BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472536

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22885.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   329    9e-90


> AT1G22885.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast 
hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:8101593-8102258 FORWARD 
LENGTH=350
Length=350

 Score =  329 bits (178),  Expect = 9e-90
 Identities = 267/305 (88%), Gaps = 26/305 (9%)
 Strand=Plus/Plus

Query  24   ACTTATTTTAAATAATGGCTACAAAGGCATCACATTTAGTTGTTTTTCTTCTCTCTTTGC  83
            |||||||||||  |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  2    ACTTATTTTAAGCAATGGCTACAAAAGCATCAAATTTAGTTGTTTTTCTTCTCTCTTTGC  61

Query  84   TTCTTCTGCTCTTATTGATCTCCTTTCAAGTTGGAGTCGCCGACGCCAAACGCAACAAA-  142
            |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| 
Sbjct  62   TTCTTCTGTTCTTATTGATATCCTTTCAAGTTGGAGTCGCCGACGCCACACGCAACAAAC  121

Query  143  C--GTCAA-GAC-----CAGC-T-T---TT-GGATTACCCTCGCCCTCCCACCGCCCCTA  188
            |  ||||| |||     |||| | |   ||  ||||||||||||||||||||||||||||
Sbjct  122  CAGGTCAAGGACAAGAACAGCGTGTGGATTATGATTACCCTCGCCCTCCCACCGCCCCTA  181

Query  189  TATATCTGCCGCCCTCTAAATCGCGCAAAGGAAAAGGTCCATAAGCCAAAGTACGTACGT  248
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |   |
Sbjct  182  TATATCTGCCGCCGTCTAAATCGCGCAAAGGAAAAGGTCCATAAGCCAAAGTAC-T---T  237

Query  249  TTTGACCAGTGATGGAGAAGAAACTATA-TA-T-AATGG-TCAAGA--CTCGAGATTAAT  302
            |||||| ||||||||||||||||||||| |  | || |  ||||||  ||||||||||||
Sbjct  238  TTTGACAAGTGATGGAGAAGAAACTATAATTGTCAA-GACTCAAGAGACTCGAGATTAAT  296

Query  303  GTTGT  307
            |||||
Sbjct  297  GTTGT  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5