BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472556
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23060.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1722 0.0
> AT1G23060.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT1G70950.1);
Has 449 Blast hits to 419 proteins in 98
species: Archae - 0; Bacteria - 40; Metazoa - 139; Fungi - 21;
Plants - 158; Viruses - 3; Other Eukaryotes - 88 (source:
NCBI BLink). | chr1:8170755-8172992 REVERSE LENGTH=1452
Length=1452
Score = 1722 bits (932), Expect = 0.0
Identities = 1298/1465 (89%), Gaps = 64/1465 (4%)
Strand=Plus/Plus
Query 1 AGCTTTCTTTGCCAAATCTGAATTCGACGTTTTAATTACAGACTTCTCTTGTCCAAGTTC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AGCTTTCTTTGCCAAATCTGAATTCGACGTTTTACTTACAGACTTCTCTTGTCCAAGTTC 60
Query 61 CTCATTCGTGCTCCAGAGTTAC-T--TC--A-TC--A-A--A-----------TT--TGC 96
||||||||||||||| |||||| | || | || | | | || |||
Sbjct 61 CTCATTCGTGCTCCAAAGTTACTTCATCAAATTCGTATACTACTCTCTGTTTTTTAATGC 120
Query 97 TCTTTGCT-CTACATACGGCACT-TTACTAGATTATATGATGGCGGGAGAGGTTCAAGAG 154
|||||||| | |||||||| ||| || |||||||||| |||||||||||||| |||||
Sbjct 121 TCTTTGCTCCAACATACGG-ACTCTT-TTAGATTATATAATGGCGGGAGAGGTCCAAGAT 178
Query 155 CCATTTAACCTAAGCCTTTTGGAGAATTCTATACACTCGGGATCAGTATCATTTGGAAGA 214
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCGTTTAACCTAAGCCTTTTGGAGAATTCTATACACTCGGGATCAGTATCATTTGGAAGA 238
Query 215 TTCGAGAAAGAATCTTTATCATGGGAGAAGAGATCATCCTTCTCTCACAACAGATATCTA 274
|||||||| ||||||||||||||||||| ||||||||||||||||| ||| | ||||||
Sbjct 239 TTCGAGAAGGAATCTTTATCATGGGAGAGGAGATCATCCTTCTCTCGCAATATATATCTT 298
Query 275 GAAGAGGCTGAGAAG-TTCTCTAAACCAGGCTCTGTTACTCTGATGAGAGCTCATTTCGA 333
|||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 299 GAAGAGGCAGAG-AGATTCTCTAAACCAGGCTCTGTTACTCAGATGAGAGCTCATTTTGA 357
Query 334 GGCGCATTTTAAGAAGAAAGGGATTCGGTTTCCGAGTTCTGTTGAAGCTCAAACATGGGG 393
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 358 GGCGCATTTTAAGAAGAAAGGGATCCGTTTTCCGAGTTCTGTTGAATCTCAAACATGGGG 417
Query 394 AGAAGTTGTTCATCATCAAACTTGTACTGAG-AA-A-G---A----T--GAGAACACAAG 441
||||||||||||||||||||||||||||||| || | | | | |||||||||||
Sbjct 418 AGAAGTTGTTCATCATCAAACTTGTACTGAGAAAGATGAAAATTTGTGGGAGAACACAAG 477
Query 442 TCAATTTGGTGATTCTTGTGTGAGTTATGACGAGACGATTCTTGTGAATTCTGATGATGA 501
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 TCAATTCGGTGATTCTTGTGTGAGTTTTGACGAGACGATTCTTGTGAATTCTGATGATGA 537
Query 502 TGTTGATACTTCTATTTCTGTTGCTTTGGAGAAAACTGAAATTGGCCAG-AGTGAAGATG 560
|||| ||||||||||||||||||||||||||| |||||| ||||| | | | ||||||||
Sbjct 538 TGTTCATACTTCTATTTCTGTTGCTTTGGAGAGAACTGATATTGGTC-GCATTGAAGATG 596
Query 561 AAAAAGAAACATCATCTTCTTCCTCCGCAACTAGATTGACGCCTTTGAAAAATGTCCACA 620
||||||||||| ||||||||||||||||||||||| || ||||||||||||||| || |
Sbjct 597 AAAAAGAAACAAAATCTTCTTCCTCCGCAACTAGATCGAAGCCTTTGAAAAATGTTCAAA 656
Query 621 AATCT-GTTCCTTGTTC--CG-CGACCAAAGCTTCTACAAAGAAGCATGTTGTCATAGCA 676
|| || | ||||| ||| || ||| |||| |||||| |||||||||||||||||| ||
Sbjct 657 AAGCTCG-TCCTTATTCTGCGACGAATAAAGATTCTACCAAGAAGCATGTTGTCATACCA 715
Query 677 AAGGGATCTTCTCCAAGTTGTAATACTAAAACCAGTATTGACACTAAGAGACAAAAGGAA 736
||||||| ||||||||||| |||| ||||||| ||| |||||||||||||||||||||||
Sbjct 716 AAGGGATATTCTCCAAGTTCTAATGCTAAAACAAGTGTTGACACTAAGAGACAAAAGGAA 775
Query 737 TTGAAGCCTAAGAGGGTAGTTAAAACCATAGCATCTCAAGCTCCAACAACATCAAAGAAA 796
||||||||||||||| | ||| ||||| | |||| |||||||||| | ||||||||||||
Sbjct 776 TTGAAGCCTAAGAGGATTGTTGAAACCGTTGCATGTCAAGCTCCAGCTACATCAAAGAAA 835
Query 797 TCTGAGATCCTAACAACTCCTTTGGTGGCTACAAGAGGAAAGAGAACAACTACTAATGGT 856
||||||||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||
Sbjct 836 ACTGAGATCCTAAC---TCCTTTGTTGGCTACAAGAGAAAAGAAAACAAGTACTAATGGT 892
Query 857 TTCAGTTT-CAGAAGTAATGAACGAGCCGGGAAGAGGAAAGAGGAAAAGGTAAAAGCTGT 915
|| ||||| | ||||||| ||||| |||| ||||| ||||||||| ||||| |||||||
Sbjct 893 TTTAGTTTAC-GAAGTAACGAACGGGCCGAGAAGAAGAAAGAGGAGAAGGTGGAAGCTGT 951
Query 916 AGTGCCTAAAGATCTTAACTTAAAAGCAAGACCATTGCCTAAAATCACACAAACTAGACC 975
|| | ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 952 GGTACGTAAAGCTCTTAACTTAAAAGCAAGACCATTGCCTAAAAGCACACAAGCTAGACC 1011
Query 976 TCAACACACGCCAACAGGTCAGGCAAAGGCAAAGGCAAAAGCAAGAGATGATCACTCATC 1035
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1012 TCAACACACGTCAACAGGTCAGGCAAAGGCAAAGGCAAAGGCAAGAGATGATCACTCATC 1071
Query 1036 TATAGCTAGTTGTGATCGGTCATTGGCAAATGGCATGGCCAAGAGTAAGCTCATTATTAA 1095
|| |||||||||||||||||||||| ||||| | |||||||| |||||| ||||||||||
Sbjct 1072 TACAGCTAGTTGTGATCGGTCATTGACAAATAGAATGGCCAAAAGTAAGGTCATTATTAA 1131
Query 1096 CAAACAGAAGGCGGATATACAGAGGAGTCTAAACGGAATTCGACCAAAGACAAGCGATCA 1155
|||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||
Sbjct 1132 CAAACAGAAGGCGGATATGCAGAGAAGTCTAAATGGAATTCGGCCAAAGACAAGCGACCA 1191
Query 1156 GACCGCGAGAAACAATAC-ACACAGAAGGAGTTTACCGGTTAGGCGTTCTGCGGTTGAGG 1214
|||||||||||||| || | ||| |||||||||| |||||||||| ||||||||| |||
Sbjct 1192 GACCGCGAGAAACAGCACGA-ACATAAGGAGTTTAGCGGTTAGGCGCTCTGCGGTTCAGG 1250
Query 1215 TTGCTTTGTGAGCTATT-CAATGTCTCTGCTTTTGTTCTTTAGTACTAT-GGCCTCAATT 1272
||||||||||||| ||| || |||||||||||||||||||||||||||| |||||||| |
Sbjct 1251 TTGCTTTGTGAGCAATTTCACTGTCTCTGCTTTTGTTCTTTAGTACTATTGGCCTCAAAT 1310
Query 1273 G-GTTCTTTGTGTTTTTGTTTCTATGCTGTAATGAGTAGAATGTTATATCATAGAAACGT 1331
| || |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1311 GTGT-CTTTGTGTTTGTGTTTCTAGGCTGTAATGAGTAGAATGTTACATCATAGAAACGC 1369
Query 1332 AAAATACAAATAAACAATCAGAACCTATGTAACCTTGTTTTAGAATCACCATTTCACCTA 1391
|||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |
Sbjct 1370 AAAATACAAATAAACAATCAGAACCTATGTAACCTTATGTTAGAATCACCATTGCACC-A 1428
Query 1392 T-ACAT-TTCTAAAAGCTTATTACT 1414
| | || || ||||||||||| |||
Sbjct 1429 TTAAATCTT-TAAAAGCTTATAACT 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5