BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472570

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23145.1 | Symbols: RALFL2 | RALF-like 2 | chr1:8203962-8204...   344    3e-94


> AT1G23145.1 | Symbols: RALFL2 | RALF-like 2 | chr1:8203962-8204255 
FORWARD LENGTH=294
Length=294

 Score =  344 bits (186),  Expect = 3e-94
 Identities = 274/313 (88%), Gaps = 20/313 (6%)
 Strand=Plus/Plus

Query  1    ATGGAAGCAATAAGACCTATGCTCGTGGCAATACTCGTGTTATCATGTGTGTTTATGAAT  60
            ||||||||   ||||| |||||||||| |||||||| ||||||||| |||||||||||||
Sbjct  1    ATGGAAGC---AAGACATATGCTCGTGACAATACTCTTGTTATCATTTGTGTTTATGAAT  57

Query  61   ATCATGAAGGTGGAAGCTCAAAAAGAAATTGGATATCCAGCAATAGGACGTGATGGTGCA  120
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  58   ATCATGAAGGTGGAAGCTCAAAAAGTAATTGGATATCCAGCAATAGGACGTGATGGTGCA  117

Query  121  CATGGATGTAGTCCTAAATATCCTTCAGTACCATGTCGACCAAAACAACCAGAGAATCCG  180
            | |||||||||||||||| |||||||| |     ||| || ||  ||||| ||||| |||
Sbjct  118  CGTGGATGTAGTCCTAAAGATCCTTCA-T-----GTCCAC-AA--CAACCGGAGAAGCCG  168

Query  181  TACAAGCGAGGATGTGAGAAAATTACAAGATGTAAACGCGATGGCGATGGCGATAAGCAA  240
            ||||||||||||||||||||||||||||||||| |||| ||| ||     || |||||||
Sbjct  169  TACAAGCGAGGATGTGAGAAAATTACAAGATGTGAACGTGATCGC-----CG-TAAGCAA  222

Query  241  GCAGC-TCTTCTGAATCCTCAAAAAGTACTAGATGTAGTCGCGGTGATGACAAAGGCCAA  299
            ||  | ||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||
Sbjct  223  GCC-CATCTTCGGAATCCTCGAAAAGTACTAGATGTAGTCGCAGTGATGGCAAAGGCCAA  281

Query  300  GCAGCTCTTCTGA  312
            |||||||| ||||
Sbjct  282  GCAGCTCTACTGA  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5