BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472559
Length=2198
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23080.1 | Symbols: PIN7, ATPIN7 | Auxin efflux carrier fami... 3417 0.0
AT1G70940.1 | Symbols: PIN3, ATPIN3 | Auxin efflux carrier fami... 534 1e-150
AT1G73590.1 | Symbols: PIN1, ATPIN1 | Auxin efflux carrier fami... 359 7e-98
> AT1G23080.1 | Symbols: PIN7, ATPIN7 | Auxin efflux carrier family
protein | chr1:8180577-8183570 REVERSE LENGTH=2215
Length=2215
Score = 3417 bits (1850), Expect = 0.0
Identities = 2099/2217 (95%), Gaps = 25/2217 (1%)
Strand=Plus/Plus
Query 1 AAAAATCATCAAAtcttctccttct-tctctctctctcACACACTCACTAGCTTCTCTGT 59
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATCATCAAATCTTCTCCTTCTCTCTCTCTCTCTCACACACTCACTAGCTTCTCTGT 60
Query 60 TAAAAGCTTCCGTCATCACACAGAGCACATAGACTGACACTAACTCACTTCCTAACGGTT 119
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 61 TAAAAGCTTCCGTCATCACATAGAGAACAGAGACTGACACTAACTCACTTCCTAACGGTT 120
Query 120 TCCACACTCAAAATTACACTTTTGCCACTCCGGCCCTCAAC-A-ATGATCACATGGCACG 177
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 121 TCCACACTCAAAATTACACTTTTGCCACTCCGGCGAACAACAATATGATCACATGGCACG 180
Query 178 ACCTCTACACAGTCCTCACGGCGGTGATACCACTCTACGTAGCCATGATCCTCGCTTACG 237
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCTCTACACCGTCCTCACGGCGGTGATACCACTCTACGTAGCCATGATCCTCGCTTACG 240
Query 238 GCTCCGTCCGGTGGTGGAAAATTTTCTCACCAGACCAATGCTCCGGCATAAACCGCTTCG 297
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 241 GCTCAGTCCGGTGGTGGAAAATCTTCTCACCAGACCAATGTTCCGGCATAAACCGCTTCG 300
Query 298 TCGCCATTTTCGCTGTCCCTCTCCTCTCTTTCCACTTCATCTCCTCCAACAACCCATACG 357
|||| |||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||
Sbjct 301 TCGCTATTTTCGCCGTCCCTCTTCTCTCTTTCCACTTCATCTCCTCAAACAATCCTTACG 360
Query 358 CAATGAATCTCCGATTCATCGCCGCCGATACACTCCAAAAACTAATCATGCTCACTCTCC 417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATGAATCTCCGATTCATCGCAGCCGATACACTCCAAAAACTAATCATGCTCACTCTCC 420
Query 418 TAATCATCTGGGCTAACTTCACTCGCTCCGGTAGTCTCGAATGGAGCATCACAATCTTCT 477
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 TAATCATCTGGGCTAACTTCACTCGCTCCGGTAGTCTTGAATGGAGCATCACAATCTTCT 480
Query 478 CTCTTTCAACACTTCCCAACACTCTCGTTATGGGAATACCTCTCTTGATCGCCATGTACG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTTTCAACACTTCCCAACACTCTCGTTATGGGAATACCTCTCTTGATCGCCATGTACG 540
Query 538 GCGAATATTCCGGCTCACTCATGGTTCAGATCGTTGTTCTTCAGTGTATAATATGGTACA 597
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 GAGAATATTCCGGCTCACTCATGGTTCAGATCGTTGTTCTTCAGTGTATAATCTGGTACA 600
Query 598 CGCTTCTTCTCTTTCTTTTCGAATACAGAGGAGCTAAGATCTTGATCATGGAACAGTTCC 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 CGCTTCTTCTCTTTCTTTTCGAATACAGAGGAGCTAAGATCTTGATCATGGAACAGTTTC 660
Query 658 CAGAGACTGGTGCTTCGATTGTATCATTCAAAGTTGAGTCCGATGTTGTTTCTTTAGACG 717
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 661 CAGAGACTGGTGCTTCGATTGTATCGTTCAAAGTTGAGTCCGATGTTGTTTCTTTAGATG 720
Query 718 GACATGATTTTCTTGAAACTGATGCTCAAATCGGTGACGATGGTAAGCTTCATGTTACGG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GACATGATTTTCTTGAAACTGATGCTCAAATCGGTGACGATGGTAAGCTTCATGTTACGG 780
Query 778 TGAGGAAATCAAACGCTTCTCGGAGATCTTTTTACGGTGGTGGTGGTACTAATATGACTC 837
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGAGAAAATCAAACGCTTCTCGGAGATCTTTTTACGGTGGTGGTGGTACTAATATGACTC 840
Query 838 CTCGTCCGTCGAATCTCTCCGGAGCTGAGATTTATAGTCTTAACACTACTCCGAGAGGAT 897
|||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 CTCGTCCGTCTAATCTCACCGGAGCTGAGATTTATAGTCTTAACACTACTCCAAGAGGAT 900
Query 898 CTAACTTCAATCATTCTGATTTTTACTCTATGATGGGATTTCCCGGTGGCCGGCTTTCGA 957
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 CTAACTTCAATCATTCTGATTTTTACTCTATGATGGGGTTTCCCGGTGGCCGGCTTTCGA 960
Query 958 ACTTTGGTCCGGCGGATATGTACTCTGTTCAGTCCTCGAGAGGGCCTACTCCTAGACCTT 1017
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 961 ACTTTGGTCCGGCGGATATGTACTCTGTTCAGTCCTCGAGAGGACCTACTCCTAGACCTT 1020
Query 1018 CGAATTTTGAGGAGAATTGTGCTATGGCTTCTTCGCCTAGATTCGGGTATTACCCGGGAG 1077
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 CGAATTTTGAGGAGAGTTGTGCTATGGCTTCTTCGCCAAGATTCGGGTATTACCCGGGAG 1080
Query 1078 ---CTCCTGGGTCGTACCCAGCTCCGAATCCGGAGTTTTCTACTGGTAATAAAA----T- 1129
|||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1081 GAGCTCCCGGGTCGTACCCAGCTCCTAATCCGGAGTTTTCTACCGGTAATAAAACCGGTA 1140
Query 1130 -T----C-C-AAAAGAGAATCACCATCCTGTCGGAAAATCGAATAGTCATGATGCTAAGG 1182
| | | |||||||||||| |||| ||| |||||||| |||||| ||||||||||||
Sbjct 1141 GTAAAGCTCCAAAAGAGAATCATCATCATGTAGGAAAATCAAATAGTAATGATGCTAAGG 1200
Query 1183 AGCTTCATATGTTTGTTTGGGGATCTAACGGGTCACCCGTTTCGGACCGAGCGGGTCTTC 1242
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1201 AGCTTCATATGTTTGTTTGGGGATCCAACGGATCACCCGTTTCGGACCGAGCTGGTCTTC 1260
Query 1243 AAGTTGATACTGCAGCCAATGAACAAGTCGGAAAATCGGATCAAGGCTGTGCCAAAGAGA 1302
||||||||| || |||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 1261 AAGTTGATAATGGAGCCAATGAACAAGTCGGAAAATCCGATCAAGGCGGTGCAAAAGAGA 1320
Query 1303 TTCGAATGTTGATCTCTGATCCTACTCAGAACGGTGAAAACAAAGCTGGTCCGATGAACG 1362
||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 1321 TTCGAATGTTGATCTCTGATCATACTCAAAATGGTGAAAACAAAGCTGGTCCGATGAACG 1380
Query 1363 GAGACTATGGTTGCGAAGAAGAGTTGGAGAGAGTCAAGGAAGTGCCTAACGGACTACACA 1422
| |||||||| | |||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 1381 GGGACTATGGCGGGGAAGAAGAGTCGGAGAGGGTAAAGGAAGTGCCTAACGGACTACACA 1440
Query 1423 AGCTTCGGTGTAACTCAACGGCGGAGCTAAACCCTAAAGAAGCTATAGAAACCAGTGAAA 1482
|||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct 1441 AGCTTCGGTGTAACTCCACAGCAGAGCTAAACCCTAAAGAAGCTATAGAAACGGGTGAAA 1500
Query 1483 CTGTACCGGTAAAACATATGCCGCCGGCAAGTGTGATGACTCGGCTGATATTGATAATGG 1542
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1501 CTGTACCGGTAAAACATATGCCACCAGCGAGTGTGATGACTCGGCTGATATTGATAATGG 1560
Query 1543 TGTGGAGGAAACTGATAAGGAACCCAAACACTTACTCTAGTCTCATTGGTCTGATTTGGG 1602
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1561 TGTGGAGGAAACTCATAAGAAACCCAAACACTTACTCTAGTCTCATTGGTCTCATTTGGG 1620
Query 1603 CTCTTGTCGCGTTCAGGTGGGATGTGGCAATGCCTAAAATCATTCAACAATCAATCTCAA 1662
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1621 CTCTTGTTGCTTTCAGGTGGGATGTGGCAATGCCTAAAATTATTCAACAATCAATCTCAA 1680
Query 1663 TTCTTTCTGATGCTGGTCTTGGTATGGCAATGTTCAGTTTGGGGTTGTTCATGGCATTGC 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TTCTTTCTGATGCTGGTCTTGGTATGGCAATGTTCAGTTTGGGGTTGTTCATGGCATTGC 1740
Query 1723 AACCTAAATTAATTGCTTGTGGAAATTTGACGGCCACTTTTGCAATGGCGGTGAGATTCT 1782
|||| |||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||
Sbjct 1741 AACCGAAATTAATTGCTTGCGGAAATTCGACGGCGACTTTTGCGATGGCGGTGAGATTCT 1800
Query 1783 TTACTGGACCAGCGGTGATGGCCGTAGCAGCAATGGCTATCGGATTACGTGGAGACCTAT 1842
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1801 TTACTGGACCAGCGGTAATGGCCGTGGCAGCAATGGCTATTGGATTACGTGGAGACCTAT 1860
Query 1843 TGCGTGTGGCCATTGTTCAAGCTGCATTGCCTCAAGGGATCGTGCCGTTTGTGTTTGCAA 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TGCGTGTGGCCATTGTTCAAGCTGCATTGCCTCAAGGGATCGTGCCGTTTGTGTTTGCAA 1920
Query 1903 AAGAGTATAACGTTCATCCCGCAATCTTGAGTACAGGGGTAATATTCGGAATGCTTATCG 1962
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1921 AAGAGTATAATGTTCATCCCGCAATCTTGAGTACAGGGGTAATATTTGGAATGCTTATCG 1980
Query 1963 CACTACCGATCACACTTGTTTACTACATTTTACTCGGGCTATAAGCTCTGT-AATGGAGG 2021
|||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1981 CACTACCGATTACACTTGTTTACTACATTTTACTCGGGCTATAAGCTCT-TCAATGGAGA 2039
Query 2022 AGTTCCGCTTGGCTGAAGAGGATAAAGAGAAGCAAGATAATTCATCCAAGATTAGTGGAA 2081
||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 2040 AGTTCTGCTTGGCTGAAGAGGATAAAGAGAAACAAGATAATTC--C-AAGATTAGTGGAA 2096
Query 2082 CGCAACTAGCAAATGTAATGTAACACGAGATTTAGTAAAAAATTAAAGCGACCAAGATTT 2141
||||||||| |||||||||||||||||| || ||||||| |||||| |||||||||||
Sbjct 2097 CGCAACTAGAAAATGTAATGTAACACGAAATGTAGTAAAT--TTAAAGGGACCAAGATTT 2154
Query 2142 GATTTGAGGATCCAAAAACGCTTTTCTTGTCTATATATCTTCTAGAGATTACTTGAG 2198
||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 2155 GATTTGAGGATCCAAAAACCCTTTTCTTGTCTATATATTTTCTAGAGATTATTTGAG 2211
> AT1G70940.1 | Symbols: PIN3, ATPIN3 | Auxin efflux carrier family
protein | chr1:26743054-26746395 FORWARD LENGTH=2563
Length=2563
Score = 534 bits (289), Expect = 1e-150
Identities = 442/518 (85%), Gaps = 2/518 (0%)
Strand=Plus/Plus
Query 1493 AAAACATATGCCGCCGGCAAGTGTGATGACTCGGCTGATATTGATAATGGTGTGGAGGAA 1552
|||| ||||||| ||||| ||||||||||| |||||||| |||||||||| ||||||||
Sbjct 1526 AAAAAATATGCCTCCGGCGAGTGTGATGACAAGGCTGATACTGATAATGGTTTGGAGGAA 1585
Query 1553 ACTGATAAGGAACCCAAACACTTACTCTAGTCTCATTGGTCTGATTTGGGCTCTTGTCGC 1612
||| || || ||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 1586 ACTCATCAGAAACCCAAACACTTACTCTAGTCTCATTGGACTTATTTGGGCTCTCGTCGC 1645
Query 1613 GTTCAGGTGGGATGTGGCAATGCCTAAAATCATTCAACAATCAATCTCAATTCTTTCTGA 1672
||| ||||| | ||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1646 TTTCCGGTGGCACGTGGCAATGCCCAAAATCATTCAACAATCTATCTCCATTCTATCTGA 1705
Query 1673 TGCTGGTCTTGGTATGGCAATGTTCAGTTTGGGGTTGTTCATGGCATTGCAACCTAAATT 1732
|||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1706 TGCTGGTCTTGGAATGGCAATGTTTAGTTTGGGGTTGTTCATGGCGTTGCAACCCAAATT 1765
Query 1733 AATTGCTTGTGGAAATTT-GACGGCCACTTTTGCAATGGCGGTGAGATTCTTTACTGGAC 1791
||| |||||||| |||| | ||| || ||||| |||||||| || ||| |||| || |
Sbjct 1766 AATCGCTTGTGGGAATTCAGT-GGCAACGTTTGCCATGGCGGTTAGGTTCCTTACGGGTC 1824
Query 1792 CAGCGGTGATGGCCGTAGCAGCAATGGCTATCGGATTACGTGGAGACCTATTGCGTGTGG 1851
| || |||||||| || || || || || |||||||||||||| || || ||||||| |
Sbjct 1825 CGGCCGTGATGGCGGTTGCTGCTATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCG 1884
Query 1852 CCATTGTTCAAGCTGCATTGCCTCAAGGGATCGTGCCGTTTGTGTTTGCAAAAGAGTATA 1911
| || ||||| || ||||| |||||||| || ||||| ||||||||||| || ||||| |
Sbjct 1885 CTATAGTTCAGGCCGCATTACCTCAAGGAATTGTGCCCTTTGTGTTTGCGAAGGAGTACA 1944
Query 1912 ACGTTCATCCCGCAATCTTGAGTACAGGGGTAATATTCGGAATGCTTATCGCACTACCGA 1971
| |||||||| || || || ||||||||||||||||| ||||||||||| || || ||||
Sbjct 1945 ATGTTCATCCTGCTATTTTAAGTACAGGGGTAATATTTGGAATGCTTATAGCGCTTCCGA 2004
Query 1972 TCACACTTGTTTACTACATTTTACTCGGGCTATAAGCT 2009
|||| || |||||||||||| |||||||| ||||||||
Sbjct 2005 TCACGCTGGTTTACTACATTCTACTCGGGTTATAAGCT 2042
> AT1G73590.1 | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family
protein | chr1:27659673-27663178 FORWARD LENGTH=2270
Length=2270
Score = 359 bits (194), Expect = 7e-98
Identities = 452/575 (79%), Gaps = 24/575 (4%)
Strand=Plus/Plus
Query 213 TACGTAGCCATGATCCTCGCTTACGGCTCCGTCCGGTGGTGGAAAATTTTCTCACCAGAC 272
|||||||| |||||||||||||||||||| ||| ||||||||||| ||| ||||||||
Sbjct 151 TACGTAGCTATGATCCTCGCTTACGGCTCTGTCAAATGGTGGAAAATCTTCACACCAGAC 210
Query 273 CAATGCTCCGGCATAAACCGCTTCGTCGC-CATTTTCGCTGTCCCTCTCCTCTCTTTCCA 331
|||||||||||||||||||| |||||||| | | ||||| || |||||||||||||||||
Sbjct 211 CAATGCTCCGGCATAAACCGTTTCGTCGCTC-TCTTCGCCGTTCCTCTCCTCTCTTTCCA 269
Query 332 CTTCATCTCCTCCAACAACCCATACGCAATGAATCTCCGATTCATCGCCGCCGATACACT 391
||||||| || | |||||||| ||||| ||||| ||||| ||| ||||||| ||| | ||
Sbjct 270 CTTCATCGCCGCTAACAACCCTTACGCCATGAACCTCCGTTTCCTCGCCGCAGATTCTCT 329
Query 392 CCAAAAACTAATCATGCTCACTCTCCTAATCATCTGG-GCTAACTTCA-CTCGCTCCGGT 449
||| ||| | || | ||| ||||||| || ||||| || |||| || | ||| ||||
Sbjct 330 CCAGAAAGTCATTGTCCTCTCTCTCCTCTTCCTCTGGTGCAAACT-CAGC-CGCAACGGT 387
Query 450 AGTCTCGAATGGAGCATCACAATCTTCTCTCTTTCAACACTTCCCAACACTCTCGTTATG 509
| | || |||| ||| || |||||||||| || ||||| ||||||||||| || |||
Sbjct 388 TCTTTAGATTGGACCATAACTCTCTTCTCTCTCTCGACACTCCCCAACACTCTAGTCATG 447
Query 510 GGAATACCTCT-CTTGATCGCCATGTACGGCGAATAT-TCCGGCTCAC-TCATGGTTCAG 566
|| |||||||| || | || ||||| || ||| | |||||| || ||||||||||
Sbjct 448 GGGATACCTCTTCTCAAAGGC-ATGTATGGT-AATTTCTCCGGCG-ACCTCATGGTTCAA 504
Query 567 ATCGTTGTTCTTCAGTGTATAATATGGTACACGCTTCTT-CTCTTTCT-TTTCGAATACA 624
|||||||||||||||||||| || |||||||| || | | |||||||| ||| || |||
Sbjct 505 ATCGTTGTTCTTCAGTGTATCATTTGGTACACACT-CATGCTCTTTCTCTTT-GAGTACC 562
Query 625 GAGGAGCTAAGATCTTGATCATG-GAACAGTTCCCAGAGACTGGTGCTTCGATTGTATC- 682
| ||||||||| | |||||| | || ||||| ||||| || | | || ||||| ||
Sbjct 563 GTGGAGCTAAGCTTTTGATC-TCCGAGCAGTTTCCAGACACAGCAGGATCTATTGTTTCG 621
Query 683 ATTCAAAGTTGAGTCCGATGTTGTTTCTTTAGACGGACATGATTTTCTT-G-AAACTGAT 740
||||| ||||| ||||| || | |||||||| ||| | || ||| | |||||||
Sbjct 622 ATTCAT-GTTGATTCCGACATTATGTCTTTAGATGGA-A-GACAACCTTTGGAAACTGAA 678
Query 741 GCTCAAATCGGTGACGATGGTAAGCTTCATGTTAC 775
||| | || || ||||| ||||||||||||||
Sbjct 679 GCTGAGATTAAAGAAGATGGGAAGCTTCATGTTAC 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109035583740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5