BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472569
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23140.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 843 0.0
> AT1G23140.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:8202261-8203215 REVERSE LENGTH=642
Length=642
Score = 843 bits (456), Expect = 0.0
Identities = 525/559 (94%), Gaps = 2/559 (0%)
Strand=Plus/Plus
Query 1 TAAGAACCCAAGAACAAGACAAAAGACAAGAGTCGGAGGAGACATGGAGAATCTGGTGGG 60
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TAAGAATCCAAGTACAAGACAAAAGACAAGAGTCCGAGGAGACATGGAGAATCTGGTGGG 60
Query 61 ACTTCTTAGAATTC-GAGTGAAAAGAGGGATTAATCTTGTTAGTCGTGATTCTAATACCA 119
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTCTTAGAA-TCAGAGTGAAAAGAGGGATTAATCTTGTTAGTCGTGATTCTAATACCA 119
Query 120 GCGACCCTTTCGTCGTCGTTACCATGGGTTCTCAGAAATTGAAGACTCGTGGTGTGGAAA 179
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 120 GCGACCCTTTCGTCGTCGTAACCATGGGTTCTCAGAAATTGAAGACACGTGGTGTGGAAA 179
Query 180 ATAGCTGCAACCCTGAGTGGGACGATGAATTGACGCTTGGAATCAATGATTCTAATCAAC 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 ATAGCTGCAACCCTGAGTGGGACGATGAATTGACGCTTGGAATCAATGATCCTAATCAAC 239
Query 240 CTGTGATTCTCGAAGTGTTTGATAAGGATACATTCACTTCGCATGACACGATGGGAGATG 299
||||| ||||||||||| |||||| ||||| |||||||| |||||| ||||||||||||
Sbjct 240 ATGTGACTCTCGAAGTGTATGATAAAGATACGTTCACTTCCCATGACCCGATGGGAGATG 299
Query 300 CGGAAATAGACATCAAGCCGTTTTTCGAGGCTCAAGGAACGGATATTCAAGAACTCTCTG 359
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 300 CGGAAATAGACATCAAGCCGTTTTTCGAGGTTCAAGGAACGGATATTCAAGAACTCACTA 359
Query 360 ATGGAACCGAGATACATAGAGTGAAGCCGAGTGGAGACAACTGCTTAGCTAAAGAGAGTA 419
||||||||||||| | ||||||||||||||||||||| ||||| || ||| |||||||||
Sbjct 360 ATGGAACCGAGATCCGTAGAGTGAAGCCGAGTGGAGATAACTGTTTGGCTGAAGAGAGTA 419
Query 420 GAATCATCTTCAGTAATGGAAAGATTGTCCAAGACATGATTCTCAAGCTGAGAAATGTAG 479
| |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 420 GGATCATCTTCAGTAATGGAAAGATTCTTCAAGACATGATTCTCCAGCTGAGAAATGTAG 479
Query 480 AAAGTGGTGAGGTTGAGGTTCAAATCGAGTGGATCGATGTTACTGGTTCAAGCGATCTTT 539
| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||| |||
Sbjct 480 AGAGTGGTGAGGTTGAGATCCAAATCGAGTGGATCAATGTTACTGGTTCAAGCGATTTTT 539
Query 540 GAAGGAGAAATGTATGTAG 558
||||||||||||||| |||
Sbjct 540 GAAGGAGAAATGTATATAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5