BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472549
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22985.1 | Symbols: | Integrase-type DNA-binding superfamil... 562 1e-159
> AT1G22985.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:8135213-8135920 REVERSE LENGTH=708
Length=708
Score = 562 bits (304), Expect = 1e-159
Identities = 455/521 (87%), Gaps = 37/521 (7%)
Strand=Plus/Plus
Query 3 GGAAGCAACCGATTCTTCAAGCAGCGAAGACGAATCACCGCCG---TCACGCCGTCGAGG 59
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 131 GGAAGCAACCGATTCTTCAAGCAGCGAAGACGAGTCACCACCGTCATCACGCCGTCGAGG 190
Query 60 TAAGAAGCTAGTCAAGGAAATCGTCATCGATCCTTCTGATCCCCCGGAGGTCGGAAAAAC 119
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 191 TAAGAAGCTAGTCAAGGAAATCGTAATCGATCATTCTGATCCCCCGGAGGTCGGAAAAAC 250
Query 120 TCGGTTTAAAATCAGGATTCCGGCGAGGTAT-CTTGCTCCGAAGACTAC-A--ACGAATA 175
|||||| ||||||||||||||||||| || | |||||| ||| || ||| | ||||||
Sbjct 251 TCGGTTCAAAATCAGGATTCCGGCGA-GTTTACTTGCTGCGAGGAATACGACGGCGAATA 309
Query 176 AGAAGAAGTTCCGTGGCGTGAGGCAGAGACCATGGGGGAAGTGGGCGGCTGAGATCAGAT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 310 AGAAGAAGTTCCGTGGCGTGAGGCAGAGACCATGGGGGAAGTGGGCGGCTGAGATTAGAT 369
Query 236 GTGGTAGAGCTCACGGCGGTGGTAAAGGAAGACCTCAACGTGTTTGGCTTGGGACTTTTG 295
||||||||| | | |||||||||||| |||| |||||||||| |||||||
Sbjct 370 GTGGTAGAG-T--------T---AAAGGAAGACCTGAACGAATTTGGCTTGGAACTTTTG 417
Query 296 AAACAGCTGAAGAAGCTGCTCTTGCTTATGACAACGCTGCCATTCAGCTT-ATTGGACCT 354
||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||
Sbjct 418 AAACAGCTGAAGAAGCTGCTCTTGCTTATGATAACGCTGCGATTCAG-TTGATTGGACCT 476
Query 355 GATGCTCCGACTAATTTTCGCCGTCCTGATGTTGATTCTCCGGTGGTGAA---GCAAGAT 411
||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||
Sbjct 477 GATGCGCCGACTAATTTTGGCCGTCCTGATGTTGATTCTGCGGTGGTGAAAAAGCAAGAT 536
Query 412 TCCGATGCTGGTGGTGCTTCTGCAGCTTGTGGTGAAGATGTTTGATTTTCTTGGTTT-TA 470
|| |||||| |||||| | || || || |||| ||||||||||||||| ||| ||
Sbjct 537 TCTGATGCTAGTGGTGGT---GC---TTCTGAAGAAGTTGTTTGATTTTCTTG-TTTATA 589
Query 471 ACTAACTT-GCAAGGTTACTTTT-TG-ATCATCTTGCTTTT 508
|||||||| |||||||||||||| | |||||| | |||||
Sbjct 590 ACTAACTTTGCAAGGTTACTTTTGTTTATCATCAT-CTTTT 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5