BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472554 Length=834 Score E Sequences producing significant alignments: (Bits) Value AT1G23040.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1000 0.0 > AT1G23040.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:8164959-8165862 FORWARD LENGTH=904 Length=904 Score = 1000 bits (541), Expect = 0.0 Identities = 702/771 (91%), Gaps = 45/771 (6%) Strand=Plus/Plus Query 1 TACAAAACTCTGTTTTTCATTTTCTCTTTGATCAAAAT-------CGCCGAT--C-A--- 47 ||||||||||||||||| |||||||||||||||||||| ||||||| | | Sbjct 1 TACAAAACTCTGTTTTTGATTTTCTCTTTGATCAAAATCAAAAAACGCCGATCACAAGTT 60 Query 48 CAC--CATGCCGGGAAATTCTCACCGCCGGGGATCCGTCGTCATATTCACCGTGATGATG 105 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 CACAACATGCCGGGAAATTCTCACCGCCGGGGATCCGACGTCATATTCACCGTGATGATG 120 Query 106 ATCACGTTGCTGACGTGTCCAATAATCATCAA-GGCTTCATCATCATCAGATGCTTCTTT 164 ||| | |||||||||||||||| | ||||||| || |||||||||||||||||||||||| Sbjct 121 ATCGCCTTGCTGACGTGTCCAACACTCATCAACGG-TTCATCATCATCAGATGCTTCTTT 179 Query 165 AGCAGCAAGAAAGCTCGATGAGGTTGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAA 224 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 180 AGAAGCAAGAAAGCTCGATGAGGTCGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAA 239 Query 225 CCCTCCTCCGCCGTCTCCTCCACCACCGTCTCCGCCACCACCTGCGTGTCCTCCACCGCC 284 |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 240 CCCTCCTCCGCCATCTCCTCCACCACCGTCTCCGCCACCACCTGCATGTCCTCCACCCCC 299 Query 285 GGCTCTCCCACCGCCTCCGCCGAAGAAAGTCAGTTCCTACTGCCCACCGCCTCCGCCGCC 344 |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 300 GGCTCTTCCACCGCCTCCGCCTAAGAAAGTCAGTTCCTACTGCCCACCGCCT---CCGCC 356 Query 345 GGCTAATTTCTTGTACATCACCGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATT 404 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 357 GGCTAATTTCTTGTACATCACGGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATT 416 Query 405 CGGAGCGGCCGCCGGAAAAAGTTTTATGTTGGTGAAGCTCTCCGGTCTAATCGCGTTTGG 464 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 417 CGGAGCGGCCGCCGGAAAAAGTTTTATGGTGGTGAAGCTCTCCGGTCTAATCGCGTTTGG 476 Query 465 AATTGTGGGGTTCTTGATTCTTTGAAATTAACATGATCGGAGaaaaaaaa-aTTTGAAGA 523 |||| ||| |||| |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 477 AATTATGGCGTTCCTGATTCTTTGAAATTAACATGATCGGAGAAAAAATATATTTGAAGA 536 Query 524 TCTGTTGGTATGTTTCAGATACTTTTTAATTAGTTGTTGAAGAACTTTATTGATCGTTGG 583 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 537 TCTGTTGGTATGTTTTAGATACTTTTTAATTAGTTGTTGAAGAACGTTATTGATGGTTGG 596 Query 584 TTAATAATTTTTCTAGCTAGGATCATATATGTTTCA-TCATATTTTCCTATATCCAAATT 642 ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| Sbjct 597 TTAATAATTTTTCTAGCTAGGATTATATATGTTTCAAT-ATATTTTCCTATATCCAAATT 655 Query 643 TTCTAATGGTTTTTTAACCAAGTTAATAAGGTA--A--------------G---AGA-AA 682 |||||||||||||| |||||| ||||||||||| | | ||| || Sbjct 656 TTCTAATGGTTTTT-AACCAAATTAATAAGGTACGAATACTAAAATTTCTGTTCAGAGAA 714 Query 683 -TATGTAAATTCTAGAAATGTATTCTCTTGATGTGATATGTTCTCTGTTCA 732 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 ATATGTAAATTCTAGAAATGTATTCTCTTGATGTGATATGTTCTCTGTTCA 765 Score = 182 bits (98), Expect = 6e-45 Identities = 112/118 (95%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 720 TGTTCTCTGTTCAACTTGCCA-T--TGAATTGATTCTCAAAATTGGAAAGTTTTCTTTGT 776 |||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 786 TGTTCTGTGTTCAACTTGCCATTGATGAATTGATTCTCAAAATTGGAAAGTTTTCTTTGT 845 Query 777 GCGGAATAATTTTATGAAAAAGTAAATTGTTCTTAATAAAAGTAAAGATAtttttttt 834 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 846 GCGGAATAATTTTATGAAAAAGCAAATTGTTCTTAATAAAAGTAAAGATAGTTTTTTT 903 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40639424923 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5