BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472567
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23120.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 846 0.0
> AT1G23120.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:8198720-8199557 FORWARD
LENGTH=713
Length=713
Score = 846 bits (458), Expect = 0.0
Identities = 582/641 (91%), Gaps = 12/641 (2%)
Strand=Plus/Plus
Query 1 ATGCTTTTTGTTATGGTAAAGATAGATAACACAAGAGCCAGCGTCATTGACTAGG-GTAT 59
|||||||||||||||||||||||| | |||| || || |||||| | |||| || |||
Sbjct 1 ATGCTTTTTGTTATGGTAAAGATAAACAACAGAAAAGTCAGCGTGAGAGACT-GGATTAT 59
Query 60 CGTAAAGCCATGCCTGGTGTCCAGACTCTCGAACTGGAGATCCAAGTGAACATGACCGCT 119
| || ||||||| |||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 60 CTTAGAGCCATGGCTGGTGTCCAGACTCTCGAATTAGAGATCCAAGTGAATATGACCGCC 119
Query 120 GAGAGATTCTTCAAGACTTTCAAAAAGAAAGAAGGAAATTTCACGGACAAGACAGAGGCA 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGAGATTCTTCAAGACTTTCAAGAAGAAAGAAGGAAATTTCACGGACAAGACAGAGGCA 179
Query 180 GTTTCTGTTGAACGTGGCGATCCCACATCCAACTCCTCTATTCAGATCTGGAATTTCATC 239
|||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTTATGTTCATCGTGACGATCCCACATCCAACTCCTCTATTCAGATCTGGAATTTCATC 239
Query 240 GTTGATGGAAAGATGGAGCAGATCAAAGAGAAGATAGAGGTAGACGAAGAGAACAAGTCG 299
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 240 GTTGATGGAAAAATGGAGCAGATCAAAGAGAAGATAGACGTAGATGAAGAGAACAAGTCG 299
Query 300 GTATCTTTCGTAGCTCTTGAAGGAGATGTGTTGAAGCAATATAAGAGCTATAAGATAACA 359
|| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 GTGTCTTTCTTAGCTCTTGAAGGAGATGTGTTAAAGCAATATAAGAGCTATAAGATAACA 359
Query 360 CTTGACGTTGTTCCTAAAGG-TGATCAAGTTTGTATTGCCAAGTGGACATGGGAATACGA 418
||||||||||||||||| || | || ||||||||||||| ||||||||||||||||||||
Sbjct 360 CTTGACGTTGTTCCTAA-GGATCATAAAGTTTGTATTGCAAAGTGGACATGGGAATACGA 418
Query 419 GAAGCTAAACGACGACGTTCCTCCCCCTACCAGATACACTGCGTTCGTTGCAGATTACAC 478
|||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 GAAGTTAAATGACGACGTTCCTCCCCCTACCAGATACACTGCGTTCGTTGAAGATTACAC 478
Query 479 ACGCGACCTCGAGACTAGATTGTTGTTTGAATCATGA-TCATATCATTAATGTCTCTGAG 537
|||||||||||||||||||||||||| |||||||||| | ||||||| |||||||| |||
Sbjct 479 ACGCGACCTCGAGACTAGATTGTTGTCTGAATCATGAAT-ATATCATCAATGTCTCCGAG 537
Query 538 TTCCTTGTTATATAAATCAGATCTTGTTATGCaaaaaaa-ataaa-ataaaaTACACAGA 595
|||||||| | ||||||||||||||| |||| |||| || || ||||| | || |
Sbjct 538 TTCCTTGTCAAATAAATCAGATCTTGCTATG-AAAATAATATTTTTATAAATTTT-CATA 595
Query 596 AATGATGACATGAAACAAATCGCAT-T-AACTAATATGAAA 634
||||||||||||||||||||||||| | |||||||||||||
Sbjct 596 AATGATGACATGAAACAAATCGCATATTAACTAATATGAAA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5