BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472587
Length=551
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23290.1 | Symbols: RPL27A, RPL27AB | Ribosomal protein L18e... 896 0.0
AT1G70600.1 | Symbols: | Ribosomal protein L18e/L15 superfamil... 599 9e-171
> AT1G23290.1 | Symbols: RPL27A, RPL27AB | Ribosomal protein L18e/L15
superfamily protein | chr1:8262984-8263587 FORWARD LENGTH=604
Length=604
Score = 896 bits (485), Expect = 0.0
Identities = 533/555 (96%), Gaps = 7/555 (1%)
Strand=Plus/Plus
Query 1 AATGGCGACGGCGTTGAAGAAGAACAGAAAGAAGAGAGGACACGTCAGCGCCGGTCATGG 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 23 AATGGCGACGGCGTTGAAGAAGAACAGAAAGAAGAGAGGTCACGTCAGCGCCGGACATGG 82
Query 61 ACGTATCGGAAAACATCGCAAGCATCCCGGAGGTCGTGGTAACGCAGGAGGTATGCATCA 120
||||||||| || || || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 83 ACGTATCGGTAAGCACCGTAAGCATCCCGGAGGTCGTGGAAACGCAGGAGGTATGCATCA 142
Query 121 CCACCGTATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGCAAAGTTGGTATGAGGTA 180
|||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 143 CCACAGGATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGGAAAGTTGGTATGAGGTA 202
Query 181 TTTCCACAAGCTTCGTAACAAGTTCTTTTGCCCAATCGTGAACCTCGACAAGCTCTGGTC 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 203 TTTCCACAAGCTTCGTAACAAGTTCTTTTGCCCAATCGTGAACCTGGACAAGCTATGGTC 262
Query 241 ACTTGTTCCTGAAGACGTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 ACTTGTTCCTGAAGACGTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGT 322
Query 301 GACGCAGCATGGTTTCTTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GACGCAGCATGGTTTCTTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTT 382
Query 361 CGTTGTGAAGGCTAAGCTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CGTTGTGAAGGCTAAGCTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGG 442
Query 421 TGCTGTTGTTCTCACTGCTTAGGTTTTT----CAATTCAGTCTCTTTTTAATTATTATTT 476
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||
Sbjct 443 TGCTGTTGTTCTCACTGCTTAGTTTTTTTTTTCAATTCAGTCTCTTTTTAATT-T-ATTT 500
Query 477 TCATGTTTTTGAACTCAGCTTTGTTGGATTTTGGAATCAGAGATCTTTTAATCTATGCTA 536
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 501 -CATGTTATTGAACTCAGCTTTGTTGGATTTTGGAATCAGAGATCTTTTAATCTATGGTA 559
Query 537 TTGGATTATATAATT 551
|||||||||||||||
Sbjct 560 TTGGATTATATAATT 574
> AT1G70600.1 | Symbols: | Ribosomal protein L18e/L15 superfamily
protein | chr1:26620923-26621659 REVERSE LENGTH=737
Length=737
Score = 599 bits (324), Expect = 9e-171
Identities = 394/429 (92%), Gaps = 0/429 (0%)
Strand=Plus/Plus
Query 17 AAGAAGAACAGAAAGAAGAGAGGACACGTCAGCGCCGGTCATGGACGTATCGGAAAACAT 76
||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| || ||
Sbjct 67 AAGAAGAACAGGAAGAAGAGAGGTCACGTCAGCGCCGGACATGGGCGTATCGGTAAGCAC 126
Query 77 CGCAAGCATCCCGGAGGTCGTGGTAACGCAGGAGGTATGCATCACCACCGTATCCTCTTC 136
|| |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 127 CGTAAGCATCCCGGAGGTCGTGGTAACGCTGGAGGTATGCATCACCACAGGATCCTCTTC 186
Query 137 GACAAGTACCATCCAGGTTACTTCGGCAAAGTTGGTATGAGGTATTTCCACAAGCTTCGT 196
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 187 GACAAGTACCATCCAGGTTACTTCGGTAAAGTTGGTATGAGGTATTTCCACAAGCTGAGG 246
Query 197 AACAAGTTCTTTTGCCCAATCGTGAACCTCGACAAGCTCTGGTCACTTGTTCCTGAAGAC 256
||||||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 247 AACAAGTTCTTCTGCCCAATCGTTAACCTCGACAAGCTTTGGTCACTCGTCCCTGAAGAT 306
Query 257 GTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGTGACGCAGCATGGTTTC 316
|||||||||||||| | |||||| ||||||||||||||||||||||| || |||||||||
Sbjct 307 GTGAAGGCGAAATCAACCAAGGACAATGTTCCGTTGATCGATGTGACTCAACATGGTTTC 366
Query 317 TTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTTCGTTGTGAAGGCTAAG 376
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 367 TTCAAGGTTTTGGGTAAAGGTCATTTGCCTGAGAACAAGCCGTTCGTTGTGAAGGCGAAG 426
Query 377 CTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTTCTCACT 436
||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 427 CTTATTTCGAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTGCTTACT 486
Query 437 GCTTAGGTT 445
||||| |||
Sbjct 487 GCTTAAGTT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26423161322
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5