGCGGATGAATTTACTTACCCGTCTGTT 832 Query 819 CTCAAAGCTTGTGGAGCATTACTGGATTTTGCATATGGGAGAGTGGTTCATGGCTCTGTT 878 |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| || Sbjct 833 ATCAAGGCTTGTGCAGCATTACTGGATTTTGCATATGGGAGAGTTGTTCATGGCTCTATT 892 Query 879 GAGGTTAGCTCTCACAGGTGCAGCTTGTATGTCTGCAATGCGTTGATATCTATGTATAAA 938 |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 893 GAGGTTAGCTCTCACAGGTGTAACTTGTATGTCTGCAACGCGTTGATATCTATGTATAAA 952 Query 939 AGATTTGGTAAAGTGGATGTTGCTCGGAAATTGTTTGACAGGATGTCTGAAAGGGATGCT 998 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 953 AGATTTGGTAAAGTGGATGTTGCTCGGAGATTGTTTGACAGGATGTCTGAAAGGGATGCT 1012 Query 999 GTCTCATGGAATGCAGTAATTAACTGT-ATACTTCTGAAGGAC--TTCGAG-AAGCTTTT 1054 ||||||||||||||| |||| |||||| ||||||| |||| | || | | |||||||| Sbjct 1013 GTCTCATGGAATGCAATAATCAACTGTTATACTTCAGAAGAAAAGTTAGGGGAAGCTTTT 1072 Query 1055 AAGCTTTTTGATATTAA-GTA-CTCTCTGGTGTCGAAGCGAGTATTGTAACTTGGAACAC 1112 |||||| |||||| || ||| |||||||||||||||||||||||||||||||||||||| Sbjct 1073 AAGCTTCTTGATAG-AATGTATCTCTCTGGTGTCGAAGCGAGTATTGTAACTTGGAACAC 1131 Query 1113 ATTAGCTGGAGGTTGTTTGCAGGCAGGAAATTACGTAGGGGCTTTGAATTGTGTT 1167 | ||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1132 AATAGCTGGAGGTTGTTTGGAGGCAGGAAATTACATAGGGGCTTTGAATTGTGTT 1186 > AT1G71490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26932905-26935825 REVERSE LENGTH=2921 Length=2921 Score = 414 bits (224), Expect = 2e-114 Identities = 536/685 (78%), Gaps = 27/685 (4%) Strand=Plus/Plus Query 490 TCGTTTTGTATTCAGCAGCTTCTCTTTTATCTACCTGTGTGGGTTTTAGTG-AGTTTGTT 548 |||||||| |||| || ||||| |||||||| | || || | | || ||| | ||| || Sbjct 576 TCGTTTTGCATTCCGCGGCTTCCCTTTTATCCGCTTGCGTTGATGTTCGTGCA-TTT-TT 633 Query 549 -CCTGGGCAGCAAATTCATGCTCATTGTATCTCCTCGGGTTTGGATTTTGACCCTGTTTT 607 | ||| |||| |||| ||||| ||||| || |||||| | || | | || |||| || Sbjct 634 AGCAGGGGTGCAAGTTCACGCTCACTGTATTTCGTCGGGTGTCGAATATCACTCTGTGTT 693 Query 608 GGTCCCAAAGTTGGTTA-CTTTCTACTCTGCTTTTAATCTTCTTGACGAAGCTCAGA-CC 665 ||||||||| |||||| |||| ||||||||||| ||||| | | |||||||| | | Sbjct 694 AGTCCCAAAGCTGGTTACCTTT-TACTCTGCTTTCAATCTCCACAATGAAGCTCA-ATCG 751 Query 666 ATTACTGAGAACTCTGACATTTTGCATCCCTTGCCGTGGAATGTGCTTATTGATTCGTAT 725 |||| ||||||||||||||||||||||||||| || ||||||||||| |||| ||||||| Sbjct 752 ATTATTGAGAACTCTGACATTTTGCATCCCTTACCTTGGAATGTGCTCATTGCTTCGTAT 811 Query 726 GTTAGGAATAAACGGTTTGAAGA-GTCGGTTTCTGTTTACAAGCGAATGATGAGTAAAGG 784 | | ||| | | ||||| || || || ||| ||||||| ||||| |||| || || Sbjct 812 GCCAAGAACGAGCTTTTTGAGGAGGT-TATTGCTGCTTACAAGAGAATGGTGAGCAAGGG 870 Query 785 AATTCAACCGGATGAATTCACTTATCCGTCTGTTCTCAAAGCTTGTGGAGCATTACTGGA 844 ||| | ||| |||| |||||||||||||||||||| || |||||||| | | ||| || Sbjct 871 AATCCGACCCGATGCCTTCACTTATCCGTCTGTTCTTAAGGCTTGTGGTGAAACACTTGA 930 Query 845 TTTTGCATATGGGAGAGTGGTTCATGGCTCTGTTGAGGTTAGCTCTCACAGGTGCAGCTT 904 |||| | ||| || ||||||||||| || | |||||||||||| ||| || |||||| Sbjct 931 CGTTGCCTTTGGAAGGGTGGTTCATGGTTCCATCGAGGTTAGCTCTTACAAGTCCAGCTT 990 Query 905 GTATGTCTGCAATGCGTTGATATCTATGTATAAAAGATTTGGTAAA-GTGGATGTTGCTC 963 |||||| || ||||| ||||| |||||||||||||| ||| | ||| ||| | |||||| Sbjct 991 GTATGTTTGTAATGCATTGATCTCTATGTATAAAAGGTTTAG-AAATATGGGTATTGCTC 1049 Query 964 GGAAATTGTTTGA-CAGGATGTCTGAAAGGGATGCTGTCTCATGGAATGCAGTAATTAAC 1022 ||| |||||||| | | |||| |||||||||||||||||||||||||||||| || ||| Sbjct 1050 GGAGGTTGTTTGATC-GAATGTTTGAAAGGGATGCTGTCTCATGGAATGCAGTGATAAAC 1108 Query 1023 TGT-ATACTTCTGAAGG-ACT-TCGAG--AAGCTTTTAAGCTTTTTGATATTAA-GTACT 1076 ||| || |||| ||||| | | | ||| |||| ||| ||||||| |||| || || | Sbjct 1109 TGTTATGCTTCGGAAGGCA-TGTGGAGTGAAGCGTTTGAGCTTTTCGATAA-AATGTGGT 1166 Query 1077 CT-CTGGTGTCGAAG-CGAGTATTGTAACTTGGAACAC-ATTAGCTGGAGGTTGTTTGCA 1133 | | ||||| || | | ||| | |||||||||| | ||| |||||||||||||||| Sbjct 1167 TTTCAGGTGTTGAGGTC-AGTGTCATAACTTGGAATATTATTT-CTGGAGGTTGTTTGCA 1224 Query 1134 GGCAGGAAATTACGTAGGGGCTTTG 1158 |||||||||| ||||| |||||| Sbjct 1225 AACAGGAAATTATGTAGGAGCTTTG 1249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115913058405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5