BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472554
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23040.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1000 0.0
> AT1G23040.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:8164959-8165862 FORWARD LENGTH=904
Length=904
Score = 1000 bits (541), Expect = 0.0
Identities = 702/771 (91%), Gaps = 45/771 (6%)
Strand=Plus/Plus
Query 1 TACAAAACTCTGTTTTTCATTTTCTCTTTGATCAAAAT-------CGCCGAT--C-A--- 47
||||||||||||||||| |||||||||||||||||||| ||||||| | |
Sbjct 1 TACAAAACTCTGTTTTTGATTTTCTCTTTGATCAAAATCAAAAAACGCCGATCACAAGTT 60
Query 48 CAC--CATGCCGGGAAATTCTCACCGCCGGGGATCCGTCGTCATATTCACCGTGATGATG 105
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CACAACATGCCGGGAAATTCTCACCGCCGGGGATCCGACGTCATATTCACCGTGATGATG 120
Query 106 ATCACGTTGCTGACGTGTCCAATAATCATCAA-GGCTTCATCATCATCAGATGCTTCTTT 164
||| | |||||||||||||||| | ||||||| || ||||||||||||||||||||||||
Sbjct 121 ATCGCCTTGCTGACGTGTCCAACACTCATCAACGG-TTCATCATCATCAGATGCTTCTTT 179
Query 165 AGCAGCAAGAAAGCTCGATGAGGTTGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAA 224
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAGCAAGAAAGCTCGATGAGGTCGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAA 239
Query 225 CCCTCCTCCGCCGTCTCCTCCACCACCGTCTCCGCCACCACCTGCGTGTCCTCCACCGCC 284
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 240 CCCTCCTCCGCCATCTCCTCCACCACCGTCTCCGCCACCACCTGCATGTCCTCCACCCCC 299
Query 285 GGCTCTCCCACCGCCTCCGCCGAAGAAAGTCAGTTCCTACTGCCCACCGCCTCCGCCGCC 344
|||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 300 GGCTCTTCCACCGCCTCCGCCTAAGAAAGTCAGTTCCTACTGCCCACCGCCT---CCGCC 356
Query 345 GGCTAATTTCTTGTACATCACCGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATT 404
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGCTAATTTCTTGTACATCACGGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATT 416
Query 405 CGGAGCGGCCGCCGGAAAAAGTTTTATGTTGGTGAAGCTCTCCGGTCTAATCGCGTTTGG 464
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 CGGAGCGGCCGCCGGAAAAAGTTTTATGGTGGTGAAGCTCTCCGGTCTAATCGCGTTTGG 476
Query 465 AATTGTGGGGTTCTTGATTCTTTGAAATTAACATGATCGGAGaaaaaaaa-aTTTGAAGA 523
|||| ||| |||| |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 477 AATTATGGCGTTCCTGATTCTTTGAAATTAACATGATCGGAGAAAAAATATATTTGAAGA 536
Query 524 TCTGTTGGTATGTTTCAGATACTTTTTAATTAGTTGTTGAAGAACTTTATTGATCGTTGG 583
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 537 TCTGTTGGTATGTTTTAGATACTTTTTAATTAGTTGTTGAAGAACGTTATTGATGGTTGG 596
Query 584 TTAATAATTTTTCTAGCTAGGATCATATATGTTTCA-TCATATTTTCCTATATCCAAATT 642
||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 597 TTAATAATTTTTCTAGCTAGGATTATATATGTTTCAAT-ATATTTTCCTATATCCAAATT 655
Query 643 TTCTAATGGTTTTTTAACCAAGTTAATAAGGTA--A--------------G---AGA-AA 682
|||||||||||||| |||||| ||||||||||| | | ||| ||
Sbjct 656 TTCTAATGGTTTTT-AACCAAATTAATAAGGTACGAATACTAAAATTTCTGTTCAGAGAA 714
Query 683 -TATGTAAATTCTAGAAATGTATTCTCTTGATGTGATATGTTCTCTGTTCA 732
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATATGTAAATTCTAGAAATGTATTCTCTTGATGTGATATGTTCTCTGTTCA 765
Score = 182 bits (98), Expect = 6e-45
Identities = 112/118 (95%), Gaps = 3/118 (3%)
Strand=Plus/Plus
Query 720 TGTTCTCTGTTCAACTTGCCA-T--TGAATTGATTCTCAAAATTGGAAAGTTTTCTTTGT 776
|||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 786 TGTTCTGTGTTCAACTTGCCATTGATGAATTGATTCTCAAAATTGGAAAGTTTTCTTTGT 845
Query 777 GCGGAATAATTTTATGAAAAAGTAAATTGTTCTTAATAAAAGTAAAGATAtttttttt 834
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 846 GCGGAATAATTTTATGAAAAAGCAAATTGTTCTTAATAAAAGTAAAGATAGTTTTTTT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5