BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472573
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23160.1 | Symbols: | Auxin-responsive GH3 family protein |... 841 0.0
AT5G13320.1 | Symbols: PBS3, GDG1, WIN3, GH3.12 | Auxin-respons... 261 1e-68
> AT1G23160.1 | Symbols: | Auxin-responsive GH3 family protein
| chr1:8209232-8211325 FORWARD LENGTH=1737
Length=1737
Score = 841 bits (455), Expect = 0.0
Identities = 660/748 (88%), Gaps = 58/748 (8%)
Strand=Plus/Plus
Query 621 GGCAAACACCATTGAAAAAATATGCAACCAAAAATGTTGGAAAGGTATAGTAACAAGACT 680
|||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 816 GGCAGACACCATTGAACAAATATGCAACCAAAAATGTTGGAAAGGTATAATCACAAGACT 875
Query 681 TTGGCCAAAAGCTAAATATATTGAAACTATTGTTACTGGTTCGATGGTGCAGTATGTTCC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TTGGCCAAAAGCTAAATATATTGAAACTATTGTTACTGGTTCGATGGTGCAGTATGTTCC 935
Query 741 CACATTGAACTATTACTCTAATGATATGTTACCTCTCATTTCAACAATCTACGCTTCTTC 800
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 936 CACATTGAACTATTACTCTAATAATATGTTACCTCTCATTTCAACAATCTACGCTTCTTC 995
Query 801 GGAGACTCAATTCGGGTTAAATCTCAATCCTATGTGCAAGCCTGAAGATGTATCGTACAC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GGAGACTCAATTCGGGTTAAATCTCAATCCTATGTGCAAGCCTGAAGATGTATCGTACAC 1055
Query 861 GTTCATGCCAAACGTGTCCTACTTCGAGTTCATACCTGTGGATGGAGACAAGAACAATGT 920
|||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1056 ATTCATGCCCAACGTGTCCTACTTCGAGTTCATACCAGTGGATGGAGACAAGAACGATGT 1115
Query 921 TGTTGACCTTGCTGATGTCAAACTCGGATGTTCTTATGAAGCTGTGGTTACAAATTT--C 978
|||||||||||||||||||||||| ||||||| |||||| ||||| || |||||||| |
Sbjct 1116 TGTTGACCTTGCTGATGTCAAACTTGGATGTTGTTATGAGGCTGTCGTCACAAATTTTTC 1175
Query 979 AG------A-A---TCAGAGTTGGAGATATTCTAGTGGTAACTGGTTTCCACAACAAAGC 1028
|| | | | ||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1176 AGGCTTGTATAGAATAAGAGTTGGAGACATTCTAGTGGTGACTGGTTTCCATAACAAAGC 1235
Query 1029 ACCTCAGTTTAGGTTTATAAGAAGAGACAACGTGGTTTTAAGCATTGACTTGGACAAAAC 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 ACCTCAGTTTAGGTTTATAAGAAGAGACAACGTGGTTTTAAGCATTGACTTGGACAAAAC 1295
Query 1089 TAACGAGGATGATCTGTTTAAGGCCGTGAATCGCGGAAAACTCACTCTCGACTCATCAGA 1148
|||||| ||||||||||||||||| |||||| || |||||||||||| ||||||||| |
Sbjct 1296 TAACGAAGATGATCTGTTTAAGGCGGTGAATAACGCAAAACTCACTCTTGACTCATCACA 1355
Query 1149 TCTCATGCTA---G-CT--A-T-GCT--G---ATATCTCCACTGTCCCGGGACA--A--- 1190
|||||||||| | || | | ||| | ||||||||||| |||||||||| |
Sbjct 1356 TCTCATGCTAATAGACTTCACTAGCTATGCTGATATCTCCACTATCCCGGGACACTACGT 1415
Query 1191 A----A-----AC--AAAGA-CAAGAA-GA-G-CAAGAAG--CA-----CA--TAGAGCT 1226
| | | ||||| ||| || || | ||||||| || || |||||||
Sbjct 1416 AGTTTATTGGGAAGTAAAGAACAAAAACGAAGACAAGAAGAGCAAAAAGCACATAGAGCT 1475
Query 1227 CAAACAAGAGACATTCTCGGAGTGTTGTTTACTAATGGAGGATTCACTT-GACGAG-GTT 1284
|||| ||||||||||||||||||||||||||||||||||||||||| || ||| || |||
Sbjct 1476 CAAAGAAGAGACATTCTCGGAGTGTTGTTTACTAATGGAGGATTCA-TTAGAC-AGTGTT 1533
Query 1285 TACAAGAATTGTCGGTTTAAGGAGGAAT 1312
||||||| ||||||||||||||||||||
Sbjct 1534 TACAAGATTTGTCGGTTTAAGGAGGAAT 1561
Score = 540 bits (292), Expect = 2e-152
Identities = 387/429 (90%), Gaps = 21/429 (5%)
Strand=Plus/Plus
Query 154 CCCTCGAATGTCATTTCAGCCCAGCCTATAACCGGTTTCGTACTAAGTTCGGGAACTTCA 213
||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||
Sbjct 247 CCCTCGAATGTCATTTCGGCCCGGCCTATAACCGGTTTTGTACTAAGTACGGGAACTTCA 306
Query 214 GGGGGAGCACAAAAGATGATGCCATGGAATGAAAAATATTTAG---A-TT---C-T--TG 263
||||||||||||||||||||||||||||||||||||||||||| | || | | ||
Sbjct 307 GGGGGAGCACAAAAGATGATGCCATGGAATGAAAAATATTTAGACAACTTGACCTTCATG 366
Query 264 TATGATCTTCG---G------AT--GCATTAATGTGAAAAATGTGGAGAAAGGAAAGGCG 312
||||||||||| | || ||| |||||||||| ||||||||||||||||||||
Sbjct 367 TATGATCTTCGTATGCATATTATAAGCAATAATGTGAAAGATGTGGAGAAAGGAAAGGCG 426
Query 313 ATGATGTTTTACTTCACTAAACTCGAATCCATCACTCCCTCTGGCTTGCCCGCTCGCGTC 372
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 427 ATGATGTTTTACTTCACTAAACTCGAATCCATCACTCCCTCTGGCTTGCCTGCTCGAGTC 486
Query 373 GCAAGTAGTAGCTATTTAAAGAGCAACTATTTCAAGAACCGTCCATCGAACTGGTATTAC 432
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 487 GCCAGCAGTAGCTATTTAAAGAGCAACTATTTCAAGAACCGTCCATCAAACTGGTATTAC 546
Query 433 ACGTACACCAGTCCAGATGAACTCACTCTATGTCCAGACAACAAACAAAATCTCTACTGC 492
| ||||| || || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 547 TCTTACACAAGCCCTGATGAAGTCACTCTATGTCCAGACAACAAACAAAATCTCTACTGC 606
Query 493 CATTTGCTTTGTGGTCTAGTTCAAAGAAACGAGGTTACAAGAATGGGTTCCATCTTCGCC 552
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 607 CATTTGCTTTGTGGTCTGGTTCAAAGAAACGAGGTTACAAGAATGGGTTCTATCTTCGCC 666
Query 553 TCAGTCATG 561
|| || |||
Sbjct 667 TCCGTTATG 675
Score = 174 bits (94), Expect = 2e-42
Identities = 142/163 (87%), Gaps = 11/163 (7%)
Strand=Plus/Plus
Query 1 GTTCTAGAGGATTTAACATCAAATGTAACGCAGTTACAAGACAATG-A----A--A--TA 51
||||||||||||||||||||||||||||||||| |||||||||||| | | | ||
Sbjct 49 GTTCTAGAGGATTTAACATCAAATGTAACGCAGATACAAGACAATGTATTGGAGGAGATA 108
Query 52 CTCACACTTAACGCAAACACAAATTATCTCCAAA-GCTTCTTCCGTGGAAGATTTGATAA 110
|||||||| || |||||||| ||||||||||||| | ||||||| |||||| ||||||||
Sbjct 109 CTCACACTAAATGCAAACACGAATTATCTCCAAAAG-TTCTTCCTTGGAAGCTTTGATAA 167
Query 111 AGAGATTTTCAAGAAGAACGTACCAGTGGTGACTTATGACGAT 153
||| | |||||||||||||||||||||||| |||||||| |||
Sbjct 168 AGAAAGTTTCAAGAAGAACGTACCAGTGGTAACTTATGAAGAT 210
Score = 82.4 bits (44), Expect = 1e-14
Identities = 53/57 (93%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 561 GAAGGAGTTGTGGTCAAACATACGATCGGGGCAGCTCAGCGAGTGGATCACGGACAT 617
||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 709 GAA-GAGTTGTGTTCAAACATCCGATCAGGGCAGCTCAGCGAGTGGATCACGGACAT 764
> AT5G13320.1 | Symbols: PBS3, GDG1, WIN3, GH3.12 | Auxin-responsive
GH3 family protein | chr5:4267510-4271051 FORWARD LENGTH=1976
Length=1976
Score = 261 bits (141), Expect = 1e-68
Identities = 328/412 (80%), Gaps = 37/412 (9%)
Strand=Plus/Plus
Query 179 CTATAACCGGTTTCGTACTAAGTTCGGGAACTTCAGGGGGAGCACAAAAGATGATGCCAT 238
|||| || || ||| | |||||||| |||||||| || ||||||||||||||||||||||
Sbjct 356 CTATCACTGGATTCTTGCTAAGTTCTGGAACTTCTGGAGGAGCACAAAAGATGATGCCAT 415
Query 239 GGAATGAA-AA--A--T-----ATTT-AGATTCTTGTATGATCTTCGGATGC-A--T-T- 282
|||| || || | | |||| | |||| | || |||||||| |||| | | |
Sbjct 416 GGAA-CAACAAGTACTTGGACAATTTGACATTCATCTACGATCTTCGTATGCAAGTTATA 474
Query 283 ----A--ATGTGAAAAATGTGG-AGAAAGG-AAAGGCGATGATGTTT-TACTTCACTAAA 333
| |||||||| ||||| || |||| ||||| |||||||||| | |||||||||
Sbjct 475 ACCAAGCATGTGAAAGGTGTGGAAG-AAGGAAAAGG-GATGATGTTTCT-TTTCACTAAA 531
Query 334 CTCGAATCCATCACTCCCTCTGGCTTGCCCGCTCGCGTCGCAAGTAGTAGCTATTTAAAG 393
| |||||||| ||||| ||||||||||| ||||| ||||||| || |||||||| |||
Sbjct 532 CAAGAATCCATGACTCCTTCTGGCTTGCCTGCTCGAGTCGCAACCAGCAGCTATTTCAAG 591
Query 394 AGCAACTATTTCAAGAACCGTCCATCGAACTGGTATTACACGTACACCAGTCCAGATGAA 453
|| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 592 AGTGACTATTTCAAGAACCGTCCATCGAACTGGTATTACTCGTACACCAGCCCTGATGAA 651
Query 454 CTCACTCT-ATGTCC-AGACAACAAACAAAA-TCTCTACTGCCATTTGCTTTGTGGTCT- 509
||| ||| ||| || | |||||| | ||| ||| |||||||||||||| ||||| ||
Sbjct 652 GTCA-TCTTATGCCCTA-ACAACAC-CGAAAGTCTATACTGCCATTTGCTCTGTGG-CTT 707
Query 510 AGTTCAAAGAAACGAGGTTACAAGAATGGGTTCCATCTTCGCCTCAGTCATG 561
||| |||||| |||||||| || | |||||||||||| || |||||||||
Sbjct 708 AGTCCAAAGAGACGAGGTTGTGAGGACGGGTTCCATCTTTGCTTCAGTCATG 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5