BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472563

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23100.1 | Symbols:  | GroES-like family protein | chr1:8195...   667    0.0  
  AT1G23110.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  54.7    8e-07


> AT1G23100.1 | Symbols:  | GroES-like family protein | chr1:8195776-8196475 
FORWARD LENGTH=524
Length=524

 Score =  667 bits (361),  Expect = 0.0
 Identities = 449/490 (92%), Gaps = 11/490 (2%)
 Strand=Plus/Plus

Query  20   CAGAGCAACATTTTCGTAATCCGATCTCCGTCGTCGTCGTCGAAGCAGAGAGAAATGGCG  79
            |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct  38   CAGAGCAACATTTTCGTAATCCGATCTCCGTCGTCGTCGTCGAATCAGATAAAAATGGCG  97

Query  80   AAGCGTTTGATCCCGACTCTAAACCGTGTATTGGTGGAGAAGATTCTTCCACCATCAAAG  139
            |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct  98   AAGCGTTTGATCCCGACTCTCAACCGTGTATTGGTGGAGAAGATTCTCCCACCGTCAAAG  157

Query  140  ACCGTCTCCGGCATTCTCTTACCGGAGAAATCATCTCAGTTGAATTCCGGGAAAGTGATA  199
            |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct  158  ACCGTCTCCGGCATTCTCCTACCGGAGAAATCATCTCAGTTGAATTCCGGGAGAGTTATA  217

Query  200  GCAGTTGGTCCTGGAGCTAGAGACAGAGCCGGGAATCTAATTCCGGTTTCGGTTAAAGAA  259
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  218  GCAGTTGGTCCTGGAGCTAGAGACAGAGCAGGGAATCTAATTCCGGTTTCGGTTAAGGAA  277

Query  260  GGGGACAATGTTCTTTTGCCTGAATTTGATGGTACTCAAGTTAAGCTTGGAGAGAAAGAG  319
            || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct  278  GGAGACAATGTTCTTTTGCCTGAATTTGGCGGTACTCAAGTTAAGCTTGGAGAGAAAGAG  337

Query  320  TTCCTTTTGTATAGGGATGAAGATATTATGGGTACTCTTCACGATTGATGTGGGAAAGAG  379
            ||||| |||||||||||||||||||| |||| ||| |||||||| |||||||  ||||||
Sbjct  338  TTCCTATTGTATAGGGATGAAGATATCATGGCTACACTTCACGAGTGATGTGTTAAAGAG  397

Query  380  ATAGAATTGTTTTG-TTG-TCTGCGATA-GTCTAT-TG-A-TT-TC-GACTTTTGGATCA  431
            |||||||| | | | ||  |||  | |  || | | || | || || ||| |||||||||
Sbjct  398  ATAGAATT-TAT-GATTCCTCTTTGTTTTGT-TGTCTGCAATTGTCTGACATTTGGATCA  454

Query  432  ATTGTTATGATTGTTCTTCATTGTTGGCAACAAGTTCTTATAATTCAATAATCTCTTTTG  491
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  455  ATTGTTATGATTGTTCTTCACTGTTGGCAACAAGTTCTTATAATTCAATAATCTCTTTTG  514

Query  492  TTTGGGAATG  501
            ||||||||||
Sbjct  515  TTTGGGAATG  524


> AT1G23110.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; LOCATED IN: chloroplast; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G70900.1); 
Has 59 Blast hits to 59 proteins in 15 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8196447-8198063 
REVERSE LENGTH=1211
Length=1211

 Score = 54.7 bits (29),  Expect = 8e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Minus

Query  473   AATTCAATAATCTCTTTTGTTTGGGAATG  501
             |||||||||||||||||||||||||||||
Sbjct  1211  AATTCAATAATCTCTTTTGTTTGGGAATG  1183



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5