BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472562
Length=2257
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23090.1 | Symbols: AST91, SULTR3;3 | sulfate transporter 91... 3565 0.0
> AT1G23090.1 | Symbols: AST91, SULTR3;3 | sulfate transporter
91 | chr1:8184952-8189064 REVERSE LENGTH=2292
Length=2292
Score = 3565 bits (1930), Expect = 0.0
Identities = 2137/2236 (96%), Gaps = 17/2236 (1%)
Strand=Plus/Plus
Query 1 TAAAGACCGACCCGAAAGAATACTCATGTTTAAATTATCAGCAAAGAGCCAAGAGAGGAA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 TAAAGACCGACCCGAAATAATACTCATGTTTAAATTATCAGCAAAGAGCCAAGAGAGGAA 68
Query 61 ACATCACACATTGGTGACAAAAATTCTTAGGAAAACCAATTAATTATGGAGGTGCACAAG 120
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 69 ACATCACACATTGGTGACAAAAATTCTTAGGAAAACCAATT-A--ATGGAGGTGCACAAG 125
Query 121 GTGGTTGCTCCGCCGCATAAGAGCACGGTGGCGAAGCTGAAGACAAGACTGAAGGAGACC 180
|||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 126 GTGGTTGCTCCGCCGCATAAGAGCACGGTGGCAAAGCTAAAGACAAAACTGAAGGAGACT 185
Query 181 TTCTTCCCGGACGATCCCTTAAGACAGTTCAGAGGACAACCAAATCGTACCAAACTCATA 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 186 TTCTTCCCGGACGATCCCTTAAGACAGTTCAGAGGACAACCAAACCGTACCAAGCTCATA 245
Query 241 CGCGCGGCTCAATACATTTTCCCTATCCTCCAATGGTGTCCTGAGTACAGCTTCAGACTC 300
||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 246 CGCGCCGCTCAATACATTTTTCCAATCCTCCAATGGTGTCCTGAGTACAGCTTCAGCCTA 305
Query 301 CTCAAATCCGACGTCGTTTCTGGTCTCACTATCGCCAGTTTAGCTATTCCTCAGGGGATA 360
|||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 306 CTCAAATCCGACGTCGTTTCAGGTCTTACCATCGCTAGTTTAGCTATTCCTCAGGGGATT 365
Query 361 AGTTACGCGAAGCTAGCAAATTTGCCACCAATCGTTGGTCTATACTCGAGCTTCGTGCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AGTTACGCGAAGCTAGCAAATTTGCCACCAATCGTTGGTCTATACTCGAGCTTCGTGCCA 425
Query 421 CCGTTGGTTTATGCGGTCTTGGGAAGCTCAAGAGATCTAGCAGTGGGACCAGTCTCCATA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CCGTTGGTTTATGCGGTCTTGGGAAGCTCAAGAGATCTAGCAGTGGGACCAGTCTCCATA 485
Query 481 GCGTCGTTGATCTTAGGATCCATGCTAAGGCAACAAGTATCACCCGTAGACAATcctctt 540
|||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 486 GCGTCGTTAATCTTAGGATCCATGCTAAGGCAACAAGTATCTCCCGTAGACGATCCTGTT 545
Query 541 ctctttctacagctagccttctcttctaccttctttgctggtctctttcaagcctctctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CTCTTTCTACAGCTAGCCTTCTCTTCTACCTTCTTTGCTGGTCTCTTTCAAGCCTCTCTT 605
Query 601 GGAATCCTCAGGCTGGGATTTATAATAGACTTTCTATCAAAAGCGACGCTAATAGGGTTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GGAATCCTCAGGCTGGGATTTATAATAGACTTTCTATCAAAAGCGACGCTAATAGGGTTT 665
Query 661 ATGGGTGGAGCAGCCATAATTGTATCACTCCAACAGTTAAAGGGTCTGCTTGGGATAACT 720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 666 ATGGGTGGAGCAGCCATAATTGTATCACTCCAACAGCTAAAGGGTCTGCTTGGGATAACT 725
Query 721 CATTTCACAAAGCAAATGAGTGTGGTCCCTGTTCTCTCCTCTGTTTTCCAACACACCAAC 780
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 726 CATTTCACAAAGCATATGAGTGTAGTCCCTGTTCTCTCCTCTGTTTTCCAACACACCAAC 785
Query 781 GAGTGGTCATGGCAAACAATTGTGATGGGAGTTTGCTTCTTGTTCTTCTTGCTCGCTACA 840
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 786 GAGTGGTCATGGCAAACAATTGTGATGGGAGTTTGCTTCTTGCTCTTCTTGCTCTCGACA 845
Query 841 CGTCACCTCAGCATGAAGAAGCCGAAGCTGTTCTGGGTCTCAGCCGGAGCTCCACTTCTT 900
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 846 CGTCACCTCAGCATGAAGAAGCCGAAGCTGTTTTGGGTCTCAGCCGGAGCACCACTTCTT 905
Query 901 TCCGTTATCGTCTCTACACTTCTTGTCTTTGTTTTCAGAGCCGACCGTCACGGAATCAGC 960
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 906 TCCGTTATCGTCTCTACACTTCTTGTCTTTGTTTTCAGAGCCGAGCGTCACGGAATCAGC 965
Query 961 GTCATCGGGAAATTACAAGAAGGTTTGAATCCACCGTCTTGGAACATGCTTCAGTTTCAC 1020
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GTCATCGGGAAATTACCAGAAGGTTTGAATCCACCGTCTTGGAACATGCTTCAGTTTCAC 1025
Query 1021 GGAAGTCATCTCGCACTCGTCGCCAAAACCGGACTCGTCACCGGAATCGTCTCCCTCACG 1080
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GGTAGTCATCTCGCACTCGTCGCCAAAACCGGACTCGTCACCGGAATCGTCTCCCTCACG 1085
Query 1081 GAAGGAATCGCAGTGGGAAGAACATTCGCAGCGCTAAAGAACTACCACGTAGATGGAAAC 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1086 GAAGGAATCGCAGTGGGAAGAACATTTGCAGCGCTAAAGAACTACCACGTAGATGGAAAC 1145
Query 1141 AAAGAGATGATCGCCATTGGTCTAATGAACGTAGTAGGCTCTGCCACATCTTGCTACGTC 1200
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1146 AAAGAGATGATCGCCATTGGTCTGATGAACGTAGTAGGCTCTGCCACATCTTGCTACGTC 1205
Query 1201 ACAACCGGAGCATTCTCTAGATCAGCGGTTAACAACAACGCGGGAGCTAAAACCGCGGTT 1260
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1206 ACAACCGGAGCATTCTCTAGATCAGCGGTCAACAACAACGCGGGAGCTAAAACCGCAGTT 1265
Query 1261 TCAAACATCGTGATGTCGGTCACGGTTATGGTTACGCTTCTCTTCCTAATGCCGCTTTTC 1320
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1266 TCAAACATTGTTATGTCGGTCACTGTTATGGTTACGCTTCTCTTCCTAATGCCGCTTTTC 1325
Query 1321 GAGTACACTCCCAACGTGGTCCTCGGTGCCATCATCGTGACCGCGGTCATTGGTCTAATT 1380
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1326 GAATACACTCCCAATGTGGTCCTCGGTGCCATCATTGTGACCGCGGTCATTGGTCTCATC 1385
Query 1381 GACCTTCCCGCGGCCTGTCAGATATGGAAGATCGATAAATTTGATTTCCTGGTGATGCTT 1440
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1386 GACCTTCCCGCGGCCTGTCACATATGGAAGATCGATAAATTTGATTTCTTGGTGATGCTT 1445
Query 1441 TGCGCGTTCTTTGGTGTCATTTTCCTATCCGTTCAAAACGGTCTAGCCATTGCGGTAGGG 1500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1446 TGCGCGTTCTTTGGTGTCATTTTCCTATCCGTTCAAAACGGTCTAGCCATTGCGGTGGGG 1505
Query 1501 CTATCGTTGTTCAAGATATTGATGCAAGTAACAAGGCCGAAAATGGTTATAATGGGTAAT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CTATCGTTGTTCAAGATATTGATGCAAGTAACAAGGCCGAAAATGGTTATAATGGGTAAT 1565
Query 1561 ATTCC-GCGAACGGATATATACCGGGATCTTCATCATTACAAAGAAGCACAAAGGATTCC 1619
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1566 ATTCCTG-GAACGGATATATACCGAGATCTTCATCATTACAAAGAAGCACAAAGGATCCC 1624
Query 1620 GGGATTCCTTGTCTTAAGCATTGAATCTCCTGTCAATTTCGCCAATTCTAACTACCTCAC 1679
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1625 GGGATTTCTTGTTTTAAGCATCGAATCTCCTGTCAATTTCGCCAATTCTAACTACCTCAC 1684
Query 1680 TGAAAGAACATCTCGTTGGATTGAAGAATGCGAAGAAGAGGAAGCTCAAGAGAAGCATTC 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 TGAAAGAACATCTCGTTGGATTGAAGAATGCGAAGAAGAGGAAGCTCAAGAGAAGCATTC 1744
Query 1740 TAGCCTTCAGTTCTTGATTCTTGAAATGTCAGCCGTGAGCGGTGTAGACACAAACGGAGT 1799
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 TAGCCTACAGTTCTTGATTCTTGAAATGTCAGCCGTGAGCGGTGTAGACACAAACGGAGT 1804
Query 1800 CTCCTTTTTTAAGGAACTGAAGAAAACAACCGCGAAGAAGGACATTGAGCTTGTGTTTGT 1859
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1805 GTCCTTTTTTAAGGAACTTAAGAAAACAACCGCCAAGAAGGACATCGAGCTTGTGTTTGT 1864
Query 1860 GAACCCTCTAAGCGAAGTGATGGAGAAGCTACAAAGAGCTGACGAACAAAAAGAGTTCAT 1919
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1865 GAACCCTCTAAGCGAAGTGGTGGAGAAGCTTCAAAGAGCTGACGAACAAAAAGAGTTCAT 1924
Query 1920 GAGACCCGAGTTTCTCTTCTTAACCGTCGCTGAGGCCGTTGCGTCGCTATCTCTTAAAGG 1979
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1925 GAGGCCCGAGTTTCTCTTCTTAACCGTCGCTGAGGCCGTTGCGTCGCTCTCTCTTAAAGG 1984
Query 1980 GCCACCTCTCAATAACGTTTAACTATAATTTTTTGGGTCGGTCCAAATAT-GATATTTAA 2038
|||| |||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 1985 GCCATCTCTCAGTAACGTTTAACTATAATTTTTTGTATCGGTCCAA-TATTGATATTTAA 2043
Query 2039 CGGATGGTTAAAtttttcctttttgtctctttt-catcttttcatttcGGTACAGATGTA 2097
| |||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||
Sbjct 2044 CCGATGGTTAAATTTTTC-TTTTTGTCTCTTTTTCATCTTTTAATTTCAGTACAGATGTA 2102
Query 2098 ATGTTATGTTtctctctctctctTTC--CGGTAATGATTTTGGTCAAGAT-TACAAGATA 2154
|| ||| ||| || |||||||||||| | || ||||||||||||||||| | | ||
Sbjct 2103 ATATTACGTT-CT-TCTCTCTCTTTCTTCAGTGATGATTTTGGTCAAGATATGTTTG-TA 2159
Query 2155 TGTTTTCGCCATTTTGTAGTATTACTTTGCCATATTTAGTCTCCGAGGATAAAATTGATC 2214
|| ||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||
Sbjct 2160 TGATTTCGCCATTTTGTAGT-TTACTAGGCCATGTTTAGTCTCCGAGAATAAAATTGATC 2218
Query 2215 TTGAAATCGAATTGAT 2230
| ||| ||||||||||
Sbjct 2219 TAGAA-TCGAATTGAT 2233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111997415895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5