BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472554

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23040.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...  1000    0.0  


> AT1G23040.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr1:8164959-8165862 FORWARD LENGTH=904
Length=904

 Score = 1000 bits (541),  Expect = 0.0
 Identities = 702/771 (91%), Gaps = 45/771 (6%)
 Strand=Plus/Plus

Query  1    TACAAAACTCTGTTTTTCATTTTCTCTTTGATCAAAAT-------CGCCGAT--C-A---  47
            ||||||||||||||||| ||||||||||||||||||||       |||||||  | |   
Sbjct  1    TACAAAACTCTGTTTTTGATTTTCTCTTTGATCAAAATCAAAAAACGCCGATCACAAGTT  60

Query  48   CAC--CATGCCGGGAAATTCTCACCGCCGGGGATCCGTCGTCATATTCACCGTGATGATG  105
            |||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  61   CACAACATGCCGGGAAATTCTCACCGCCGGGGATCCGACGTCATATTCACCGTGATGATG  120

Query  106  ATCACGTTGCTGACGTGTCCAATAATCATCAA-GGCTTCATCATCATCAGATGCTTCTTT  164
            ||| | |||||||||||||||| | ||||||| || ||||||||||||||||||||||||
Sbjct  121  ATCGCCTTGCTGACGTGTCCAACACTCATCAACGG-TTCATCATCATCAGATGCTTCTTT  179

Query  165  AGCAGCAAGAAAGCTCGATGAGGTTGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAA  224
            || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  180  AGAAGCAAGAAAGCTCGATGAGGTCGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAA  239

Query  225  CCCTCCTCCGCCGTCTCCTCCACCACCGTCTCCGCCACCACCTGCGTGTCCTCCACCGCC  284
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  240  CCCTCCTCCGCCATCTCCTCCACCACCGTCTCCGCCACCACCTGCATGTCCTCCACCCCC  299

Query  285  GGCTCTCCCACCGCCTCCGCCGAAGAAAGTCAGTTCCTACTGCCCACCGCCTCCGCCGCC  344
            |||||| |||||||||||||| ||||||||||||||||||||||||||||||   |||||
Sbjct  300  GGCTCTTCCACCGCCTCCGCCTAAGAAAGTCAGTTCCTACTGCCCACCGCCT---CCGCC  356

Query  345  GGCTAATTTCTTGTACATCACCGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATT  404
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  357  GGCTAATTTCTTGTACATCACGGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATT  416

Query  405  CGGAGCGGCCGCCGGAAAAAGTTTTATGTTGGTGAAGCTCTCCGGTCTAATCGCGTTTGG  464
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  417  CGGAGCGGCCGCCGGAAAAAGTTTTATGGTGGTGAAGCTCTCCGGTCTAATCGCGTTTGG  476

Query  465  AATTGTGGGGTTCTTGATTCTTTGAAATTAACATGATCGGAGaaaaaaaa-aTTTGAAGA  523
            |||| ||| |||| |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  477  AATTATGGCGTTCCTGATTCTTTGAAATTAACATGATCGGAGAAAAAATATATTTGAAGA  536

Query  524  TCTGTTGGTATGTTTCAGATACTTTTTAATTAGTTGTTGAAGAACTTTATTGATCGTTGG  583
            ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  537  TCTGTTGGTATGTTTTAGATACTTTTTAATTAGTTGTTGAAGAACGTTATTGATGGTTGG  596

Query  584  TTAATAATTTTTCTAGCTAGGATCATATATGTTTCA-TCATATTTTCCTATATCCAAATT  642
            ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct  597  TTAATAATTTTTCTAGCTAGGATTATATATGTTTCAAT-ATATTTTCCTATATCCAAATT  655

Query  643  TTCTAATGGTTTTTTAACCAAGTTAATAAGGTA--A--------------G---AGA-AA  682
            |||||||||||||| |||||| |||||||||||  |              |   ||| ||
Sbjct  656  TTCTAATGGTTTTT-AACCAAATTAATAAGGTACGAATACTAAAATTTCTGTTCAGAGAA  714

Query  683  -TATGTAAATTCTAGAAATGTATTCTCTTGATGTGATATGTTCTCTGTTCA  732
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  715  ATATGTAAATTCTAGAAATGTATTCTCTTGATGTGATATGTTCTCTGTTCA  765


 Score =  182 bits (98),  Expect = 6e-45
 Identities = 112/118 (95%), Gaps = 3/118 (3%)
 Strand=Plus/Plus

Query  720  TGTTCTCTGTTCAACTTGCCA-T--TGAATTGATTCTCAAAATTGGAAAGTTTTCTTTGT  776
            |||||| |||||||||||||| |  |||||||||||||||||||||||||||||||||||
Sbjct  786  TGTTCTGTGTTCAACTTGCCATTGATGAATTGATTCTCAAAATTGGAAAGTTTTCTTTGT  845

Query  777  GCGGAATAATTTTATGAAAAAGTAAATTGTTCTTAATAAAAGTAAAGATAtttttttt  834
            |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct  846  GCGGAATAATTTTATGAAAAAGCAAATTGTTCTTAATAAAAGTAAAGATAGTTTTTTT  903



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40639424923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5