BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472583
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23240.1 | Symbols: | Caleosin-related family protein | chr... 1114 0.0
AT1G23250.1 | Symbols: | Caleosin-related family protein | chr... 532 2e-150
> AT1G23240.1 | Symbols: | Caleosin-related family protein | chr1:8252715-8254625
REVERSE LENGTH=943
Length=943
Score = 1114 bits (603), Expect = 0.0
Identities = 807/897 (90%), Gaps = 47/897 (5%)
Strand=Plus/Plus
Query 2 ATCCTAAACTAATAAGAAAGATTGTGATAATTTCAGTGTTCTGA--GTCATCTCCAATCT 59
|||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 58 ATCCTAAACTAATAAGAAAGCTTGTGATAATTTCAGTGTTCTCACTCTCATCTCCAATCT 117
Query 60 CTGATATATTTCTCATGTCTCATCAGGCAGTAGAGCTA---T-T-A-TCTGTTTCTCCCA 113
||||||||||||||||||||||||| |||||| |||| | | | || ||||| |
Sbjct 118 GTGATATATTTCTCATGTCTCATCAGACAGTAGCGCTAGCCTCTAAGGCTAAGTCTCCTA 177
Query 114 AATCCAAAGGTAAAGGAGGAAAATCAGATAA-GAAAGAATTGACTGCATTGGAGAAACAT 172
|| || | ||| ||||||| | |||||| |||| || ||||||||||||||||||||
Sbjct 178 AA-CC-CA---AAA-GAGGAAAGTTAGATAAGGAAA-AAATGACTGCATTGGAGAAACAT 230
Query 173 GTGTCCTTCTTCGACAGGAACAAAGACGGCACCGTTTATCCATGGGAAACCTACCAAGGA 232
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GTTTCCTTCTTCGACAGGAACAAAGACGGCACCGTTTATCCATGGGAAACCTACCAAGGA 290
Query 233 TTTAGAGCGCTTGGGACAGGGCGTCTTTTGGCGGCTTTTGTTGCTATCTTCATCAACATG 292
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 291 TTTAGAGCGCTCGGGACAGGGCGTCTTTTGGCGGCTTTTGTTGCTATATTCATCAACATG 350
Query 293 GGACTCAGCCAA-AAAACTCGTCCGGGAAAGAGATTTTCGCCGTTGTTTCCAATAGACGT 351
|||||||| ||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 351 GGACTCAG-CAAGAAAACTCGTCCGGGAAAGGGATTCTCGCCGTTGTTTCCAATAGACGT 409
Query 352 GAAGAATAGTCACCTTTGCATGCACGGTAGTGACACCGACGTCTACGACGATGACGGAAG 411
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 410 GAAGAATAGTCACCTTTGCATGCACGGTAGTGACACCGACGTCTATGACGATGACGGAAG 469
Query 412 ATTTGTGGAATCAAAATTCGAGGAGATATTCAAGAAGCATGCTCGCACACATAAAGGTGC 471
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 470 ATTTGTGGAATCAAAATTCGAGGAAATATTCAACAAGCATGCTCGCACACATAAAGATGC 529
Query 472 TCTCACTGCAGAGGAAATTCAAAAAATGCTTAAGACTAACAGGGATCCTTTCGATATCAC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TCTCACTGCAGAGGAAATTCAAAAAATGCTTAAGACTAACAGGGATCCTTTCGATATCAC 589
Query 532 AGGATGGCTTTCAGATTATGGAGAATGGAAAATATTACATAAC-TTAGC-CAAAGACAAA 589
||||||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||
Sbjct 590 AGGATGGCTTTCAGATTATGGAGAATGGAAAATATTACATA-CGTTAGCTCAA-GACAAA 647
Query 590 AATGGTTTGTTGTC--AAAAGATAGCGTCAGGGACATCTACGATGGTAGCCTTTTCGAAA 647
||||||||||| || |||||| ||||||||| |||||||||||||||||||||| |
Sbjct 648 AATGGTTTGTTATCGGAAAAGA--GCGTCAGGGCCATCTACGATGGTAGCCTTTTCCACC 705
Query 648 AACTGGAGaaaaaaa-aT-T-CATCTTCTTCTCGTGGCAAGAAACAAAAACTACCTTAAA 704
||||||||||||||| || | | |||||||||||||||||||||||||||||||| ||||
Sbjct 706 AACTGGAGAAAAAAAGATCTTCTTCTTCTTCTCGTGGCAAGAAACAAAAACTACCATAAA 765
Query 705 TGTTTACGTGAATCTTCTTATATTATTATGGGGGAGATCAAATAA-ATTTCCTGGTTTAT 763
||||||| |||||||||||||||||||||| || |||||| |||| ||| | ||||||||
Sbjct 766 TGTTTACATGAATCTTCTTATATTATTATGTGG-AGATCACATAACATT-CTTGGTTTAT 823
Query 764 AATTATATAATTTGGAAACCAAATAACCTTTGTAATGAATA-TT---TA-A-CTA----T 813
||||||||||||| | | ||||||| ||||||||||||| || || | | | |
Sbjct 824 AATTATATAATTTTGT--C-AAATAACTTTTGTAATGAATAATTACATAGATCAAACACT 880
Query 814 -TT-ATATAATTATTGTGTATATTGACaaaaaaaCACTTATTAAAGTATACTTCATT 868
|| | |||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 881 CTTTAAATAATTATTGTGTATATTGAAAAAAAAAAACTTATCAAAGTATACTTCATT 937
> AT1G23250.1 | Symbols: | Caleosin-related family protein | chr1:8255233-8256770
REVERSE LENGTH=618
Length=618
Score = 532 bits (288), Expect = 2e-150
Identities = 500/596 (84%), Gaps = 39/596 (7%)
Strand=Plus/Plus
Query 125 AAAGGAGGA-AAATCAGAT-AAGAAAGAATTGACTGCATTGGAGAAACATGTGTCCTTCT 182
|||||| || ||| ||| | | ||| ||| |||||||||||||||||||||||||||||
Sbjct 45 AAAGGAAGATAAA-CAGTTGAGGAAGGAA-AGACTGCATTGGAGAAACATGTGTCCTTCT 102
Query 183 TCGACAGGAACAAAGACGGCACCGTTTATCCATGGGAAACCTACCAA-GGATTTAGAGCG 241
| ||| | ||| ||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 103 TTGACCGAAACGGTGACGGCATTGTTTATCCATGAGAAACCTACCAAGGGATTTAGAGCA 162
Query 242 CTTGGGACAGGGCGTCTT-TTGGCGGCTTTTGTTGCTATCTTCATCAACATGGGACTCAG 300
|| |||||||||||| || || |||||||||||||| ||||| ||||||||||||||||
Sbjct 163 CTCGGGACAGGGCGT-TTCATGTCGGCTTTTGTTGCTGTCTTCTTCAACATGGGACTCAG 221
Query 301 CCAAAAAACTCGTCCGGGAAAGAGATTTTC-GCCGT-TGTTTCCAATAGACGTGAAGAAT 358
||| ||||||||||||| | | | ||| | | | || || || | | |||
Sbjct 222 CCAGAAAACTCGTCCGGTTCA-A-CTATTCGGATATATCTTACC-ATTG--TTTTTGAA- 275
Query 359 AGTCACCTTTGCATGCACGGTAGTGAC-ACCGACGTCTACGACGATGACGGAAGATTTGT 417
| | | |||| ||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 276 A--C-CATTTGTATGCACGGTAGTGACAACCGACGTCTACGACAAAGACGGAAGATTTGT 332
Query 418 GGAATCAAAATTCGAGGAGATATTCAAGAAGCATGCTCGCACACATAAAGGTGCTCTCAC 477
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 333 GGAATCAAAATTCGAGGAGATATTCAACAAGCATGCTCGCACACATAAAGATGCTCTCAC 392
Query 478 TGCAGAGGAAATTCAAA-AAATGCTTAAGACTAACAGGGATCCTTTCGATATCA-CAGGA 535
|||| |||||||| ||| ||||||||||||||||||| || |||| |||| ||| | |||
Sbjct 393 TGCAAAGGAAATT-AAACAAATGCTTAAGACTAACAGAGAACCTTACGATTTCATC-GGA 450
Query 536 TGGCTTTCAGATTATGGAGAATGGAAAATATTACATAAC-TTAGC-CAAAGACAAAAATG 593
||||||||||||| | |||||||||||||||||||| | ||||| ||| ||||| ||
Sbjct 451 TGGCTTTCAGATTTTATAGAATGGAAAATATTACATA-CGTTAGCTCAA-GACAA---TG 505
Query 594 GTTTGTTGTCAAAAGATAGC-GTCAG-GGACATCTACGATGGTAGCCTTTTCGAAAAACT 651
|||||||| | ||||| || || || || | |||||||||||||||||||| || ||||
Sbjct 506 GTTTGTTGACGGAAGAT-GCAGTAAGAGG-CGTCTACGATGGTAGCCTTTTCCAACAACT 563
Query 652 GGAGaaaaaaa-aTTCATCTTCTTC-TC--GTGGCAAGAAACAAAAACTACCTTAA 703
||||||||||| || |||||||||| || ||||||||||||||||||||||||||
Sbjct 564 GGAGAAAAAAAGAT-CATCTTCTTCATCTCGTGGCAAGAAACAAAAACTACCTTAA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5