BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472537

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   449    8e-126


> AT1G22890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant 
structures; EXPRESSED DURING: 11 growth stages; Has 17 Blast 
hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:8102818-8103532 FORWARD 
LENGTH=559
Length=559

 Score =  449 bits (243),  Expect = 8e-126
 Identities = 307/337 (91%), Gaps = 7/337 (2%)
 Strand=Plus/Plus

Query  1    AATTGTGAGAGAGTGGAACACTTCATTAGCAAAATGGCTGCAAAGACATCAAATTT-GCT  59
            ||||| |||||||| |||||||  |||||||||||||||||||| ||||||||||| | |
Sbjct  1    AATTGAGAGAGAGTAGAACACTAAATTAGCAAAATGGCTGCAAAAACATCAAATTTAG-T  59

Query  60   TGCTCTTCTTCTCTCTTTGTTTCTTCTGCTTCTATTTGTCTCCTCCTCACAAGTTGGAGT  119
            ||||||||||||||||||||||||||||||||||| | |||||||   |||||||||| |
Sbjct  60   TGCTCTTCTTCTCTCTTTGTTTCTTCTGCTTCTATCTATCTCCTC---ACAAGTTGGACT  116

Query  120  AGCCGAGGCCAAACGCCACCTTCGTAACAAATTGCGTTTGGATTGTGTTTCCGATCCATC  179
            || ||||||||||||| |||| |||||||| |||||||||||||| |||||| |||| ||
Sbjct  117  AGGCGAGGCCAAACGCAACCTACGTAACAATTTGCGTTTGGATTGCGTTTCCCATCCCTC  176

Query  180  TCCTCCTCCTCCTCGTCGTTCCATGGCCCCTCCAAtttttttACCGCCTTCTAGATCACA  239
            |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  177  TCCTCCTCCTCCTCATCGTTCCATGGCCCCTCCAATTTTTGTACCGCCTTCTACATCACA  236

Query  240  CAAAGGAAAAGGCCCATAAACAAACTCATGCAAGTAACCGAGAAGAAGTGATCAAGATTT  299
            ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| ||||
Sbjct  237  CAAAGGACAAGGCCCATAAACAAAATCATACAAGTAACCGAGAAGAAGTGATCAAAATTT  296

Query  300  CATAC-AAAAAGAAGAAGTGATCAAGATTACATATAG  335
            ||||| ||||| ||||||||||||||||| |||||||
Sbjct  297  CATACCAAAAA-AAGAAGTGATCAAGATTCCATATAG  332


 Score =  126 bits (68),  Expect = 1e-28
 Identities = 78/83 (94%), Gaps = 0/83 (0%)
 Strand=Plus/Plus

Query  342  ATTATACAACTTATTGTGTCTAATGCAAGTTGAACCTTTTCATATCATGTTGGAATTTTA  401
            ||||||||||||||||||||| || ||||||||||||||||| | |||||||||||||||
Sbjct  411  ATTATACAACTTATTGTGTCTTATACAAGTTGAACCTTTTCAGAGCATGTTGGAATTTTA  470

Query  402  AATCATATATTGTAAATATATAT  424
            ||||||||||||| |||||||||
Sbjct  471  AATCATATATTGTGAATATATAT  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107099600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5