BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472580
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23220.1 | Symbols: | Dynein light chain type 1 family prot... 1009 0.0
> AT1G23220.1 | Symbols: | Dynein light chain type 1 family protein
| chr1:8242423-8244403 FORWARD LENGTH=848
Length=848
Score = 1009 bits (546), Expect = 0.0
Identities = 763/859 (89%), Gaps = 49/859 (6%)
Strand=Plus/Plus
Query 1 AAGAACGCTATTTTGTCTCCTCCACGCAATTACCTCTTCT-TCTCTCAGACATTTCGTCA 59
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 3 AAGAACGCTATTTTGTCTCCTCCACGCAATTACCTCTTCTCACTCTCAGACATTTTGTCA 62
Query 60 AACAGATGGTGCTCG-TTCTGAAACAGCTTACGAACTAACAAGGAGACAGACACTAAGCT 118
||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 63 AACAGATGGTGCTCGTTTCTGAATCAGCTTAAGAACTAACAAGGAGACAGACACTAAGCT 122
Query 119 TGGTTGTTCTCTCCGATTAGAAGGGGGAAAAAGCGAAAACGA-GGGCTTGAGACGAGTGA 177
||||| ||||||||||||||| || |||||||| |||||||| |||||| ||||||||||
Sbjct 123 TGGTTTTTCTCTCCGATTAGACGGAGGAAAAAGTGAAAACGAGGGGCTT-AGACGAGTGA 181
Query 178 TGTGATAGAGATGGAAGGAGTTGAGCTAGAATTAGAGAGAAGAAGCAAGTTCTTGAACAG 237
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 182 TGTGATAGAGATGGAAGGAGTTGAGCTAGAATTAGAAAGAAGAAGCAAGTTCTTGAACAG 241
Query 238 TTTGATACAGAAGAAGAAGGCTAAAGAACAGCAAGATCAGAAAGATGAGTTCAATGTTCG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TTTGATACAGAAGAAGAAGGCTAAAGAACAGCAAGATCAGAAAGATGAGTTCAATGTTCG 301
Query 298 AGTTAGGGCTTCAGATATGCCTTTGCCTCAACAGAACAGAGCCTTTAGTTTGTCGCGTGA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGTTAGGGCTTCAGATATGCCTTTGCCTCAACAGAACAGAGCCTTTAGTTTGTCGCGTGA 361
Query 358 GATTTTGAATGCTACTCCTGGGAAGGCTGATAACAAAAGACTCGCTCTTGCCCTAAAAAA 417
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 362 GATTTTGAATGCTACTCCAGGGAAGGCTGATAACAAAAGACTCGCTCATGCCCTAAAAAA 421
Query 418 GGAATTTGATTCAGCCTACGGCCCGGCATGGCACTGCATTGTTGGGACAAGCTTTGGTTC 477
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 422 GGACTTCGATTCAGCCTACGGCCCGGCATGGCACTGCATTGTTGGAACAAGCTTTGGTTC 481
Query 478 ATACGTGACTCATTCCATTGGAGGATTCATATACTTTCAAATCGACAAAGTTTACGTTCT 537
||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 482 ATACGTGACTCATTCCACAGGAGGATTCCTATATTTTCAGATCGACAAAGTTTACGTTCT 541
Query 538 TCTCTTCAAGACCGCAGTGGAGCCGTTAGATCAAAAATGAGA-A-----T--A--A--AG 585
|||||||||||| || |||||||||||||||||||||||||| | | | | ||
Sbjct 542 TCTCTTCAAGACTGCCGTGGAGCCGTTAGATCAAAAATGAGATAAAACGTTGATGATCAG 601
Query 586 --CATCTTCAATT-AATCATTCCCTTCTAGAATTCTCTGCCTTGTATCCACCACACTCTT 642
||||||||||| |||| || ||| |||||||||||| ||||||||| | |||
Sbjct 602 AGCATCTTCAATTTAATCCTTTTCTTTTAGAATTCTCTGTCTTGTATCC-C-ACA----- 654
Query 643 ATGTAATTCTGCCTAAGTCAAAATCTTTGTTGCTCCTATTTTGTAATTAGAAGTGATCTT 702
||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 655 ATGTAATTCTGCCTAAGACAAAATCTTTGTGGCTCCTATTGTGTAATTAGAAGTCATCTT 714
Query 703 -------GT---T--T--CAACTTCACAATGCAAAATAttcttcttttctt-ctcatctt 747
|| | | |||||||||||||||||||||| ||||| |||| |||| ||
Sbjct 715 CTCTACTGTGAATCGTTTCAACTTCACAATGCAAAATATTGTTCTTCTCTTTCTCAAATT 774
Query 748 tctcaaaatc-ttaacttctttctttctGTTGA-GT-GTTTGTTGACATTTTCTTCTTCC 804
|| || | || ||| || || ||||| || ||| |||||||||||||||| |
Sbjct 775 -CT-AATTTTGTTTTTTTCGTTGTTG-TGTTGTTGTTGTT-GTTGACATTTTCTTCT-CT 829
Query 805 TCAAAAGAGCTCTAAACCC 823
||||||||||| |||||||
Sbjct 830 TCAAAAGAGCTTTAAACCC 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5