BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472530
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22850.1 | Symbols: | SNARE associated Golgi protein family... 1537 0.0
> AT1G22850.1 | Symbols: | SNARE associated Golgi protein family
| chr1:8080482-8082875 REVERSE LENGTH=1283
Length=1283
Score = 1537 bits (832), Expect = 0.0
Identities = 1140/1276 (89%), Gaps = 71/1276 (6%)
Strand=Plus/Plus
Query 19 TCATCATCATCTCCATTAAAGCTGCTTAAAAATGCGCAGCCTTACTACTCTGGGTCTGAc 78
||||||||||||||||||||||||||||| ||||||||||| | | ||||| ||||||||
Sbjct 29 TCATCATCATCTCCATTAAAGCTGCTTAAGAATGCGCAGCC-T-C-ACTCTAGGTCTGAC 85
Query 79 tctcagatcctcctcctcctcatctcttccattcacctgcaacttccgc-t-t-ct-t-c 133
||||||||||||||||||||| |||||||||||||||||||||| |||| | | || | |
Sbjct 86 TCTCAGATCCTCCTCCTCCTCTTCTCTTCCATTCACCTGCAACTCCCGCTTCTGCTCTCC 145
Query 134 t-ctcctccttcttc-t--tctAGACTCTGCAGACGATTTCATTTCCTTAAACCATGTTC 189
| ||||||||||||| | | |||||||| || |||||| ||||||||||||||||| ||
Sbjct 146 TCCTCCTCCTTCTTCGTCCTTTAGACTCTACAAACGATTCCATTTCCTTAAACCATGCTC 205
Query 190 TTCCCTCAAGCAAACCAAGAAGAAGAAGCAACAGTCTCTCCCATCCACCGCCCCGCCTCC 249
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 206 TTCCCTAAAGCAAACCAAGAAGAAGAAGCAACAGTCTCTCCCATCTACCGCTCCGCCTCC 265
Query 250 TCAGAGTCTCCGGTGGTTCTTCAATCCCAAATCCAGTGATGATGATAACGACGAAGATGA 309
||||||||||||||||||||||||| | ||||||| | ||||||| ||||||||||||||
Sbjct 266 TCAGAGTCTCCGGTGGTTCTTCAATTCTAAATCCACTAATGATGAAAACGACGAAGATGA 325
Query 310 TGCTAAGTCTGAGAGCGATGACGATGGCGGATCGGAAGGTGATGCTGCTATTAAGGGTAC 369
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 326 TGTTAAGTCTGAGAGCGATGATGATGGCGGATCGGAAGGTGATGCTGCTATTAAGGGTAC 385
Query 370 TATCTTAGCCGGAGTTTTGTTGATTGGTACTGTTGGTGGATTCGCCGGCGTTGGATATGT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TATCTTAGCCGGAGTTTTGTTGATTGGTACTGTTGGTGGATTCGCCGGCGTTGGATATGT 445
Query 430 CTATAGGGATCAGATTAATACGTTCCTCACTCAATTCTCCACTTACATCGAAGGTTATGG 489
||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 446 CTACAGGGATCAGATCAATACTTTCCTTACTCAATTCTCCACTTACATCGAAGGTTATGG 505
Query 490 TACGGCTGGGTATGC-TCTGTTCATTGCCGTTTATGCTGGCCTTGAGGCAAGCTTTTTCA 548
||||||||||||||| | | ||||||||||| |||||||| ||| | || |
Sbjct 506 TACGGCTGGGTATGCGT-TATTCATTGCCGTCTATGCTGGGCTT---G--AG-------A 552
Query 549 TACTCTTTCATATATTAGCCATTCCGGCTCTCCCATTGACGATGTCGGCTGGTCTTCTCT 608
|| | |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 553 TA------C------TAGCCATTCCAGCTCTCCCATTGACGATGTCGGCTGGTCTTCTCT 600
Query 609 TTGGTCCCCTCATTGGTACTATCATAGTTTCTATCAGTGGAACAATGGCTGCTAGTGTTG 668
| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 TCGGTCCACTCATTGGCACTATCATAGTTTCTATCAGTGGAACTATGGCTGCTAGTGTTG 660
Query 669 CTTTCTTAATTGCCAGATACTTTGCCCGAGAGCGCATCCTTAAGTTAGTTGAAGACAACA 728
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTTCTTAATTGCTAGATATTTTGCCCGAGAGCGCATCCTTAAGTTAGTTGAAGACAACA 720
Query 729 AGAAGTTCCTTGCCATTGATAAAGCAATTGGTGAAAATGGGTTTAGAGTTGTTACTCTGC 788
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 721 AGAAGTTCCTCGCCATTGATAAAGCGATTGGTGAAAATGGGTTTAGAGTTGTTACTCTCC 780
Query 789 TTCGGCTAAGCCCTCTACTTCCTTTCTCTCTTGGCAATTACCTGTACGGGTTGACATCTG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 TTCGGCTAAGCCCTCTACTTCCTTTCTCTCTTGGCAATTACCTGTACGGGTTGACGTCTG 840
Query 849 TGAAGTTTGTGCCTTATGTATTAGGAAGCTGGTTGGGTATGCTTCCAGGCTCTTGGGCTT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGAAGTTTGTGCCTTATGTATTAGGAAGCTGGTTGGGTATGCTTCCAGGCTCTTGGGCTT 900
Query 909 ATGTCAGTGCTGGGGCTTTTGGACGAGCAATCATTCAAGAAGAATCTAATGTTGGCTTGC 968
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATGTCAGCGCCGGGGCTTTTGGACGAGCAATCATTCAAGAAGAATCTAATGTTGGCTTGC 960
Query 969 CTGGAGGAAATGGCCAGCTCTTAACGCTCGGGGTAGGTCTGCTGGTTACTGCATTGGCTG 1028
|||||||||| |||||||| ||||| |||||||| |||||| ||||||||||||||||||
Sbjct 961 CTGGAGGAAACGGCCAGCTTTTAACTCTCGGGGTGGGTCTGTTGGTTACTGCATTGGCTG 1020
Query 1029 CAACATATGTGACAGGCCTTGCAAAGGATGCTATAAAGGATATTGATGATGATGATAAGT 1088
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 GAACATATGTGACAAGCCTTGCAAAGGATGCTATAAAGGATATTGATGATGATGAGAAG- 1079
Query 1089 AGAGA-G-AGA-T-GCAAACTA---AG--A----A-A-T--TTT-GATTCTCTAGGATTT 1130
||||| | | | | | |||| | || | | | | ||| || ||||||||||||
Sbjct 1080 AGAGATGCAAAGTAGGAAACAAGCCAGCGATTGGATAATGGTTTTGACTCTCTAGGATTT 1139
Query 1131 GTAAAAAACCTTAACAGAGTATCATATCATGA-CATCAA-T--ATTGTTCCATTATTATT 1186
|||||| || ||||||||||||| | || | | | || | |||| |||||||||
Sbjct 1140 GTAAAACGCC--AACAGAGTATCATGT-ATCAACGTTAAATGTATTGCTCCATTATT--- 1193
Query 1187 GTTCATAGTTGATATATAATTTTGAATCTTTTTTGTTCTTTAAAATTAAGCTGCAATA-T 1245
||| ||||||||||||||||| ||||||||||||| ||| ||| |||||| ||||| |
Sbjct 1194 GTTAATAGTTGATATATAATTC-GAATCTTTTTTGTCCTTCAAATTTAAGCACCAATAAT 1252
Query 1246 --GTGAGAAAATGCTT 1259
||||||||||||||
Sbjct 1253 AAGTGAGAAAATGCTT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5