BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472531
Length=3065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22860.1 | Symbols: | Vacuolar sorting protein 39 | chr1:80... 2409 0.0
> AT1G22860.1 | Symbols: | Vacuolar sorting protein 39 | chr1:8083400-8089236
FORWARD LENGTH=3255
Length=3255
Score = 2409 bits (1304), Expect = 0.0
Identities = 1461/1538 (95%), Gaps = 6/1538 (0%)
Strand=Plus/Plus
Query 1 ATGTCCAAATCTCGGGCAGTTGTGGAGCTCACTGCTCGTTTCGATCTCGGCGGCGACGAT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCCAAATCTCGGGCAGTTGTGGAGCTCACCGCTCGTTTCGATCTCGGCGGCGACGAT 60
Query 61 AAGATCCGAGCTTTATCTCTCTCACCTATCTCCGATTCCCAAACCCTAGTATACCTCGGA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AAGATCCGAGCTTTATCTCTCTCACCTATCTCCGATTCTCAAACCCTAGTATACCTCGGA 120
Query 121 ACTTCCTCCGGATCTCTGATTCTCCTCTCTCTCGACACTTTAACTAATATCGTCTCCCGT 180
|| | ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||
Sbjct 121 ACCTACTCCGGATCTCTGATTCTCCTATCTCTCGACACTTTAACTAATACCGTCTCGCGT 180
Query 181 CTCGGGAGTGTATCGCTGAGCGCTTCCCCTGTTGAGTCTATCTTTGTGCTTGGAGAGGAA 240
|||| ||||||||||||||| |||| |||||||||||||||||||| || || ||||||
Sbjct 181 CTCGCAAGTGTATCGCTGAGCCCTTCTCCTGTTGAGTCTATCTTTGTACTCGGCGAGGAA 240
Query 241 AGAGGGAGAGTTTTAGCACTCTGCAATGGCTACTTGTTCTTGA-TGGATTCGCTTCTTTC 299
|||||||||||| |||| ||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 241 AGAGGGAGAGTTCTAGCTCTCTGCAATGGTTACTTGTTCTT-ATTGGATTCGCTTCTTTC 299
Query 300 TCAACCAACTAAGAGATTGGGTGGTGTATTGAAAGGAATCAATGTGGTTGC-AAGGAGAG 358
||||||| ||||||||||||||||| |||||||||| ||||||||| |||| || |||||
Sbjct 300 TCAACCAGCTAAGAGATTGGGTGGTTTATTGAAAGGGATCAATGTGATTGCTAA-GAGAG 358
Query 359 TGAGAGGACGTGATTCGTCGAGTACTGACTTGTTGCCTTCTGAGATTTCGACGGATTCTA 418
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 TAAGAGGACGTGATTCGTCGAGTACTGACTTGTTGCCTTCTGAGATTTCAACGGATTCTA 418
Query 419 GCTCGAGCAAGAAGTTTCTTCAGTTGCTTGGTGCTGGGAATCTGGTGAATGATGTTAAAG 478
||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 419 GCTCGAGTAAGAAGTTTCTTCAGTTGCTTGGTGCTGGGAATCTTGTGAGTGATGTTAGAG 478
Query 479 GTAAGGACTT-TCGACATGAGAGAGTCCATCAAGGTCATTATGTTTTCGCTGTTGCTATT 537
|||| || || | |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 479 GTAATGA-TTCTAGACATGAGAGAGTCCAACAAGGTCACTATGTTTTCGCTGTTGCTATT 537
Query 538 GGTGAGAGAATGTTGTTGATTGAACTTCAATGTGATGAAAACGAAGGGTTATCTTCTTCT 597
||||||||||||||| |||||||||||||||||| |||||| ||||| ||| | |||
Sbjct 538 GGTGAGAGAATGTTGCTGATTGAACTTCAATGTGCTGAAAAAGAAGGATTAAGTGGTTCC 597
Query 598 TTTGTTGTTTTGAAAGAGGTTCTGGGGATTGGTGGGATCAAAACTTTGGTTTGGCTTGAT 657
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 TTTGTTGTTTTGAAAGAGATTCTGGGAATTGGTGGGATCAAAACTTTGGTTTGGCTTGAT 657
Query 658 GATTATGTTATTGCGGGTACTGTTAAAGGTTATAGTTTGATCTCGTGCGTCACTGGTCTA 717
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 GATTATGTTATTGCGGGAACTGTTAAAGGTTATAGTTTGATCTCGTGTGTCACTGGTCTA 717
Query 718 AGTGGAGTGATTTTTACATTGCCTGATGTGTCTGGCCCCCCGCTACTGAAATTGCTTTGT 777
||||| || ||||| |||||||||||||| ||||| || ||||| || |||||||| |||
Sbjct 718 AGTGGGGTTATTTTCACATTGCCTGATGTTTCTGGACCGCCGCTGCTTAAATTGCTCTGT 777
Query 778 AAAGAGTGGAAAGTGTTGTTGTTGGTGGATAATGTTGGAGTTGTTGTGGACACAAATGGT 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 AAAGAGTGGAAAGTGTTGTTGTTGGTGGACAATGTTGGAGTTGTTGTGGACACAAATGGT 837
Query 838 CAGCCTATTGGAGGGAGCCTTGTGTTTCGGAGGAGGCCTGATTCTGTTGGTGAATTGTCT 897
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 838 CAGCCTATTGGAGGGAGCCTTGTGTTTCGGAGGAGGCCTGATTCTGTTGGAGAATTGTCT 897
Query 898 TTCTATTTGGTGACTGTCGGAGATGGAAAAATGGAAATACATCAGAAGAAGTCTGGTGCT 957
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTCTACTTGGTGACTGTTGGAGATGGAAAAATGGAAATACATCAGAAGAAGTCTGGTGCT 957
Query 958 TGTGTTCAATCAGTTAGTTTTGGTCCTCAAGGATGTGGGCCTTCACTTTTGGCCGCAGAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGTGTTCAATCAGTTAGTTTTGGTCCTCAAGGATGTGGGCCTTCACTTTTGGCCGCAGAT 1017
Query 1018 GAGGCTGGAGACGGAAACCTTTTGGCTGTCACTTCCTTGTCAAAGCTTATTTTTTATCGG 1077
||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1018 GAGGCAGGAGACGGAAACCTTTTGGTTGTCACTACCTTGTCAAAGCTTATTTTTTATCGG 1077
Query 1078 AGAGTGCCTTACGAAGAACAGATTAAAGATCTCTTGAGGAAAAAGAGATACAGAGAAGCC 1137
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 1078 AGAGTGCCTTATGAAGAACAGATTAAAGACCTCTTGAGGAAAAAGAGATATAGAGAAACC 1137
Query 1138 ATCTCCTTGGTGGAGGAACTTGACTCACAGGGGGAAATTTCGAAAGATATGCTTTCGTTT 1197
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 ATCTCCTTGGTGGAGGAACTTGACTCACAGGGGGAAATTTCGAAAGACATGCTTTCGTTT 1197
Query 1198 CTTCATGCTCAAATAGGGTATCTACTGCTTTTTGATTTGCGCTTTGAGGAAGCTGTGAAT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTTCATGCTCAAATAGGGTATCTACTGCTTTTTGATTTGCGCTTTGAGGAAGCTGTGAAT 1257
Query 1258 CAATTTTTGAAGTCAGAAGAAATGGAACCTTCTGAAGTTTTTCCTTTTATCATGCGGGAT 1317
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAATTTTTGAAGTCAGAAAAAATGGAACCTTCTGAAGTTTTTCCTTTTATCATGCGGGAT 1317
Query 1318 CCTAATCGCTGGTCTTTGGTGGTTCCAAGAAACAGATACTGGGGACTGCATCCTCCCCCT 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CCTAATCGCTGGTCTTTGGTGGTTCCAAGAAACAGATACTGGGGACTGCATCCTCCCCCA 1377
Query 1378 GCTCCTTTCGAAGATGTTGTAGATAATGGGCTGATGGCCATCCAGAGAGCCAATTTTCTA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GCTCCTTTCGAAGATGTTGTAGATAATGGGCTGATGGCCATCCAGAGAGCCAATTTTCTT 1437
Query 1438 AGAAAAGCAGGAATGGACACTCCGGTTGACGAAGAGTTTTTCTCAAATCCCCCTAGTAGA 1497
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1438 AGAAAAGCAGGAATGGACACTCCGGTTGACGAAGAGTTTTTCTCAGATCCCCCTAGTAGA 1497
Query 1498 GCTGATTTATTGGATTCAGCAATTAAAAACATTACCAG 1535
||||||||| |||||||||||||||||||||| |||||
Sbjct 1498 GCTGATTTACTGGATTCAGCAATTAAAAACATAACCAG 1535
Score = 2202 bits (1192), Expect = 0.0
Identities = 1446/1559 (93%), Gaps = 56/1559 (4%)
Strand=Plus/Plus
Query 1529 TTACCAGAGCGTTAAACCGTGTTGAAGATATGGAGAATCTTGCATCTTCCGATAATAACT 1588
||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1611 TTA-CAGAGCATTAAACCGTGTTGAAGATATGGAGAATCTTGCATCTTCCGGTAATAAC- 1668
Query 1589 GTGTTGTTGTGGAGGAGTTGGAGACTCTTCTAACTGAATCTGGACACTTACGGACACTTG 1648
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 -TG-TGTTGTGGAGGAGTTGGAGACTCTTCTAACTGAATCTGGACACTTACGGACACTTG 1726
Query 1649 CATTCCTCTATGCAAGTAAGGGGATGAGTGCAAAGGCTCTTGCTATTTGGCGTCTCTTTA 1708
||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1727 CATTCCTCTATGCAACTAAGGGGATGGGTGCGAAGGCTCTTGCTATTTGGCGTCTCTTTA 1786
Query 1709 CGAAGAATTATTCATCTGGTCTATGGCAAGACTCAGATGATTTGGTGCCCTATTTACACG 1768
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1787 CGAAGAATTATTCATCTGGTCTATGGCAAGACTCAGATGACTTGGTACCCTATTTACACG 1846
Query 1769 ACAACGAGCTCATTAGGTTATCTGGTAAAGAGGCTGCTGCCGCAGAAGCAGCCAGAATTC 1828
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 ATAACGAGCTCATTAGGTTATCTGGTAAAGAGGCTGCTGCCGCAGAAGCAGCCAGAATTC 1906
Query 1829 TTGAGGAACCCTGTGATTCAGAACTGGCATTGCAGCATCTTAGTTGGATTTCAGA-GATA 1887
||||||||||||||||| |||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1907 TTGAGGAACCCTGTGATCCAGAACTGGCATTGCAGCATCTTAGTTGGATTGCAGATG-TA 1965
Query 1888 AACCCATTGTTTGCTATCCAAGTCTTGACGTCAGATAAAAGGACAGAAGAGCTTTCGCCA 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 AACCCATTGTTTGCTATCCAAGTCTTGACGTCAGATAAAAGGACAGAAGAGCTTTCGCCA 2025
Query 1948 GAGCAAGTGATCCAAGCTATTGATCCCAAAAAGGTTGAAATCATACAGAGGTACTTCCAA 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 GAGCAAGTGATCCAAGCTATTGATCCCAAAAAGGTTGAAATCATACAGAGGTACTTCCAA 2085
Query 2008 TGGTTGATTGAGGAAAGAGACTACTCTGACCCGCAGCTGCATACATCGTATGCTCTCTCA 2067
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2086 TGGTTGATTGAGGAAAGAGACTACACTGACCCGCAGCTGCATACATCGTATGCTCTCTCA 2145
Query 2068 CTTGCCAGATCAGCACTTGAGTGTGTTGAAGTTCAAAATGGTATCCTAGAAACTGATGCT 2127
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 2146 CTTGCCAGATCAGCACTTGAGTGTGTTGAAGTTCAAAATGGTATCCAAGAAGCTGATGTT 2205
Query 2128 GGA---GGCAGAGAAGCACATGATTGTAATGTTGGAAGTATTTCTTTGTTTGAAAGT-GA 2183
| || || || ||||||||| | ||||||||||||||||||||||||||| || ||
Sbjct 2206 CCAAATGGTAGTGAGGCACATGATAGCAATGTTGGAAGTATTTCTTTGTTTGAA-GTTGA 2264
Query 2184 TGTACGAGAAAGATTGCAGACCTTTTTGCAGTCTTCAGATCTATATGATCCTGAAGAAAT 2243
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 CGTACGAGAAAGATTGCAGGCCTTTTTGCAGTCTTCAGATCTATATGATCCTGAAGAAAT 2324
Query 2244 CTTGGTATTGATAGAAGGATCAGAACTGTGGTTGGAAAAGGCAATCCTATACCGAAGGAT 2303
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 CTTGGAATTGGTAGAAGGATCAGAACTGTGGTTGGAAAAGGCAATCCTATACCGAAGGAT 2384
Query 2304 AGG-ACAGGAGACATTGGTCCTCCAAATTCTTGCTCTGTTACTTGATATGTACCTGGATC 2362
|| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2385 TGGGA-AGGAGACATTGGTCCTCCAAATTCTTGCTCTGTTGCTTGATATGTACCTGGATC 2443
Query 2363 CTCAAAATGGTAAAGAGCCTATGTTCAAGGCTGCTGTTCGTCTTCTCCACAACCACGGGG 2422
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2444 CTCAAAATGGTAAAGAACCTATGTTCAAGGCTGCTGTTCGTCTGCTCCACAACCACGGGG 2503
Query 2423 CATCCCTTGATCCTTTGCAAGTTTTGGAAAGCTGTATCATGTCTAATTTGCAGAAACTGT 2482
||||||||||||||||||||| ||||| | | | | || | |
Sbjct 2504 AATCCCTTGATCCTTTGCAAGTATTGGA---C---A--A-----A-TT-G-------T-- 2539
Query 2483 CTCCTGATATGCCCTTAAAACTGGCATCAGATACAATTTTGAGAATGCTGAGGGCTCGGG 2542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2540 CTCCTGATATGCCCTTAAAACTGGCATCAGATACAATTTTGAGAATGCTGAGGGCTCGGG 2599
Query 2543 TTCATCATCATCGTCAAGGCCAAATCGTACACAATATCTCTCGTGCATTGGATGTAGACT 2602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2600 TTCATCATCATCGTCAAGGCCAGATCGTACACAATATCTCTCGTGCATTGGATGTAGACT 2659
Query 2603 CGAGGTTAGCAAGATTAGAAGAAAGATCACGTCACATGCAGATAAATGATGAGAGCCTCT 2662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2660 CGAGGTTAGCAAGATTAGAAGAAAGATCACGTCACATGCAGATAAATGATGAGAGCCTCT 2719
Query 2663 GTGATTCCTGCTATGCCCG-CTTGGGAACTAAGCTATTTGCTATGTACCCTGATGATACC 2721
||||||||||||||||||| || ||||||||| |||||||||||||||| || ||||||
Sbjct 2720 GTGATTCCTGCTATGCCCGTCT-GGGAACTAAATTATTTGCTATGTACCCCGACGATACC 2778
Query 2722 ATTGTCTGTTACAAGTGTTACCGACGCCTGGGTGAATCAAAGTCAGTAACAGGCCGTGAC 2781
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2779 ATTGTCTGTTACAAGTGTTACCGACGCCTGGGTGAATCAAAGTCAGTAACAGGCCGCGAC 2838
Query 2782 TTCAAACGAGATGTTCTGATAAAACCCGGTTGGTTAGTGAACCGGTAGCAGAAGAAGCCC 2841
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2839 TTCAAACGAGATGTTCTGATAAAACCCGGTTGGTTAGTTAACCGGTAGCAGAAGAAGCCC 2898
Query 2842 CTCTTGTTCCGCAACAATTGGCTTTTT--CACTTGACCTCTAACCCTCAAAAACATAGAG 2899
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 2899 ATCTTGTTCCGCATCAATTGGCTTTTTTTCACTTGACCTCTAACCCTCACAAACACAGAG 2958
Query 2900 TTGGTATAGTACAGAAAGCAGCTCACGTAGTTCTCC-TTGCTACAAATAATGAGGAACTT 2958
|||||| |||||| | ||||||||||| |||| ||| |||||||||||||||| |||| |
Sbjct 2959 TTGGTACAGTACATACAGCAGCTCACGCAGTT-TCCCTTGCTACAAATAATGAAGAACAT 3017
Query 2959 AAGAATCTGCGTTCGATGGCCATAGCTTCTTCAAGCTCGTCTCTAGGCTTGTG--GAGAG 3016
||| |||| |||||||| ||||||||||| |||||||||||||||| |||||| |||||
Sbjct 3018 AAGGATCTCCGTTCGATCGCCATAGCTTCATCAAGCTCGTCTCTAGACTTGTGTAGAGAG 3077
Query 3017 AT---ATTCG--AACA----AAG-GTTCTTTCATGTTACTGTAAATGGTGGAGGGCATC 3065
|| | ||| |||| || |||||| ||| ||||||||||||||||| ||||||
Sbjct 3078 ATTCGAATCGGCAACATTTCAAAAGTTCTT-CATCTTACTGTAAATGGTGGAAGGCATC 3135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152407172834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5