BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472550
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22990.1 | Symbols: HIPP22 | Heavy metal transport/detoxific... 852 0.0
> AT1G22990.1 | Symbols: HIPP22 | Heavy metal transport/detoxification
superfamily protein | chr1:8139165-8140202 FORWARD
LENGTH=672
Length=672
Score = 852 bits (461), Expect = 0.0
Identities = 561/608 (92%), Gaps = 11/608 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGCTCTCGATTCTCTTTCTGAGTATTTCTCTAATCATTTCTACGTCTCAATAAGA 60
|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 57 ATGGGAGCTCTCAATTATCTTTCTGAGTATTTCTCTAACCATTTCTACGTCTCAATACGA 116
Query 61 AAACGGAGGAAGCGTAAACTCATGCAGACAGTGAATATAAAGGTGAAGATCGACTGTGAC 120
||||||| ||| |||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 117 AAACGGAAGAAACGTAAAGTCATGCAGACGGTGAATATTAAGGTGAAGATCGACTGTGAC 176
Query 121 GGATGCGAACGCAAAATCAAGAACGCTGTTTCCTCCATGAAAGGAGCAAAATCAGTGGAA 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 177 GGATGCGAACGCAAAATCAAGAACGCTGTTTCCTCCATCAAAGGAGCAAAATCAGTGGAA 236
Query 181 GTGAACAGAAAGATGCACAAAGTAACGGTGAGTGGCTACGTTGATCCAAAGAAAGTGCTG 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 237 GTGAACAGAAAGATGCACAAAGTAACGGTGAGTGGCTACGTTGATCCCAAGAAAGTGCTG 296
Query 241 AAGAGAGTGCAGAGCACTGGCAAGAAGAAAGCTGAGCTGTGGCCGTACGTTCCGTACACA 300
|||| ||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||
Sbjct 297 AAGACAGTGCAGAGCACTGGGAAAAAGAAAGCTGAGCTGTGGCCGTATGTTCCATACACA 356
Query 301 ATGGTGGCTTATCCGTACGCTGCTGGAGCTTACGACAAGAAAGCCCCACCGGGGTTTGTG 360
|||||||||||||| || || || |||||||||||||||| |||||| ||||| ||||||
Sbjct 357 ATGGTGGCTTATCCATATGCCGCCGGAGCTTACGACAAGAGAGCCCCGCCGGGTTTTGTG 416
Query 361 AGGAAATCGGAGCACGCTCAGGCGCAGCCGGGAAGTACTGACGATAAGCTCATGTCCCTA 420
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGGAAGTCGGAGCAGGCTCAGGCGCAGCCGGGAAGTACTGACGATAAGCTCATGTCCCTC 476
Query 421 TTTAGCGACGAGAACCCTAACGCCTGCACCGTTATGTGAATAAAGTATAGATAGCAAGTT 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 477 TTTAGCGACGAGAACCCTAACGCCTGCACCGTTATGTGAATAA-GTATAGATAGCATG-- 533
Query 481 AGCAACCGATTGTTGTATAATTAGTAATGTATAACGTTTTATAAAGTTTA--TAGTGGAA 538
||| | ||| ||| |||||| ||||||||||||||||||| ||||| | || |||||
Sbjct 534 AGC--C-GAT-GTT--ATAATTTGTAATGTATAACGTTTTATGAAGTTAAAGTACTGGAA 587
Query 539 TCTTTTTTGTTACTGTATTAAGTCAGAAGCAAATCAACATATAGTAATTACTCTGCGTTT 598
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 588 CCTTTTTTGTTACTGTATTATGTGAGAAGCAACGCAACATATAGTAATTACTCTGCGTTT 647
Query 599 AACTAGTA 606
||||||||
Sbjct 648 AACTAGTA 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5