BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472555
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23052.1 | Symbols: | | chr1:8168443-8169267 REVERSE LENGT... 1053 0.0
AT1G23050.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1053 0.0
> AT1G23052.1 | Symbols: | | chr1:8168443-8169267 REVERSE LENGTH=825
Length=825
Score = 1053 bits (570), Expect = 0.0
Identities = 708/772 (92%), Gaps = 19/772 (2%)
Strand=Plus/Minus
Query 1 ATTAGTCCCAATAATTCACAAGACAAGTGTCTTCTAGCTAGAGTCCACACCTTCCAACTA 60
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 ATTCGTTCCAATAATTCACAAGACAAGTGTCTTCTAGCTAGAGTCCACACCTTCCAACTA 758
Query 61 AGCTTTTGCCAAAAAA--CTTATCTTAATTTACTTTCTCTTATCCAAAATTCTTTGTTTA 118
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 757 AGCTTTTGCCAAAAAAAACTTATCTTAATTTACTTTCTCTTATCCAAAGTTCTTTGTTTA 698
Query 119 CCATTTaaaaaaaaaaaaGAACCATTCTTTCACCAAGTTCTTGTAAAACAAAACAAAAGA 178
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CCATT-AAAAAAAAA---GAACCATTCTTTCACCAAGTTCTTGTAAAACAAAACAAAAGA 642
Query 179 AACCATGAACACAAACGATCATGGCCTTCTCCTCTTGAGCTTATTCTTCATCTTTTCTCT 238
|| |||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||
Sbjct 641 AAACATGAACACAAACGATCATGGCCTTCTCTTCTTGACCTTAATCTTCGTCTTTTCTCT 582
Query 239 TGTTTACTTCCCCTACTTAACCATGTCCGAGACGCCATGTCCGTACCCGTGTTATCCAAC 298
||||||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||
Sbjct 581 TGTTTACTTCCCCTACTTAGTCATATCCGACACACCATGTCCCTACCCGTGTTATCCAAC 522
Query 299 GCCGCCTATTGGCGGCAGTTCCTCCACGCCCTCCATGACTCAACCACCACCATATCCTCC 358
|||||||||||| || | |||||||| || |||||||||||||||||||||||||||||
Sbjct 521 GCCGCCTATTGGTGGTGGCTCCTCCACACCTTCCATGACTCAACCACCACCATATCCTCC 462
Query 359 TCCAGCCGTTAACTACCCTTCTCCAGCTGGGAATTTACCGAATTATCCTCCTCCGGTTGG 418
||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 461 TCCAGGCGTTAACTACCCTACTCCAGCTGGGAATTTACCAAATTACCCTCCTCCGGTTGG 402
Query 419 AAATATACCAAACTATCCTTCTCCACCATATGGTGGCGGAGACGGTAGTGGCAGCAACTT 478
|||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 401 GAATATACCTAACTACCCTTCTCCACCGTATGGTGGCGGAGACAGTAGTGGCAGCAGCTT 342
Query 479 CTATGGTCCTCCACCGCCGGATGCTATCTTGCCGTACTTCCCTTACTACTTCAGAAAACC 538
|||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 341 CTATGGCCCTCCACCGCCGAATGCTATTTTGCCGTACTTCCCTTACTACTTTAGAAAACC 282
Query 539 TCCTCACCAAACGGATCAAACCTCGTCGTCTTCACACGTGGCGGTTGCAGGGAAATTGAC 598
||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||
Sbjct 281 TCCTCACCAAACGGATCAAACGTCCTCGTCTTCACACGTGGCGGTTCCAGGGAAATGGAC 222
Query 599 GGTGAGGATCGTAGCCGTGGCAAATCTTGTGGTGGTTGGAGTTCTCGGTAACATTTTGTT 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 221 GGTGAGGATCGTAGCCGTGGCAAATCTTGTGGTTGTTGGAGTTCTCGGTAACATTCTGTT 162
Query 659 TATAACTTAAT---TA-GTAACTCTTGTGGAAGTTTTTCT-TAT---AT-TATGTAAGAA 709
||||||||||| || ||||||||||||| ||||||| | | | || |||||||||
Sbjct 161 TATAACTTAATAAATACGTAACTCTTGTGGGAGTTTTTTTGTGTGTTATGTATGTAAGAG 102
Query 710 ATATTGTAATACTTTAGAATCA-ACTGCAGCGGAACTAG-AGCAGAAAAAAT 759
|||||||||||||||||||| | |||| ||||||||| | ||||||||||||
Sbjct 101 ATATTGTAATACTTTAGAAT-ATACTGAAGCGGAACT-GTAGCAGAAAAAAT 52
> AT1G23050.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:8168443-8169267 FORWARD LENGTH=825
Length=825
Score = 1053 bits (570), Expect = 0.0
Identities = 708/772 (92%), Gaps = 19/772 (2%)
Strand=Plus/Plus
Query 1 ATTAGTCCCAATAATTCACAAGACAAGTGTCTTCTAGCTAGAGTCCACACCTTCCAACTA 60
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 ATTCGTTCCAATAATTCACAAGACAAGTGTCTTCTAGCTAGAGTCCACACCTTCCAACTA 68
Query 61 AGCTTTTGCCAAAAAA--CTTATCTTAATTTACTTTCTCTTATCCAAAATTCTTTGTTTA 118
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 69 AGCTTTTGCCAAAAAAAACTTATCTTAATTTACTTTCTCTTATCCAAAGTTCTTTGTTTA 128
Query 119 CCATTTaaaaaaaaaaaaGAACCATTCTTTCACCAAGTTCTTGTAAAACAAAACAAAAGA 178
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CCATT-AAAAAAAAA---GAACCATTCTTTCACCAAGTTCTTGTAAAACAAAACAAAAGA 184
Query 179 AACCATGAACACAAACGATCATGGCCTTCTCCTCTTGAGCTTATTCTTCATCTTTTCTCT 238
|| |||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||
Sbjct 185 AAACATGAACACAAACGATCATGGCCTTCTCTTCTTGACCTTAATCTTCGTCTTTTCTCT 244
Query 239 TGTTTACTTCCCCTACTTAACCATGTCCGAGACGCCATGTCCGTACCCGTGTTATCCAAC 298
||||||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||
Sbjct 245 TGTTTACTTCCCCTACTTAGTCATATCCGACACACCATGTCCCTACCCGTGTTATCCAAC 304
Query 299 GCCGCCTATTGGCGGCAGTTCCTCCACGCCCTCCATGACTCAACCACCACCATATCCTCC 358
|||||||||||| || | |||||||| || |||||||||||||||||||||||||||||
Sbjct 305 GCCGCCTATTGGTGGTGGCTCCTCCACACCTTCCATGACTCAACCACCACCATATCCTCC 364
Query 359 TCCAGCCGTTAACTACCCTTCTCCAGCTGGGAATTTACCGAATTATCCTCCTCCGGTTGG 418
||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 365 TCCAGGCGTTAACTACCCTACTCCAGCTGGGAATTTACCAAATTACCCTCCTCCGGTTGG 424
Query 419 AAATATACCAAACTATCCTTCTCCACCATATGGTGGCGGAGACGGTAGTGGCAGCAACTT 478
|||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 425 GAATATACCTAACTACCCTTCTCCACCGTATGGTGGCGGAGACAGTAGTGGCAGCAGCTT 484
Query 479 CTATGGTCCTCCACCGCCGGATGCTATCTTGCCGTACTTCCCTTACTACTTCAGAAAACC 538
|||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 485 CTATGGCCCTCCACCGCCGAATGCTATTTTGCCGTACTTCCCTTACTACTTTAGAAAACC 544
Query 539 TCCTCACCAAACGGATCAAACCTCGTCGTCTTCACACGTGGCGGTTGCAGGGAAATTGAC 598
||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||
Sbjct 545 TCCTCACCAAACGGATCAAACGTCCTCGTCTTCACACGTGGCGGTTCCAGGGAAATGGAC 604
Query 599 GGTGAGGATCGTAGCCGTGGCAAATCTTGTGGTGGTTGGAGTTCTCGGTAACATTTTGTT 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 605 GGTGAGGATCGTAGCCGTGGCAAATCTTGTGGTTGTTGGAGTTCTCGGTAACATTCTGTT 664
Query 659 TATAACTTAAT---TA-GTAACTCTTGTGGAAGTTTTTCT-TAT---AT-TATGTAAGAA 709
||||||||||| || ||||||||||||| ||||||| | | | || |||||||||
Sbjct 665 TATAACTTAATAAATACGTAACTCTTGTGGGAGTTTTTTTGTGTGTTATGTATGTAAGAG 724
Query 710 ATATTGTAATACTTTAGAATCA-ACTGCAGCGGAACTAG-AGCAGAAAAAAT 759
|||||||||||||||||||| | |||| ||||||||| | ||||||||||||
Sbjct 725 ATATTGTAATACTTTAGAAT-ATACTGAAGCGGAACT-GTAGCAGAAAAAAT 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5