BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472563 Length=501 Score E Sequences producing significant alignments: (Bits) Value AT1G23100.1 | Symbols: | GroES-like family protein | chr1:8195... 667 0.0 AT1G23110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 54.7 8e-07 > AT1G23100.1 | Symbols: | GroES-like family protein | chr1:8195776-8196475 FORWARD LENGTH=524 Length=524 Score = 667 bits (361), Expect = 0.0 Identities = 449/490 (92%), Gaps = 11/490 (2%) Strand=Plus/Plus Query 20 CAGAGCAACATTTTCGTAATCCGATCTCCGTCGTCGTCGTCGAAGCAGAGAGAAATGGCG 79 |||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| Sbjct 38 CAGAGCAACATTTTCGTAATCCGATCTCCGTCGTCGTCGTCGAATCAGATAAAAATGGCG 97 Query 80 AAGCGTTTGATCCCGACTCTAAACCGTGTATTGGTGGAGAAGATTCTTCCACCATCAAAG 139 |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| Sbjct 98 AAGCGTTTGATCCCGACTCTCAACCGTGTATTGGTGGAGAAGATTCTCCCACCGTCAAAG 157 Query 140 ACCGTCTCCGGCATTCTCTTACCGGAGAAATCATCTCAGTTGAATTCCGGGAAAGTGATA 199 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| Sbjct 158 ACCGTCTCCGGCATTCTCCTACCGGAGAAATCATCTCAGTTGAATTCCGGGAGAGTTATA 217 Query 200 GCAGTTGGTCCTGGAGCTAGAGACAGAGCCGGGAATCTAATTCCGGTTTCGGTTAAAGAA 259 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 218 GCAGTTGGTCCTGGAGCTAGAGACAGAGCAGGGAATCTAATTCCGGTTTCGGTTAAGGAA 277 Query 260 GGGGACAATGTTCTTTTGCCTGAATTTGATGGTACTCAAGTTAAGCTTGGAGAGAAAGAG 319 || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 278 GGAGACAATGTTCTTTTGCCTGAATTTGGCGGTACTCAAGTTAAGCTTGGAGAGAAAGAG 337 Query 320 TTCCTTTTGTATAGGGATGAAGATATTATGGGTACTCTTCACGATTGATGTGGGAAAGAG 379 ||||| |||||||||||||||||||| |||| ||| |||||||| ||||||| |||||| Sbjct 338 TTCCTATTGTATAGGGATGAAGATATCATGGCTACACTTCACGAGTGATGTGTTAAAGAG 397 Query 380 ATAGAATTGTTTTG-TTG-TCTGCGATA-GTCTAT-TG-A-TT-TC-GACTTTTGGATCA 431 |||||||| | | | || ||| | | || | | || | || || ||| ||||||||| Sbjct 398 ATAGAATT-TAT-GATTCCTCTTTGTTTTGT-TGTCTGCAATTGTCTGACATTTGGATCA 454 Query 432 ATTGTTATGATTGTTCTTCATTGTTGGCAACAAGTTCTTATAATTCAATAATCTCTTTTG 491 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 455 ATTGTTATGATTGTTCTTCACTGTTGGCAACAAGTTCTTATAATTCAATAATCTCTTTTG 514 Query 492 TTTGGGAATG 501 |||||||||| Sbjct 515 TTTGGGAATG 524 > AT1G23110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 59 Blast hits to 59 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8196447-8198063 REVERSE LENGTH=1211 Length=1211 Score = 54.7 bits (29), Expect = 8e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 473 AATTCAATAATCTCTTTTGTTTGGGAATG 501 ||||||||||||||||||||||||||||| Sbjct 1211 AATTCAATAATCTCTTTTGTTTGGGAATG 1183 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23911453972 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5