BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472566
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1181 0.0
> AT1G23110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: chloroplast; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G70900.1);
Has 59 Blast hits to 59 proteins in 15 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8196447-8198063
REVERSE LENGTH=1211
Length=1211
Score = 1181 bits (639), Expect = 0.0
Identities = 788/856 (92%), Gaps = 26/856 (3%)
Strand=Plus/Plus
Query 20 AGCAATCAAATTTTAGAAC--AA-AA--GAGGCAACAAAGTAGTTGGATTGTTCTGGTAT 74
||||||||||||||||||| || || ||| ||||||||||||| |||| |||||||
Sbjct 201 AGCAATCAAATTTTAGAACAGAACAAGGGAGACAACAAAGTAGTTTGATTATTCTGGTGG 260
Query 75 CGTATAGAGAGATTTTGGTTCTGTGTGGTTTCAGGAAGATT-TCATGAGCCTCCAAAATG 133
|||||||| | || |||||| | |||||||| || |||||| |||||| || |||||||
Sbjct 261 CGTATAGATAAATGTTGGTTGTCTGTGGTTT-AGCAAGATTACCATGAGTCTGCAAAATG 319
Query 134 TATCAAAGTCAAGCAATAATGCCCTTGAGGGTATCCATGGGGTTCATGTCACGTCTCATT 193
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 320 TATCAAAGTCGAGC---AATGCCCTTGAGGGTATCCACGGGGTTCATGTCACGTCTCATT 376
Query 194 CGCCCTTCTCATTTGAGAAGACAACTCAAGTTAGTGAC--T----------CCAAATCCA 241
| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 377 CTCCTTTCTCATTTGAGAAGACAACTCAAGTTAGTGACTTTCAGACCAACACCAAATCCT 436
Query 242 CAGACATGGAATCAAATCAGAGAC-TGCTCATCGAACGTTTTTGGCAACAGAGACCTCCA 300
| | ||||||||||||||| |||| | | |||||||||||||||||| || |||||||||
Sbjct 437 CTGTCATGGAATCAAATCAAAGACTTTC-CATCGAACGTTTTTGGCAGCAAAGACCTCCA 495
Query 301 TGCTTAAGGCCAATCTGTTGCAGCATCCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 496 TGCTTAAGGCCAATCTGTTGCAGCATTCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCT 555
Query 361 AATGTGGCTACTTCACTTCCTTTCATATTCCTCGGTTTGCAGGCACCAAGGAAGAATCTG 420
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 556 AATGTGGCTACTTCACTTCCTTTCATCTTCCTCGGAATGCAGGCACCAAGGAAGAATCTG 615
Query 421 AACACAAAGGTGTACGCAAACTCCTTAATTGGAGTTGGAATTGCATCGAGTCTGTATCAT 480
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 616 AACACAAAGGTGTACGCAAACTCCCTAATTGGAGTTGGAATTGCGTCGAGTCTGTATCAT 675
Query 481 GCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACA 735
Query 541 ACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAGTTTTTGATGGCTGCA 600
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 736 ACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAATTTCTGATGGCTGCA 795
Query 601 TCAGCTTTAGTTCTACCTTTTCAGCCTCTCATGGTCTCTGCCGTTCACACCGGAATGATG 660
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 796 TCAGCTTTAGTTCTACCTTTTCAACCTCTCATGGTCTCTGCCGTTCACACTGGAATGATG 855
Query 661 GAAGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACCGCTCATAACGTA 720
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 856 GAGGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACAGCTCATAACGTA 915
Query 721 CACAAGATGTCTTCATTGCTAGGAGGTGC-CTTGTTCATAGCTGATGATTTCTTCCCCGA 779
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 916 CACAAGATGTCTTCCTTGCTAGGAGGTGCTCT-GTTCATAGCTGATGATTTCTTCCCCGA 974
Query 780 GACACCATTCATTCACGCCGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAA 839
|||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GACACCTTTCCTTCACGCAGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAA 1034
Query 840 TAAGCTTCTTGAGTAG 855
||| ||||||||||||
Sbjct 1035 TAAACTTCTTGAGTAG 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5