BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472541
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A ... 1895 0.0
AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B ... 1027 0.0
> AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A
| chr1:8109714-8112051 REVERSE LENGTH=1398
Length=1398
Score = 1895 bits (1026), Expect = 0.0
Identities = 1124/1172 (96%), Gaps = 4/1172 (0%)
Strand=Plus/Plus
Query 37 TCTCTCTTTCTTTCTTACTCAAACCCTTAAATCAATTTTCGCGATTTTAGCAAAACCCTA 96
||| ||||||||||| ||||||||||| ||||||||| |||||| || ||||||||||||
Sbjct 69 TCT-TCTTTCTTTCTGACTCAAACCCTCAAATCAATTCTCGCGA-TTAAGCAAAACCCTA 126
Query 97 GATTTCTTCTACTCTTCGAAGTCGATTTCAATGGAAGGTTCGTCGTCAGCCATCGCGAGG 156
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 127 GATTTATTCTACTCTTCGAAGTCGATTTCAATGGAAGGTTCCTCGTCAGCCATCGCGAGG 186
Query 157 AAGACATGGGAGCTAGAGAACAACATTCTCACAGTGGAACCAACCGATTCAGCCTCCGAT 216
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 187 AAGACATGGGAGCTAGAGAACAACATTCTCCCAGTGGAACCAACCGATTCAGCCTCCGAC 246
Query 217 AGTATTTTCCACTACGACGACGCTGCGCAAGCCAAAATCCAGCAGGAGAAGCCATGGGCC 276
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 247 AGTATATTCCACTACGACGACGCTTCACAAGCCAAAATCCAGCAGGAGAAGCCATGGGCC 306
Query 277 TCCGATCCTAACTACTTCAAGCGCGTTCAAATCTCAGCACTCGCTCTTCTTAAGATGGTG 336
||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||
Sbjct 307 TCCGATCCTAACTACTTCAAGCGCGTTCACATCTCAGCCCTTGCTCTTCTCAAGATGGTG 366
Query 337 GTTCACGCTCGCTCTGGTGGAACAATCGAGATCATGGGTCTGATGCAGGG-AAAGACCGA 395
|||||||||||||| ||||| |||||||||||||||||||| |||||||| ||| |||||
Sbjct 367 GTTCACGCTCGCTCCGGTGGCACAATCGAGATCATGGGTCTTATGCAGGGTAAA-ACCGA 425
Query 396 GGGTGATACCATCATTGTTATGGATGCTTTTGCTTTGCCTGTTGAAGGAACTGAGACTAG 455
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 426 GGGTGATACAATCATCGTTATGGATGCTTTTGCTTTGCCTGTTGAAGGTACTGAGACTAG 485
Query 456 GGTTAATGCTCAGGCTGATGCGTATGAGTATATGGTTGAATACTCTCAGACCAACAAGCT 515
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 486 GGTTAATGCTCAGTCTGATGCCTATGAGTATATGGTTGAATACTCTCAGACCAGCAAGCT 545
Query 516 GGCTGGGAGGTTGGAGAACGTTGTTGGATGGTATCACTCTCACCCTGGATATGGATGTTG 575
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 546 GGCTGGGAGGTTGGAGAACGTTGTTGGATGGTATCACTCTCACCCTGGGTATGGATGTTG 605
Query 576 GCTCTCGGGTATTGATGTTTCGACACAGATGCTTAACCAACAGTATCAGGAGCCTTTCTT 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 606 GCTCTCGGGTATTGATGTTTCGACACAGATGCTTAACCAACAGTATCAGGAGCCATTCTT 665
Query 636 AGCTGTTGTTATTGATCCAACAAGGACTGTTTCGGCTGGTAAGGTTGAGATTGGGGCATT 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGCTGTTGTTATTGATCCAACAAGGACTGTTTCGGCTGGTAAGGTTGAGATTGGGGCATT 725
Query 696 CAGAACATATCCAGAGGGACATAAGATCTCGGATGATCATGTATCTGAGTATCAGACTAT 755
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 726 CAGAACATATCCAGAGGGACATAAGATCTCGGATGATCATGTTTCTGAGTATCAGACTAT 785
Query 756 CCCTCTTAACAAGATCGAGGACTTTGGTGTACATTGCAAACAGTACTACTCATTGGACAT 815
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CCCTCTTAACAAGATTGAGGACTTTGGTGTACATTGCAAACAGTACTACTCATTGGACAT 845
Query 816 CACTTATTTCAAGTCATCTCTCGATAGTCATCTTCTGGATCTCCTTTGGAACAAGTACTG 875
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 846 CACTTATTTCAAGTCATCTCTCGATAGTCACCTTCTGGATCTCCTTTGGAACAAGTACTG 905
Query 876 GGTGAACACTCTTTCTTCTTCCCCACTGTTAGGCAATGGAGACTATGTTGCCGGACAAAT 935
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 906 GGTGAACACTCTTTCTTCTTCCCCACTGTTGGGCAATGGAGACTATGTTGCCGGGCAAAT 965
Query 936 ATCAGACTTGGCTGAGAAGCTCGAGCAAGCGGAGAATCAGCTTGCTCACTCCCGGTTTGG 995
||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| |||
Sbjct 966 ATCAGACTTGGCTGAGAAGCTCGAGCAAGCGGAGAGTCAGCTCGCTAACTCCCGGTATGG 1025
Query 996 AGGAATTGCACCAGCCGGTCACCAGAGGAGAAAAGAGGATGAGCCTCAACTCGCGAAGAT 1055
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1026 AGGAATTGCGCCAGCCGGTCACCAAAGGAGGAAAGAGGATGAGCCTCAACTCGCGAAGAT 1085
Query 1056 AACTCGGGATAGTGCAAAGATAACCGTCGAGCAGGTCCATGGACTAATGTCACAGGTTAT 1115
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1086 AACTCGGGATAGTGCAAAGATAACTGTCGAGCAGGTCCATGGACTAATGTCACAGGTTAT 1145
Query 1116 CAAAGACATCTTGTTCAATTCCGCACGCCAGTCCAAGAAGTCTCCCAACGACTCATCAGA 1175
|||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||
Sbjct 1146 CAAAGACATCTTGTTCAATTCCGCTCGTCAGTCCAAGAAGTCTGCTGACGACTCATCAGA 1205
Query 1176 TCCAGAGCCCATGATTACATCGTGAAGTTGGT 1207
||||||||||||||||||||||||||||||||
Sbjct 1206 TCCAGAGCCCATGATTACATCGTGAAGTTGGT 1237
Score = 154 bits (83), Expect = 2e-36
Identities = 87/89 (98%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1208 TTTGACCCGGTTTATGAGGCAATGCACATTGTTCCCTATATCTCTAGTGTAGTATCTGCT 1267
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1277 TTTGACCCGGTTTATGAGGCAATGCCCATTGTTCCCTATATCTCTAGTGTAGTATCTGCT 1336
Query 1268 TCAGACAAAGCTCTTTGGGTTATTAAATG 1296
|||||||||| ||||||||||||||||||
Sbjct 1337 TCAGACAAAGATCTTTGGGTTATTAAATG 1365
Score = 80.5 bits (43), Expect = 4e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1 TCTCGCAAACCGGTTTAACCCAAGAACCCAAAGATCTCTCTCT 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 TCTCGCAAACCGGTTTAACCCAAGAACCCAAAGATCTCTCTCT 56
> AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B
| chr1:26852461-26854396 FORWARD LENGTH=1317
Length=1317
Score = 1027 bits (556), Expect = 0.0
Identities = 923/1098 (84%), Gaps = 33/1098 (3%)
Strand=Plus/Plus
Query 126 AATGGAAGGTTCGTCGTCAG-CCATCGCGAGGAAGACATGGGAGCTAGAGAACAACATTC 184
|||||| ||||||||||| | | || || |||||||||||||| |||||||||| |||||
Sbjct 99 AATGGAGGGTTCGTCGTC-GACGATAGCAAGGAAGACATGGGAACTAGAGAACAGCATTC 157
Query 185 TCACAGTGGAAC-CAACC-GATTCAGCCTCCGATAGTATTTTCCACTACGACGACGCTGC 242
| ||||| | || | ||| |||||| ||||||| | || ||| |||||||||| || |
Sbjct 158 TAACAGTAG-ACTC-ACCTGATTCAACCTCCGACAACATCTTCTACTACGACGATACTTC 215
Query 243 GCAAG-CCAAAATCCAGCAGGAGAAGCCATGGGCCTCCGATCCTAACTACTTCAAGCGCG 301
| || | | ||||||| ||||| || |||| |||||| ||||||| || || |
Sbjct 216 AC-AGACTAGGTTCCAGCAAGAGAAACCGTGGGAGAATGATCCTCACTACTTTAAACGAG 274
Query 302 TTCAA-ATCTCAGCACTCGCTCTTCTTAAGATGGTGGTTCACGCTCGCTCTGGTGGAACA 360
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 275 -TCAAGATCTCAGCGCTCGCTCTTCTTAAGATGGTGGTTCACGCTCGCTCTGGTGGTACA 333
Query 361 ATCGAGATCATGGGTCTGATGCAGGGAAAGACCGAGGGTGATACCATCATTGTTATGGAT 420
|| || || |||||||| ||||| || |||||||| |||||||| |||||||||||||||
Sbjct 334 ATTGAAATAATGGGTCTTATGCAAGGTAAGACCGATGGTGATACTATCATTGTTATGGAT 393
Query 421 GCTTTTGCTTTGCCTGTTGAAGGAACTGAGACTAGGGTTAATGCTCAGGCTGATGCGTAT 480
||||||||||| || || ||||| |||||||| |||||||||||||||| |||||| |||
Sbjct 394 GCTTTTGCTTTACCAGTGGAAGGTACTGAGACAAGGGTTAATGCTCAGGATGATGCTTAT 453
Query 481 GAGTATATGGTTGAATACTCTCAGACCAACAAGCTGGCTGGGAGGTTGGAGAACGTTGTT 540
||||| |||||||| || || |||||||||||||| || ||| || ||||||| ||||||
Sbjct 454 GAGTACATGGTTGAGTATTCACAGACCAACAAGCTCGCGGGGCGGCTGGAGAATGTTGTT 513
Query 541 GGATGGTATCACTCTCACCCTGGATATGGATGTTGGCTCTCGGGTATTGATGTTTCGACA 600
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 514 GGATGGTATCACTCTCACCCTGGATATGGATGCTGGCTCTCCGGTATTGATGTTTCTACG 573
Query 601 CAGATGCTTAACCAACAGTATCAGGAGCC-TTTCTTAGCTGTTGTTATTGATCCAACAAG 659
|||| ||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||
Sbjct 574 CAGAGGCTTAACCAACAGCATCAGGAGCCATTT-TTAGCTGTTGTTATTGATCCCACAAG 632
Query 660 GACTGTTTCGGCTGGTAAGGTTGAGATTGGGGCATTCAGAACATA-TCCAGAGGGACATA 718
||||||||| |||||||||||||||||||| || ||||||||||| || | ||| | |||
Sbjct 633 GACTGTTTCAGCTGGTAAGGTTGAGATTGGTGCTTTCAGAACATACTCTAAAGG-ATATA 691
Query 719 AGATCTCG-GATGATCATGTATCTGAGTATCAGACTATCCCTCTTAAC-AAGATCGAGGA 776
|| ||| ||||| | ||| ||||||||||| ||||| ||| |||| ||||| |||||
Sbjct 692 AGC-CTCCAGATGAACCTGTTTCTGAGTATCAAACTATTCCT-TTAAATAAGATTGAGGA 749
Query 777 CTTTGGTGTACATTGCAAACAGTACTACTCATTGGACATCACTTATTTCAAGTCATCTCT 836
||||||||| || |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 750 CTTTGGTGTTCACTGCAAACAGTACTATTCATTAGATGTCACTTATTTCAAGTCATCTCT 809
Query 837 CGATAGTCATCTTCTGGATCTCCTTTGGAACAAGTACTGGGTGAACACTCTTTCTTCTTC 896
||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 810 TGATTCTCACCTTCTGGATCTACTATGGAACAAGTACTGGGTGAACACTCTTTCTTCTTC 869
Query 897 CCCACTGTTAGGCAATGGAGACTATGTTGCCGGACAAATATCAGACTTGGCTGAGAAGCT 956
|||||| | || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 870 TCCACTGCTGGGTAATGGAGACTATGTTGCTGGACAAATATCAGACTTAGCTGAGAAGCT 929
Query 957 CGAGCAAGCGGAGAATCAGCTTGCTCACTCCCGGTTTGGAGGAATTG--C-ACCAGCCGG 1013
|||||||| |||| ||| || | ||| || || ||||||||| ||| | | || ||
Sbjct 930 TGAGCAAGCCGAGAGTCATCTGGTTCAGTCTCGCTTTGGAGGAGTTGTGCCATCATCCCT 989
Query 1014 TCACCAGAGGAGAAAAGAGGATGAGCCTCAACTCGCGAAGATAACTCGGGATAGTGCAAA 1073
||| ||| | ||||||||||||| ||||||| | ||||||||||||||||| |||||
Sbjct 990 TCATAAGA--A-AAAAGAGGATGAGTCTCAACTAACTAAGATAACTCGGGATAGCGCAAA 1046
Query 1074 GATAACCGTCGAGCAGGTCCATGGACTAATGTCACAGGTTATCAAAGAC-ATCTTGTTCA 1132
|||||| || || |||||||||||||||||||| ||||| || ||||| | || ||||
Sbjct 1047 GATAACTGTGGAACAGGTCCATGGACTAATGTCGCAGGTCATAAAAGATGAA-TTATTCA 1105
Query 1133 ATTCCGCACGCCAGTCCAAGAAG---TCTCCCAAC-GACTCATCAGATCCAGAGCCC-AT 1187
| || || |||||||| || ||||||| | ||||| || |||||||| ||| ||
Sbjct 1106 ACTCAATGCGTCAGTCCAACAACAAATCTCCCA-CTGACTCGTCGGATCCAGA-CCCTAT 1163
Query 1188 GATTACATCGTGAAGTTG 1205
|||||||| ||||||||
Sbjct 1164 GATTACATATTGAAGTTG 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5