BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472548
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1611 0.0
> AT1G22970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G71150.1);
Has 134 Blast hits to 132 proteins in 48 species: Archae -
0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses
- 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:8130716-8132208
REVERSE LENGTH=1207
Length=1207
Score = 1611 bits (872), Expect = 0.0
Identities = 1087/1189 (91%), Gaps = 22/1189 (2%)
Strand=Plus/Plus
Query 1 AAGACAAAAATGGTGAAATCAAAGAAAGAAGATCTAAATCAATTTCTAATTCCTCGTCTT 60
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAGACAAAAATGGTGAAAACAAAGAAAGAAGATCTAAATCAATTTCTGATTCCTCGTCTC 60
Query 61 AACACCATCTACGATACTCTACAGTTGTTCGATCGAACAGCTTCTCCTACAGTGGAGAA- 119
|||||||||||||| || || |||||||||||| |||||||||||||||||||||| ||
Sbjct 61 AACACCATCTACGAAACCCTCCAGTTGTTCGATGGAACAGCTTCTCCTACAGTGGA-AAG 119
Query 120 AGTTAATTGGAACGATGTTCTCCAGATGTCTGATCACCTCTCTAAACAAGCCACCATAGT 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGTTAATTGGAACGATGTTCTTCAGATGTCTGATCACCTCTCTAAACAAGCCACCATAGT 179
Query 180 GGGAATGCTATGGACTGGAGAATCTCCTAAAGCTGAATCACTTAAAGAGACAATGGAGTC 239
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 180 GGGAATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAAGAGACTATGGAGTC 239
Query 240 TTACTTCAATGCTCTTCAAGGGTTTTTGCTCTGTTGCCATGGAAGCACAGTTGGTGCTGG 299
|||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 240 TTACTTCAATGCCCTTCAAGGGTTTTTACTCTGTTGCCATGGAAGCACTCTTGGTGCTGG 299
Query 300 ACCTACACTTTCTTCAATCATACATGTTTCTGTTAAGCAAATCGTTGATTCCAGCTTTAG 359
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 300 ACCTACGCTTTCTTCAATCATACATGTTTCTGTTAAGCAAATTGTTGATTCTAGCTTCAG 359
Query 360 ATTGTTGCAGGGTTCTGTCTC-CTTATACGAGGGATCATATGAGAAGGATAAGAAGCCGT 418
|||||||||||||||||| || || |||||||||||| ||||||||||||||||||||||
Sbjct 360 ATTGTTGCAGGGTTCTGTTTCTCT-ATACGAGGGATCGTATGAGAAGGATAAGAAGCCGT 418
Query 419 CTATTCCGCAGCTTTCGGGAGTGGTTTGGGAGGCATGCTCCAGTTTCAAGAAGGTTCCTG 478
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 419 CTATTCCGCAGCTCTCGGGAGTGGTTTGGGAAGCATGTTCCAGTTTCAAGAAGGTTCCTG 478
Query 479 CAACAAACATTGTTGCGATTGGTAGGGCTATTACACAGGTTGCAGTTTCCATGAAGGATG 538
||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 479 CAACAAACATTACTGCGATTGGTAGAGCTATTACACAGGTTGCGGTTTCCATGAAGGATG 538
Query 539 TTCTTAGGGAGATGAAAGAAGTGAAGCCAGCTTGTCATTCAGCTGAATGTGAGGCATCTG 598
||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||
Sbjct 539 TTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTTATCTGAATGTGAGGCATCTG 598
Query 599 GTGATAATATGTC--G-G--G-TGATGATGATGACGATTTAGGCGATGATTTGTCTCTTG 652
||||||||||||| | | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 599 GTGATAATATGTCTAGTGATGATGATGATGATGACGATTTAGGCGATGATTTGTCTCCTG 658
Query 653 AAGAAATGGAAGTTGCTAGGATGGTTGTTGATATTGTGTCTGAGACGATCATGGTGATAA 712
|||||||||||||||||| |||||| ||| ||||| ||||| || |||||||||||||
Sbjct 659 AAGAAATGGAAGTTGCTACAATGGTTACTGAGATTGTCTCTGAAACTATCATGGTGATAA 718
Query 713 AAGAACTCATTCGAGTTATCACTGGCATGATTAAGATGGAGAATCCAAATGATAATAGCG 772
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 719 AAGAACTCATTCGAGTTATCACTGGTATGATTAAGATGGAGAATCCAAAGGATAATAGTG 778
Query 773 GGTTTGTGGAGTCACTTGAGAAGCTACTGAAGTTGTGTCAAGGAACCGGAGTACAAATCG 832
||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 779 GGTTTGTGGAGTCGCTTGAGAAGCTACTGAAGCTGTGTCAAGGAACTGGTGTACAAATCG 838
Query 833 ATGAGCTTGGAGCTTGCGTCTATCCACCGCAGGAGATGGACAAAATGAAGCAAACGGTAA 892
|||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||| || |
Sbjct 839 ATGAGCTTGGTGCTTGTGTCTATCCACCGCAGGAGATGAACAAGATGAAGCAAACAGTGA 898
Query 893 AGATAATAAAGGGGAATCTCGACGAATTTGAAACTGAAGTTGAGCGTTTGAAGAGTTCTT 952
|| | ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGGTTATACAGGGAAATCTAGACGAATTTGAAACTGAAGTTGAGCGTTTGAAGAGTTCTT 958
Query 953 CAGACGGCTGTTCGGGAGCTTGCGGAAAGCTGAGAAACTCGTTGAAACACATGGAAATTG 1012
||||||||| ||||||||||||||| |||||| ||||||| |||||||| ||||||| ||
Sbjct 959 CAGACGGCTTTTCGGGAGCTTGCGGGAAGCTGCGAAACTCCTTGAAACATATGGAAACTG 1018
Query 1013 AATTGGGTAAAAGATGTGAAGCAGAGCTAGTCGTTGAAATGCAGAATGTTACTCTTGGCA 1072
|||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 1019 AATTGGATAAAAGATGTGAAGCTGAGCTAGTAGTTGAAATGCAGAATGTTACTCTTGACA 1078
Query 1073 ATTAGAAAGAGTTTGGATTTTGCAATTGAGtttttttttGGTTTGTTTCTGTCGGAAAGT 1132
|||| ||||||||||||||||||||||||||| |||||||||| || || ||
Sbjct 1079 GTTAG------TTTGGATTTTGCAATTGAGTTTTTTTTCGGTTTGTTTCAGT-GGCTTGT 1131
Query 1133 GGCTTGT-GCCTTTAGCATTCATGTAATGTTCAATGTGTTGCATACGTT 1180
| ||||| | | | ||||||| ||||||||||||||||| | |||||
Sbjct 1132 GTCTTGTAG--TA-A-CATTCATCTAATGTTCAATGTGTTGTACACGTT 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5